pycom11g01680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0022362
Physical Location & Seq
Forward (+)
1444364 .. 1446308
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g01680.4

Sequence Viewer

Length: 963 bp
ATGAGAATTCGAAATAGCTGGTCAAATTTCTCTCAGATGACTCCACCTGACACCACACCTGCGGCTACTCATCTTCGTTCACAACATGGTTCAGATGATCGCTTTGTAATTGAAGAAGAGAATCGGCACATTGGATGGTCCGGCTATACAAAAAAAGAATTCCCTGCTCAAGTTTCTAGTAAGGATCAATTGCACGATGAGTTGGAGGCAGCAAGCAGTACAGAAATTGGGCCTTTGAACTGTCTTGATAAGGGGAAAGATGCGAAACATTGCATGCAAATGAATACAAATCCGGCCTCAGAAGGGCAGAGTGAAGGAAAAGCAGATAAAGGGAAACAATTTACTGCATGTGCTGGTTCTCAGGGGGGTGGAGAAGGCGTAACTTCTCCAGTTACAGCTGGGATCGCTCATCCTTTTTCTTTTTCTTACCTAGGTAACAAACTTCCGTTTAAGAAAAGAAGACCTTATAACTACACAGAGACTGAAGTAGAGATGGAAAGAGAGAAAGTAGAAGATGGCTTGCTAGAAGTAAAAGTGGAAGATGCGGTAATGGAGGCAAAAGAAAGATGGGTGCTTGTAGAAGTTGAAATGGAAAATCAGTTAGCAGAAGTTAAGGAAGATGAGCCAAAAGAAGTGGAGGCTGACGATGCAACAGCTGACAAGGAAAATGAATCACTCGAGGAGGGGGAACTGAGAGAGGAAACTGAGGAGGAGACAAAAAAAATGGGTGGGCTTGAACTCTTCAATGAAGATGAAGATTTCCAGAGGACTCGGAGCATTATCCGCACTGTTACCTGTGGGTCGTATGTACCTCATCTGGCCATTGATGAGAACCAGCAGGACAGCAAAAAAGAAGAACTTGGTCTAGAAGAGACAGCAGGTGAACCAAATGAGAAGCCAAGAACGGGAAGGAAGAGGCGCAGATCTGGTGCTAGCTCTAGCAGCGATGAGCCTCGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

35.89

Weight (kDa)

4.79

Isoelectric Point (pI)

55.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022362)

