MD11G1020900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0022362
Physical Location & Seq
Forward (+)
1812575 .. 1815938
3364 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1020900.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGAATCCACCTGACACCACACCTGTGGCTGCTCGTCTTCGTTCACAACATGGTTCAGATGATCGCTTTGTAGTTGAAGAAGAGAATCGGCGCATTGGATGGTCCAGCTATACAAAAAAAGAATTCCCTGCTCAAGTTTCAAGTAAGGATCAATTGCATGATGAGTTGGAAGCAGCAAGCAGTACAGAAATTGGGCCTTTGAATTGTCTTGATAAGGGGAAAGATGTGAAACATTGCATGCAAATGAGTACAAATCCGGCCTCAGAAGGGCAGAGTGAAGGAGAAGCAGATAAAGGGAAACAATTTACTGCATGTGCTGGTTCTCAGGGGAGTGGAGAAGGCGTAACTTCTCCAGTTACAGCTGGGATCGCTCGTCCTTTTTCTTTTTCCCACCTAGGTAACAAACTTCCGTTTAAGAAAAGAAGACCTTATAACTACACAGAGACTGAAGTAGAGATGGAAAGAGATAAAGTAGAAGATGGCTTGCTAGAAGTAAAAGTGGAAGATGGGGTAATGGAAGCAAAAGAAAGATGGGTGCCTGTAGAAGTTGAAACGGAAAATCAGTTAGCAGAAGTTAAGGAAGATGAGCCAAAAGAAGTGAAGGCTGACGATGCAACAGCTGACAAGGAAGATGAATCACTCGAGGAGGGGGAACTGAGAGAGGAAACTGAGGAGGAGACAAAAAAAATGGGTGGGCATGAACTCTTCAATGAAGATGAAGATTACCAGAGGACTCAGAGCATTATCCGCACTGTTACCTGTGGGTCGTATGTACCTCATCTGGCCATTGATGAGAACCAGGAGGACAGCAAAAAAGAAGAACTTGGTCTAGAAGAGACAGCAGGTGAACCAATTGAGAAGCCAAGAAGGGGAAGGAAGAGGCGCAGATCTGGTGCTAGCTCTAGCAGCGATGAGCCTCGTCAGGGAAGGCGAGAACTAAAGAGAGGAAGGCCAAAGAGGATGCAAGATCCAGTTGAGGCAAATCAAGGGTGTGTAGATATTGCCCCAAGAAGAGGTCGCTCCAAGGGGGATACAGAGGCATCATTTCATTCATACAATAGGTACCCAAGAAGAGGTTGTTCCAAGAAGGACACAGAGGAGTCCTTTTCTCCAAACAAAAGGAAGCCAAGAAGGGGTCGCTCCAAGAGGAGCACAGAGGAATCACCTCATTCAAACACTAGGTACTCTCTCGATACAGAGGAATCGTCTTCTTCAAACAATAGGAAGACAAGAAGGGGTCACCCCAGGAGGAGCACAGAGGAATCACCAGATTCAAACAATAGGAATGCTGAAATGCCAAAGCCTAAGAGGGGAGGCCAAAGAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

443

Amino Acids

49.89

Weight (kDa)

5.84

Isoelectric Point (pI)

73.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022362)

Species Orthologous Gene IDs
malus_domestica MD03G1018900.v1.1 MD11G1020900.v1.1
pyrus_communis pycom03g01650 pycom11g01680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AarI CACCTGC 1 cut(s) 833
Acc36I ACCTGC 1 cut(s) 833
Acc65I GGTACC 1 cut(s) 1062
AccB1I GGYRCC 2 cut(s) 535, 1062
AciI CCGC 1 cut(s) 748
AclWI GGATC 3 cut(s) 156, 374, 962
AcoI YGGCCR 1 cut(s) 783
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 5 cut(s) 184, 250, 774, 1064, 1184
AfiI CCNNNNNNNGG 7 cut(s) 267, 869, 923, 1013, 1073, 1133, 1310
AgsI TTSAA 8 cut(s) 77, 141, 202, 551, 709, 1173, 1215, 1275
