Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0020405

Physical Location & Seq

Genomic Coordinates Forward (+)

13340383 .. 13341303

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1143000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCAACTTTCCTAAACCACACCAACCGAGCTCAAACCCTGTGGCTCACATGCCTAGCCTCTGCATTCCGTACATGTCTTGCTTGCACAATAGTTGCCCTAATCACCCTCTATGGTCCACAATCTCTCCAACGGCAAGTAGCATTCTCGGCATTCTCTTATGCAACACTAGGGCTTCTCGCCATCGTCCAAAGCATTGGGCCAGCCGTATTGAGCTTGTGGCTTATTGGGCCAACCCAACTTTCGACTGGCTCAACCACTTTAGCGGTGGGGATTGGTGCATTTGTGGTGGCTCTGCCAGAGTCTACTCACTTGGTGTCCAAACGTATAGCCTTGGGACAAATTGTGATTGTGTACATAAAAGCTTACATAGACAGGGGACATACAGAAGCTATCATGCATCCTGTCCACGTGGCAGCAAGTACGGGAATTGGTGTGTTGGCTTGTGTTTTGGCTTCGTTGATTCCCTTTCCAAGATTTGCTTCTCTAGAGGTTAAACAAAGCTCAGAGCTACTTGCTGAGAATGCTTCAAAAAGGCTCAAGCTCTTTGTAAAGGCCTTTTGGGCAGAAGAGAGCACATCCGCACTTGCTTCAGTTTCTCAAGCAAAATCCTTGGCTTCCACTGCAACTAAACTTTTCCAAACCATCGAATGCCACCAAGTAAGCAACTCTATGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FUSC_2

Protein Analysis

227

Amino Acids

24.13

Weight (kDa)

9.25

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020405)