Species Orthologous Gene IDs
malus_domestica MD03G1018900.v1.1 MD11G1020900.v1.1
pyrus_communis pycom03g01650 pycom11g01680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AarI CACCTGC 2 cut(s) 67, 869
Acc36I ACCTGC 2 cut(s) 67, 869
AciI CCGC 3 cut(s) 62, 545, 784
AclWI GGATC 2 cut(s) 192, 410
AcoI YGGCCR 1 cut(s) 819
AcsI RAATTY 3 cut(s) 6, 25, 158
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 2 cut(s) 220, 810
AfiI CCNNNNNNNGG 2 cut(s) 303, 905
AgsI TTSAA 5 cut(s) 113, 238, 587, 737, 745
AluBI AGCT 4 cut(s) 18, 398, 656, 936
AluI AGCT 4 cut(s) 18, 398, 656, 936
Alw26I GTCTC 3 cut(s) 473, 707, 866
AlwI GGATC 2 cut(s) 192, 410
AlwNI CAGNNNCTG 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 677
AoxI GGCC 3 cut(s) 230, 294, 819
ApeKI GCWGC 2 cut(s) 209, 942
ApoI RAATTY 3 cut(s) 6, 25, 158
AspA2I CCTAGG 1 cut(s) 430
AspLEI GCGC 1 cut(s) 921
AspS9I GGNCC 2 cut(s) 138, 230
AsuHPI GGTGA 1 cut(s) 893
AsuII TTCGAA 1 cut(s) 10
AsuNHI GCTAGC 1 cut(s) 932
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 1 cut(s) 138
AvrII CCTAGG 1 cut(s) 430
BalI TGGCCA 1 cut(s) 821
BbsI GAAGAC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 221, 954
BccI CCATC 4 cut(s) 129, 487, 509, 561
BcoDI GTCTC 3 cut(s) 473, 707, 866
BfaI CTAG 6 cut(s) 177, 431, 524, 866, 933, 939
BfuAI ACCTGC 2 cut(s) 67, 869
BglII AGATCT 1 cut(s) 923
BisI GCNGC 3 cut(s) 63, 210, 943
BlnI CCTAGG 1 cut(s) 430
BlsI GCNGC 3 cut(s) 64, 211, 944
Bme18I GGWCC 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 677
BmgT120I GGNCC 2 cut(s) 138, 230
BmsI GCATC 3 cut(s) 250, 532, 637
BmtI GCTAGC 1 cut(s) 936
BpiI GAAGAC 1 cut(s) 466
BpmI CTGGAG 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 10
BpuEI CTTGAG 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 905
Bse1I ACTGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 2 cut(s) 140, 409
BseLI CCNNNNNNNGG 2 cut(s) 303, 905
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 5 cut(s) 47, 312, 374, 683, 696
BseNI ACTGG 1 cut(s) 389
BseRI GAGGAG 3 cut(s) 695, 722, 725
BseXI GCAGC 2 cut(s) 221, 954
BseYI CCCAGC 1 cut(s) 398
BshFI GGCC 3 cut(s) 232, 296, 821
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 2 cut(s) 141, 293
BslI CCNNNNNNNGG 2 cut(s) 303, 905
BsmAI GTCTC 3 cut(s) 473, 707, 866
BsnI GGCC 3 cut(s) 232, 296, 821
BsoBI CYCGRG 1 cut(s) 677
Bsp119I TTCGAA 1 cut(s) 10
Bsp143I GATC 4 cut(s) 97, 184, 402, 923
BspACI CCGC 3 cut(s) 62, 545, 784
BspANI GGCC 3 cut(s) 232, 296, 821
BspCNI CTCAG 5 cut(s) 46, 311, 373, 684, 697
BspMI ACCTGC 2 cut(s) 67, 869
BspOI GCTAGC 1 cut(s) 936
BspPI GGATC 2 cut(s) 192, 410
BspT104I TTCGAA 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 268
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 4 cut(s) 97, 184, 402, 923
BssT1I CCWWGG 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 242, 790
Bst6I CTCTTC 4 cut(s) 111, 746, 864, 908
BstBI TTCGAA 1 cut(s) 10
BstC8I GCNNGC 4 cut(s) 214, 275, 521, 934
BstDEI CTNAG 5 cut(s) 33, 298, 360, 692, 705
BstF5I GGATG 2 cut(s) 140, 409
BstHHI GCGC 1 cut(s) 921
BstKTI GATC 4 cut(s) 100, 187, 405, 926
BstMAI GTCTC 3 cut(s) 473, 707, 866
BstMBI GATC 4 cut(s) 97, 184, 402, 923
BstMWI GCNNNNNNNGC 4 cut(s) 404, 647, 783, 942
BstNSI RCATGY 2 cut(s) 277, 351
BstV1I GCAGC 2 cut(s) 221, 954
BstV2I GAAGAC 1 cut(s) 466
BstX2I RGATCY 1 cut(s) 923
BstYI RGATCY 1 cut(s) 923
BsuRI GGCC 3 cut(s) 232, 296, 821
BtsCI GGATG 2 cut(s) 140, 409
BtsIMutI CAGTG 1 cut(s) 786
BveI ACCTGC 2 cut(s) 67, 869
Cac8I GCNNGC 4 cut(s) 214, 275, 521, 934
CaiI CAGNNNCTG 1 cut(s) 482
CfoI GCGC 1 cut(s) 921
Cfr13I GGNCC 2 cut(s) 138, 230
Csp6I GTAC 2 cut(s) 219, 809
CspCI CAANNNNNGTGG 2 cut(s) 615, 650
CviAII CATG 3 cut(s) 86, 274, 348
CviQI GTAC 2 cut(s) 219, 809
DdeI CTNAG 5 cut(s) 33, 298, 360, 692, 705
DpnI GATC 4 cut(s) 99, 186, 404, 925
DpnII GATC 4 cut(s) 97, 184, 402, 923
EaeI YGGCCR 1 cut(s) 819
Eam1104I CTCTTC 4 cut(s) 111, 746, 864, 908
EarI CTCTTC 4 cut(s) 111, 746, 864, 908