AjnI CCWGG 2 cut(s) 798, 1244
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 4 cut(s) 108, 362, 620, 900
AluI AGCT 4 cut(s) 108, 362, 620, 900
Alw21I GWGCWC 2 cut(s) 1154, 1256
Alw26I GTCTC 3 cut(s) 437, 671, 830
AlwI GGATC 3 cut(s) 156, 374, 962
AlwNI CAGNNNCTG 1 cut(s) 446
Ama87I CYCGRG 1 cut(s) 641
AoxI GGCC 5 cut(s) 194, 258, 783, 950, 1315
ApeKI GCWGC 3 cut(s) 29, 173, 906
ApoI RAATTY 1 cut(s) 122
Asp718I GGTACC 1 cut(s) 1062
AspA2I CCTAGG 1 cut(s) 394
AspLEI GCGC 2 cut(s) 93, 885
AspS9I GGNCC 2 cut(s) 102, 194
AsuHPI GGTGA 4 cut(s) 857, 1155, 1232, 1257
AsuNHI GCTAGC 1 cut(s) 896
AvaI CYCGRG 1 cut(s) 641
AvaII GGWCC 1 cut(s) 102
AvrII CCTAGG 1 cut(s) 394
BalI TGGCCA 1 cut(s) 785
BanI GGYRCC 2 cut(s) 535, 1062
BbsI GAAGAC 4 cut(s) 29, 430, 1200, 1232
Bbv12I GWGCWC 2 cut(s) 1154, 1256
BbvI GCAGC 3 cut(s) 16, 185, 918
BccI CCATC 5 cut(s) 93, 451, 473, 500, 525
BciT130I CCWGG 2 cut(s) 800, 1246
BciVI GTATCC 1 cut(s) 1024
BcoDI GTCTC 3 cut(s) 437, 671, 830
BfaI CTAG 6 cut(s) 395, 488, 830, 897, 903, 1179
BfmI CTRYAG 1 cut(s) 540
BfuAI ACCTGC 1 cut(s) 833
BfuI GTATCC 1 cut(s) 1024
BglII AGATCT 1 cut(s) 887
BisI GCNGC 3 cut(s) 30, 174, 907
BlnI CCTAGG 1 cut(s) 394
BlsI GCNGC 3 cut(s) 31, 175, 908
Bme1390I CCNGG 2 cut(s) 800, 1246
Bme18I GGWCC 1 cut(s) 102
BmeT110I CYCGRG 1 cut(s) 641
BmgT120I GGNCC 2 cut(s) 102, 194
BmiI GGNNCC 2 cut(s) 537, 1064
BmrFI CCNGG 2 cut(s) 800, 1246
BmsI GCATC 3 cut(s) 601, 951, 1049
BmtI GCTAGC 1 cut(s) 900
BpiI GAAGAC 4 cut(s) 29, 430, 1200, 1232
BpmI CTGGAG 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 394, 1023, 1244
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 7 cut(s) 267, 869, 923, 1013, 1073, 1133, 1310
Bse1I ACTGG 2 cut(s) 353, 971
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 2 cut(s) 800, 1246
BseDI CCNNGG 3 cut(s) 394, 1023, 1244
BseGI GGATG 2 cut(s) 104, 966
BseLI CCNNNNNNNGG 7 cut(s) 267, 869, 923, 1013, 1073, 1133, 1310
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 5 cut(s) 276, 338, 647, 660, 749
BseNI ACTGG 2 cut(s) 353, 971
BseRI GAGGAG 6 cut(s) 659, 686, 689, 1112, 1162, 1264
BseXI GCAGC 3 cut(s) 16, 185, 918
BseYI CCCAGC 1 cut(s) 362
BshFI GGCC 5 cut(s) 196, 260, 785, 952, 1317
BshNI GGYRCC 2 cut(s) 535, 1062
BsiHKAI GWGCWC 2 cut(s) 1154, 1256
BsiHKCI CYCGRG 1 cut(s) 641
BsiSI CCGG 1 cut(s) 257
BslI CCNNNNNNNGG 7 cut(s) 267, 869, 923, 1013, 1073, 1133, 1310
