MD11G1138700.v1.1

cytochrome b6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0023598
Physical Location & Seq
Reverse (-)
12774325 .. 12774489
165 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1138700.v1.1.491

Sequence Viewer

Length: 165 bp
ATGATGGTCCTAATGATGATCCTGCACGTATTTAGCGTGTATCTCATCAGCAGCTGTAAAAAACCTCGTGAATTGACTTGGGTTACAAGTGTGGTTTTTGATGTATTGACCGTATCTTTTAGTGTAACTGGTTATTCCTTACCTCAGGACCAAATTGGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
Cytochrome_B

Protein Analysis

55

Amino Acids

6.16

Weight (kDa)

6.5

Isoelectric Point (pI)

18.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrome_B PF00033 1 - 54 5.6e-15 Cytochrome b/b6/petB
Cytochrom_B_N_2 PF13631 1 - 54 2.5e-12 Cytochrome b(N-terminal)/b6/petB
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023598)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00720
malus_domestica MD11G1138700.v1.1
prunus_persica Prupe.1G203800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 13
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 51
AspS9I GGNCC 2 cut(s) 7, 148
AvaII GGWCC 2 cut(s) 7, 148
AxyI CCTNAGG 1 cut(s) 144
BauI CACGAG 1 cut(s) 66
BbvI GCAGC 1 cut(s) 63
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
Bme18I GGWCC 2 cut(s) 7, 148
BmgT120I GGNCC 2 cut(s) 7, 148
BsaAI YACGTR 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 133
Bse21I CCTNAGG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 63
BsgI GTGCAG 1 cut(s) 8
Bsp143I GATC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 157
BspPI GGATC 1 cut(s) 13
BsrI ACTGG 1 cut(s) 133
BssMI GATC 1 cut(s) 18
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 144
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 63
Bsu36I CCTNAGG 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 7, 148
CviJI RGCY 1 cut(s) 54
CviKI_1 RGCY 1 cut(s) 54
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 7, 148
Eco81I CCTNAGG 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 68, 146
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 25
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 27
Kzo9I GATC 1 cut(s) 18
LpnPI CCDG 3 cut(s) 35, 114, 131
Lsp1109I GCAGC 1 cut(s) 63
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 82, 124
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MluCI AATT 2 cut(s) 71, 153
MnlI CCTC 2 cut(s) 75, 153
MspA1I CMGCKG 1 cut(s) 54
NdeII GATC 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PkrI GCNGC 1 cut(s) 53
Ppu21I YACGTR 1 cut(s) 28
PspPI GGNCC 2 cut(s) 7, 148
PstNI CAGNNNCTG 1 cut(s) 54
PvuII CAGCTG 1 cut(s) 54
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 2 cut(s) 7, 148
SetI ASST 4 cut(s) 30, 56, 67, 145
SgeI CNNG 9 cut(s) 34, 38, 49, 78, 80, 90, 99, 141, 158
SinI GGWCC 2 cut(s) 7, 148
Sse9I AATT 2 cut(s) 71, 153
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 30
TasI AATT 2 cut(s) 71, 153
TseI GCWGC 1 cut(s) 51
VpaK11BI GGWCC 2 cut(s) 7, 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.