Eco130I CCWWGG 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 677
EcoRI GAATTC 2 cut(s) 6, 158
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
FaeI CATG 3 cut(s) 89, 277, 351
FaiI YATR 7 cut(s) 87, 147, 275, 349, 468, 807, 959
FalI AAGNNNNNCTT 4 cut(s) 448, 480, 843, 875
FatI CATG 3 cut(s) 85, 273, 347
Fnu4HI GCNGC 3 cut(s) 63, 210, 943
FokI GGATG 2 cut(s) 147, 396
Fsp4HI GCNGC 3 cut(s) 63, 210, 943
FspBI CTAG 6 cut(s) 177, 431, 524, 866, 933, 939
GlaI GCGC 1 cut(s) 920
GluI GCNGC 3 cut(s) 63, 210, 943
GsaI CCCAGC 1 cut(s) 402
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 3 cut(s) 232, 296, 821
HapII CCGG 2 cut(s) 141, 293
HhaI GCGC 1 cut(s) 921
Hin1II CATG 3 cut(s) 89, 277, 351
Hin6I GCGC 1 cut(s) 919
HinP1I GCGC 1 cut(s) 919
HinfI GANTC 4 cut(s) 40, 121, 671, 769
HpaII CCGG 2 cut(s) 141, 293
HphI GGTGA 1 cut(s) 893
Hpy166II GTNNAC 2 cut(s) 80, 884
Hpy188I TCNGA 4 cut(s) 36, 94, 301, 774
Hpy188III TCNNGA 3 cut(s) 245, 763, 866
Hpy8I GTNNAC 2 cut(s) 80, 884
HpyAV CCTTC 4 cut(s) 296, 308, 368, 903
HpyCH4III ACNGT 2 cut(s) 242, 790
HpyCH4V TGCA 5 cut(s) 193, 273, 277, 347, 650
HpyF10VI GCNNNNNNNGC 4 cut(s) 404, 647, 783, 942
HpyF3I CTNAG 5 cut(s) 33, 298, 360, 692, 705
Hsp92II CATG 3 cut(s) 89, 277, 351
HspAI GCGC 1 cut(s) 919
Kzo9I GATC 4 cut(s) 97, 184, 402, 923
LmnI GCTCC 1 cut(s) 774
Lsp1109I GCAGC 2 cut(s) 221, 954
LweI GCATC 3 cut(s) 250, 532, 637
MaeI CTAG 6 cut(s) 177, 431, 524, 866, 933, 939
MaeIII GTNAC 4 cut(s) 379, 391, 434, 790
MalI GATC 4 cut(s) 99, 186, 404, 925
MboI GATC 4 cut(s) 97, 184, 402, 923
MfeI CAATTG 1 cut(s) 188
MflI RGATCY 1 cut(s) 923
MlsI TGGCCA 1 cut(s) 821
MluCI AATT 7 cut(s) 6, 25, 108, 158, 188, 225, 338
MluNI TGGCCA 1 cut(s) 821
MlyI GAGTC 2 cut(s) 34, 763
MmeI TCCRAC 1 cut(s) 183
Mox20I TGGCCA 1 cut(s) 821
MscI TGGCCA 1 cut(s) 821
MseI TTAA 2 cut(s) 450, 612
MslI CAYNNNNRTG 1 cut(s) 278
Msp20I TGGCCA 1 cut(s) 821
MspA1I CMGCKG 2 cut(s) 398, 656
MspI CCGG 2 cut(s) 141, 293
MunI CAATTG 1 cut(s) 188
MwoI GCNNNNNNNGC 4 cut(s) 404, 647, 783, 942
NdeII GATC 4 cut(s) 97, 184, 402, 923
NheI GCTAGC 1 cut(s) 932
NlaIII CATG 3 cut(s) 89, 277, 351
NspI RCATGY 2 cut(s) 277, 351
NspV TTCGAA 1 cut(s) 10
PaeI GCATGC 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 677
PaqCI CACCTGC 2 cut(s) 67, 869
PfeI GAWTC 2 cut(s) 121, 671
PkrI GCNGC 3 cut(s) 64, 211, 944
PleI GAGTC 2 cut(s) 34, 763
PpsI GAGTC 2 cut(s) 34, 763
PsiI TTATAA 1 cut(s) 468
PspFI CCCAGC 1 cut(s) 398
PspPI GGNCC 2 cut(s) 138, 230
PspXI VCTCGAGB 1 cut(s) 677
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 1 cut(s) 923
PvuII CAGCTG 2 cut(s) 398, 656
RsaI GTAC 2 cut(s) 220, 810
RsaNI GTAC 2 cut(s) 219, 809
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 2 cut(s) 450, 612
SatI GCNGC 3 cut(s) 63, 210, 943
Sau3AI GATC 4 cut(s) 97, 184, 402, 923
Sau96I GGNCC 2 cut(s) 138, 230
SchI GAGTC 2 cut(s) 34, 763
SfaNI GCATC 3 cut(s) 250, 532, 637
Sfr274I CTCGAG 1 cut(s) 677
SfuI TTCGAA 1 cut(s) 10
SinI GGWCC 1 cut(s) 138
SlaI CTCGAG 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 2 cut(s) 168, 677
SmoI CTYRAG 2 cut(s) 168, 677
SphI GCATGC 1 cut(s) 277
Sse9I AATT 7 cut(s) 6, 25, 108, 158, 188, 225, 338
SsiI CCGC 3 cut(s) 62, 545, 784
SspMI CTAG 6 cut(s) 177, 431, 524, 866, 933, 939
StyI CCWWGG 1 cut(s) 430
TaaI ACNGT 2 cut(s) 242, 790
TaqI TCGA 2 cut(s) 10, 678
TasI AATT 7 cut(s) 6, 25, 108, 158, 188, 225, 338
TatI WGTACW 1 cut(s) 218
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 121, 671
Tru1I TTAA 2 cut(s) 450, 612
Tru9I TTAA 2 cut(s) 450, 612
TscAI CASTG 1 cut(s) 793
TseI GCWGC 2 cut(s) 209, 942
TspDTI ATGAA 4 cut(s) 296, 684, 762, 768
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 1 cut(s) 793
VpaK11BI GGWCC 1 cut(s) 138
XapI RAATTY 3 cut(s) 6, 25, 158
XbaI TCTAGA 1 cut(s) 865
XceI RCATGY 2 cut(s) 277, 351
XhoI CTCGAG 1 cut(s) 677
XmaJI CCTAGG 1 cut(s) 430
XspI CTAG 6 cut(s) 177, 431, 524, 866, 933, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.