BsmAI GTCTC 3 cut(s) 437, 671, 830
BsmI GAATGC 1 cut(s) 1291
BsnI GGCC 5 cut(s) 196, 260, 785, 952, 1317
BsoBI CYCGRG 1 cut(s) 641
Bsp1286I GDGCHC 2 cut(s) 1154, 1256
Bsp143I GATC 5 cut(s) 61, 148, 366, 887, 967
BspACI CCGC 1 cut(s) 748
BspANI GGCC 5 cut(s) 196, 260, 785, 952, 1317
BspCNI CTCAG 5 cut(s) 275, 337, 648, 661, 748
BspLI GGNNCC 2 cut(s) 537, 1064
BspMI ACCTGC 1 cut(s) 833
BspOI GCTAGC 1 cut(s) 900
BspPI GGATC 3 cut(s) 156, 374, 962
BspT107I GGYRCC 2 cut(s) 535, 1062
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 2 cut(s) 353, 971
BssECI CCNNGG 3 cut(s) 394, 1023, 1244
BssMI GATC 5 cut(s) 61, 148, 366, 887, 967
BssT1I CCWWGG 2 cut(s) 394, 1023
Bst2UI CCWGG 2 cut(s) 800, 1246
Bst4CI ACNGT 1 cut(s) 754
Bst6I CTCTTC 6 cut(s) 75, 710, 828, 872, 1006, 1066
BstC8I GCNNGC 4 cut(s) 178, 239, 485, 898
BstDEI CTNAG 6 cut(s) 262, 324, 656, 669, 735, 1305
BstEII GGTNACC 1 cut(s) 1238
BstF5I GGATG 2 cut(s) 104, 966
BstHHI GCGC 2 cut(s) 93, 885
BstKTI GATC 5 cut(s) 64, 151, 369, 890, 970
BstMAI GTCTC 3 cut(s) 437, 671, 830
BstMBI GATC 5 cut(s) 61, 148, 366, 887, 967
BstMWI GCNNNNNNNGC 4 cut(s) 368, 611, 747, 906
BstNI CCWGG 2 cut(s) 800, 1246
BstNSI RCATGY 2 cut(s) 241, 315
BstPI GGTNACC 1 cut(s) 1238
BstSCI CCNGG 2 cut(s) 798, 1244
BstSFI CTRYAG 1 cut(s) 540
BstV1I GCAGC 3 cut(s) 16, 185, 918
BstV2I GAAGAC 4 cut(s) 29, 430, 1200, 1232
BstX2I RGATCY 2 cut(s) 887, 967
BstXI CCANNNNNNTGG 1 cut(s) 25
BstYI RGATCY 2 cut(s) 887, 967
BsuI GTATCC 1 cut(s) 1024
BsuRI GGCC 5 cut(s) 196, 260, 785, 952, 1317
BtgZI GCGATG 1 cut(s) 924
BtsCI GGATG 2 cut(s) 104, 966
BtsIMutI CAGTG 1 cut(s) 750
BveI ACCTGC 1 cut(s) 833
Cac8I GCNNGC 4 cut(s) 178, 239, 485, 898
CaiI CAGNNNCTG 1 cut(s) 446
CfoI GCGC 2 cut(s) 93, 885
Cfr13I GGNCC 2 cut(s) 102, 194
Csp6I GTAC 5 cut(s) 183, 249, 773, 1063, 1183
CviAII CATG 5 cut(s) 50, 158, 238, 312, 698
CviQI GTAC 5 cut(s) 183, 249, 773, 1063, 1183
DdeI CTNAG 6 cut(s) 262, 324, 656, 669, 735, 1305
DpnI GATC 5 cut(s) 63, 150, 368, 889, 969
DpnII GATC 5 cut(s) 61, 148, 366, 887, 967
EaeI YGGCCR 1 cut(s) 783
Eam1104I CTCTTC 6 cut(s) 75, 710, 828, 872, 1006, 1066
EarI CTCTTC 6 cut(s) 75, 710, 828, 872, 1006, 1066
Eco130I CCWWGG 2 cut(s) 394, 1023
Eco47I GGWCC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 468
Eco88I CYCGRG 1 cut(s) 641
Eco91I GGTNACC 1 cut(s) 1238