Species	Orthologous Gene IDs
malus_domestica	MD11G1143000.v1.1
rosa_laevigata	RLG00000035671
rosa_multiflora	Rmu_ssc0000309.1_g000035
rosa_samantha	Rh5BG433700 Rh5CG456800 Rh5DG447100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	305
AciI	CCGC	2 cut(s)	266, 582
AcuI	CTGAAG	1 cut(s)	576
AcvI	CACGTG	1 cut(s)	412
AdeI	CACNNNGTG	1 cut(s)	316
AfaI	GTAC	3 cut(s)	73, 356, 424
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	531
AjuI	GAANNNNNNNTTGG	4 cut(s)	226, 258, 466, 498
AluBI	AGCT	7 cut(s)	32, 216, 365, 392, 504, 511, 544
AluI	AGCT	7 cut(s)	32, 216, 365, 392, 504, 511, 544
Alw21I	GWGCWC	2 cut(s)	34, 578
AoxI	GGCC	3 cut(s)	200, 230, 555
ApeKI	GCWGC	1 cut(s)	416
AspS9I	GGNCC	3 cut(s)	116, 200, 230
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	34
BbrPI	CACGTG	1 cut(s)	412
Bbv12I	GWGCWC	2 cut(s)	34, 578
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	2 cut(s)	191, 653
BceAI	ACGGC	2 cut(s)	149, 191
BfaI	CTAG	3 cut(s)	56, 170, 488
BglI	GCCNNNNNGGC	1 cut(s)	563
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	3 cut(s)	116, 200, 230
BmsI	GCATC	1 cut(s)	409
BpuEI	CTTGAG	2 cut(s)	524, 585
BsaAI	YACGTR	1 cut(s)	412
BsaJI	CCNNGG	2 cut(s)	333, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bse1I	ACTGG	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	333, 612
BseGI	GGATG	2 cut(s)	400, 578
BseMII	CTCAG	2 cut(s)	510, 519
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	428
BshFI	GGCC	3 cut(s)	202, 232, 557
BsiHKAI	GWGCWC	2 cut(s)	34, 578
BslFI	GGGAC	2 cut(s)	351, 393
BsmFI	GGGAC	2 cut(s)	351, 393
BsmI	GAATGC	5 cut(s)	65, 143, 152, 529, 656
BsnI	GGCC	3 cut(s)	202, 232, 557
Bsp1286I	GDGCHC	2 cut(s)	34, 578
Bsp1407I	TGTACA	1 cut(s)	354
BspACI	CCGC	2 cut(s)	266, 582
BspANI	GGCC	3 cut(s)	202, 232, 557
BspCNI	CTCAG	2 cut(s)	511, 518
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	333, 612
BssT1I	CCWWGG	2 cut(s)	333, 612
Bst6I	CTCTTC	1 cut(s)	564
BstAUI	TGTACA	1 cut(s)	354
BstBAI	YACGTR	1 cut(s)	412
BstC8I	GCNNGC	2 cut(s)	85, 204
BstDEI	CTNAG	2 cut(s)	505, 519
BstF5I	GGATG	2 cut(s)	400, 578
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 229, 524, 563, 623
BstNSI	RCATGY	2 cut(s)	54, 78
BstV1I	GCAGC	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	202, 232, 557
BtsCI	GGATG	2 cut(s)	400, 578
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	1 cut(s)	621
Cac8I	GCNNGC	2 cut(s)	85, 204
Cfr13I	GGNCC	3 cut(s)	116, 200, 230
Csp6I	GTAC	3 cut(s)	72, 355, 423
CspCI	CAANNNNNGTGG	2 cut(s)	23, 58
CviAII	CATG	3 cut(s)	51, 75, 397
CviQI	GTAC	3 cut(s)	72, 355, 423
DdeI	CTNAG	2 cut(s)	505, 519
DraIII	CACNNNGTG	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Ecl136II	GAGCTC	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	333, 612
Eco147I	AGGCCT	1 cut(s)	557
Eco24I	GRGCYC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	576
Eco72I	CACGTG	1 cut(s)	412
EcoICRI	GAGCTC	1 cut(s)	32
EcoT14I	CCWWGG	2 cut(s)	333, 612
EcoT22I	ATGCAT	2 cut(s)	402, 678
EcoT38I	GRGCYC	1 cut(s)	34
ErhI	CCWWGG	2 cut(s)	333, 612
FaeI	CATG	3 cut(s)	54, 78, 400
FalI	AAGNNNNNCTT	2 cut(s)	466, 498
FaqI	GGGAC	2 cut(s)	351, 393
FatI	CATG	3 cut(s)	50, 74, 396
FblI	GTMKAC	1 cut(s)	305
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	2 cut(s)	387, 565
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	3 cut(s)	56, 170, 488
GluI	GCNGC	1 cut(s)	417
HaeIII	GGCC	3 cut(s)	202, 232, 557
Hin1II	CATG	3 cut(s)	54, 78, 400
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	2 cut(s)	302, 463
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	4 cut(s)	119, 306, 355, 409
Hpy188I	TCNGA	1 cut(s)	508
Hpy188III	TCNNGA	1 cut(s)	488
Hpy8I	GTNNAC	4 cut(s)	119, 306, 355, 409
HpyCH4IV	ACGT	2 cut(s)	325, 411
HpyCH4V	TGCA	7 cut(s)	65, 87, 164, 281, 400, 626, 676
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 229, 524, 563, 623
HpyF3I	CTNAG	2 cut(s)	505, 519
HpySE526I	ACGT	2 cut(s)	325, 411
Hsp92II	CATG	3 cut(s)	54, 78, 400
LpnPI	CCDG	6 cut(s)	53, 216, 234, 312, 361, 417
Lsp1109I	GCAGC	1 cut(s)	428
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	3 cut(s)	56, 170, 488
MaeII	ACGT	2 cut(s)	325, 411
MboII	GAAGA	1 cut(s)	581
MhlI	GDGCHC	2 cut(s)	34, 578
MluCI	AATT	2 cut(s)	342, 429
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	3 cut(s)	70, 119, 484
Mph1103I	ATGCAT	2 cut(s)	402, 678
MseI	TTAA	2 cut(s)	495, 679
Mva1269I	GAATGC	5 cut(s)	65, 143, 152, 529, 656
MwoI	GCNNNNNNNGC	5 cut(s)	149, 229, 524, 563, 623
NlaIII	CATG	3 cut(s)	54, 78, 400
NmeAIII	GCCGAG	1 cut(s)	128
NsiI	ATGCAT	2 cut(s)	402, 678
NspI	RCATGY	2 cut(s)	54, 78
PceI	AGGCCT	1 cut(s)	557
PciI	ACATGT	1 cut(s)	74
PctI	GAATGC	5 cut(s)	65, 143, 152, 529, 656
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	418
PleI	GAGTC	1 cut(s)	310
PmaCI	CACGTG	1 cut(s)	412
PmlI	CACGTG	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	310
Ppu21I	YACGTR	1 cut(s)	412
PscI	ACATGT	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	34
PspCI	CACGTG	1 cut(s)	412
PspPI	GGNCC	3 cut(s)	116, 200, 230
RsaI	GTAC	3 cut(s)	73, 356, 424
RsaNI	GTAC	3 cut(s)	72, 355, 423
SacI	GAGCTC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	495, 679
SatI	GCNGC	1 cut(s)	417
Sau96I	GGNCC	3 cut(s)	116, 200, 230
SchI	GAGTC	1 cut(s)	311
SduI	GDGCHC	2 cut(s)	34, 578
SfaNI	GCATC	1 cut(s)	409
SinI	GGWCC	1 cut(s)	116
SmlI	CTYRAG	2 cut(s)	539, 600
SmoI	CTYRAG	2 cut(s)	539, 600
Sse9I	AATT	2 cut(s)	342, 429
SseBI	AGGCCT	1 cut(s)	557
SsiI	CCGC	2 cut(s)	266, 582
SspMI	CTAG	3 cut(s)	56, 170, 488
SstI	GAGCTC	1 cut(s)	34
StuI	AGGCCT	1 cut(s)	557
StyI	CCWWGG	2 cut(s)	333, 612
TaiI	ACGT	2 cut(s)	328, 414
TaqI	TCGA	2 cut(s)	245, 648
TasI	AATT	2 cut(s)	342, 429
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	2 cut(s)	495, 679
Tru9I	TTAA	2 cut(s)	495, 679
TscAI	CASTG	1 cut(s)	628
TseI	GCWGC	1 cut(s)	416
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	628
VpaK11BI	GGWCC	1 cut(s)	116
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	2 cut(s)	54, 78
XcmI	CCANNNNNNNNNTGG	2 cut(s)	245, 265
XmiI	GTMKAC	1 cut(s)	305
XspI	CTAG	3 cut(s)	56, 170, 488
Zsp2I	ATGCAT	2 cut(s)	402, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.