EcoO65I GGTNACC 1 cut(s) 1238
EcoRI GAATTC 1 cut(s) 122
EcoRII CCWGG 2 cut(s) 798, 1244
EcoT14I CCWWGG 2 cut(s) 394, 1023
ErhI CCWWGG 2 cut(s) 394, 1023
FaeI CATG 5 cut(s) 53, 161, 241, 315, 701
FaiI YATR 9 cut(s) 51, 111, 159, 239, 313, 432, 699, 771, 1054
FalI AAGNNNNNCTT 4 cut(s) 412, 444, 807, 839
FatI CATG 5 cut(s) 49, 157, 237, 311, 697
Fnu4HI GCNGC 3 cut(s) 30, 174, 907
FokI GGATG 2 cut(s) 111, 973
Fsp4HI GCNGC 3 cut(s) 30, 174, 907
FspBI CTAG 6 cut(s) 395, 488, 830, 897, 903, 1179
GlaI GCGC 2 cut(s) 92, 884
GluI GCNGC 3 cut(s) 30, 174, 907
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 5 cut(s) 196, 260, 785, 952, 1317
HapII CCGG 1 cut(s) 257
HhaI GCGC 2 cut(s) 93, 885
Hin1II CATG 5 cut(s) 53, 161, 241, 315, 701
Hin6I GCGC 2 cut(s) 91, 883
HinP1I GCGC 2 cut(s) 91, 883
HinfI GANTC 9 cut(s) 4, 85, 635, 733, 1100, 1160, 1202, 1262, 1271
HpaII CCGG 1 cut(s) 257
HphI GGTGA 4 cut(s) 857, 1155, 1232, 1257
Hpy166II GTNNAC 2 cut(s) 44, 848
Hpy188I TCNGA 3 cut(s) 58, 265, 738
Hpy188III TCNNGA 3 cut(s) 209, 830, 1190
Hpy8I GTNNAC 2 cut(s) 44, 848
HpyCH4III ACNGT 1 cut(s) 754
HpyCH4V TGCA 6 cut(s) 157, 237, 241, 311, 614, 964
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 611, 747, 906
HpyF3I CTNAG 6 cut(s) 262, 324, 656, 669, 735, 1305
Hsp92II CATG 5 cut(s) 53, 161, 241, 315, 701
HspAI GCGC 2 cut(s) 91, 883
KpnI GGTACC 1 cut(s) 1066
Kzo9I GATC 5 cut(s) 61, 148, 366, 887, 967
LmnI GCTCC 4 cut(s) 1025, 1145, 1149, 1251
Lsp1109I GCAGC 3 cut(s) 16, 185, 918
LweI GCATC 3 cut(s) 601, 951, 1049
MaeI CTAG 6 cut(s) 395, 488, 830, 897, 903, 1179
MaeIII GTNAC 5 cut(s) 343, 355, 398, 754, 1238
MalI GATC 5 cut(s) 63, 150, 368, 889, 969
MboI GATC 5 cut(s) 61, 148, 366, 887, 967
MfeI CAATTG 2 cut(s) 152, 852
MflI RGATCY 2 cut(s) 887, 967
MhlI GDGCHC 2 cut(s) 1154, 1256
MlsI TGGCCA 1 cut(s) 785
MluCI AATT 6 cut(s) 122, 152, 189, 202, 302, 852
MluNI TGGCCA 1 cut(s) 785
MlyI GAGTC 2 cut(s) 727, 1109
MmeI TCCRAC 1 cut(s) 147
Mox20I TGGCCA 1 cut(s) 785
MscI TGGCCA 1 cut(s) 785
MseI TTAA 2 cut(s) 414, 576
MslI CAYNNNNRTG 2 cut(s) 23, 242
Msp20I TGGCCA 1 cut(s) 785
MspA1I CMGCKG 2 cut(s) 362, 620
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 2 cut(s) 800, 1246
MunI CAATTG 2 cut(s) 152, 852
Mva1269I GAATGC 1 cut(s) 1291
MvaI CCWGG 2 cut(s) 800, 1246
MwoI GCNNNNNNNGC 4 cut(s) 368, 611, 747, 906
NdeII GATC 5 cut(s) 61, 148, 366, 887, 967
NheI GCTAGC 1 cut(s) 896
NlaIII CATG 5 cut(s) 53, 161, 241, 315, 701
NlaIV GGNNCC 2 cut(s) 537, 1064
NmuCI GTSAC 1 cut(s) 1238
NspI RCATGY 2 cut(s) 241, 315
OliI CACNNNNGTG 1 cut(s) 23
PaeI GCATGC 1 cut(s) 241
PaeR7I CTCGAG 1 cut(s) 641
PaqCI CACCTGC 1 cut(s) 833
PctI GAATGC 1 cut(s) 1291
PfeI GAWTC 7 cut(s) 4, 85, 635, 1160, 1202, 1262, 1271
PkrI GCNGC 3 cut(s) 31, 175, 908
PleI GAGTC 2 cut(s) 727, 1108
PpsI GAGTC 2 cut(s) 727, 1108
PsiI TTATAA 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 798, 1244
PspEI GGTNACC 1 cut(s) 1238
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 2 cut(s) 798, 1244
PspN4I GGNNCC 2 cut(s) 537, 1064
PspPI GGNCC 2 cut(s) 102, 194
PspXI VCTCGAGB 1 cut(s) 641
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 2 cut(s) 887, 967
PvuII CAGCTG 2 cut(s) 362, 620
RsaI GTAC 5 cut(s) 184, 250, 774, 1064, 1184
RsaNI GTAC 5 cut(s) 183, 249, 773, 1063, 1183
RseI CAYNNNNRTG 2 cut(s) 23, 242
SaqAI TTAA 2 cut(s) 414, 576
SatI GCNGC 3 cut(s) 30, 174, 907
Sau3AI GATC 5 cut(s) 61, 148, 366, 887, 967
Sau96I GGNCC 2 cut(s) 102, 194
SchI GAGTC 2 cut(s) 727, 1109
ScrFI CCNGG 2 cut(s) 800, 1246
SduI GDGCHC 2 cut(s) 1154, 1256
SfaNI GCATC 3 cut(s) 601, 951, 1049
SfcI CTRYAG 1 cut(s) 540
Sfr274I CTCGAG 1 cut(s) 641
SinI GGWCC 1 cut(s) 102
SlaI CTCGAG 1 cut(s) 641
SmiMI CAYNNNNRTG 2 cut(s) 23, 242
SmlI CTYRAG 2 cut(s) 132, 641
SmoI CTYRAG 2 cut(s) 132, 641
SphI GCATGC 1 cut(s) 241
Sse9I AATT 6 cut(s) 122, 152, 189, 202, 302, 852
SsiI CCGC 1 cut(s) 748
SspMI CTAG 6 cut(s) 395, 488, 830, 897, 903, 1179
StyD4I CCNGG 2 cut(s) 798, 1244
StyI CCWWGG 2 cut(s) 394, 1023
TaaI ACNGT 1 cut(s) 754
TaqI TCGA 2 cut(s) 642, 1191
TasI AATT 6 cut(s) 122, 152, 189, 202, 302, 852
TatI WGTACW 2 cut(s) 182, 248
TfiI GAWTC 7 cut(s) 4, 85, 635, 1160, 1202, 1262, 1271
Tru1I TTAA 2 cut(s) 414, 576
Tru9I TTAA 2 cut(s) 414, 576
TscAI CASTG 1 cut(s) 757
TseFI GTSAC 1 cut(s) 1238
TseI GCWGC 3 cut(s) 29, 173, 906
Tsp45I GTSAC 1 cut(s) 1238
TspDTI ATGAA 7 cut(s) 17, 648, 714, 726, 732, 1037, 1041
TspGWI ACGGA 2 cut(s) 399, 569
TspRI CASTG 1 cut(s) 757
VpaK11BI GGWCC 1 cut(s) 102
XapI RAATTY 1 cut(s) 122
XbaI TCTAGA 1 cut(s) 829
XceI RCATGY 2 cut(s) 241, 315
XhoI CTCGAG 1 cut(s) 641
XmaJI CCTAGG 1 cut(s) 394
XspI CTAG 6 cut(s) 395, 488, 830, 897, 903, 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.