Rh5DG447100

Fusaric acid resistance protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0020405
Physical Location & Seq
Reverse (-)
71299318 .. 71299884
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG447100.1

Sequence Viewer

Length: 567 bp
ATGGCAACCTCTCAAGACCAAACCGACCGTGCCCGAGCCTTGTGGCTCACATGCCTAGCCTCGACCTTCCGAACCGCTCTAGCTTGCACCATAGTAGCCATCACCACCCTCTACGGCCCTTCCTCTCTCCGAAACCAAGTAGCTTTCCCTACATTCTCGTACGTGACTGTTATCCTCATTGCTCCTGATGCAACTCTAGGTGACACATTCCGTGGATTCTGGCTCGCGCTCTACGCCACTATCCAGAGCGTCGGGCCGGCTGCCTTGAGCCTCTGGCTTATTGGACCAGCTCGCCTTTCTAGCAGCACGACGGCTCTGGCTGTCGGTCTGGCAGCATTTGTAGTGGTTCTGCCTGGAGAAGCTACTCACTTGGTGTCCAAGCGCATAGCCTTGGGACAGATTGTGATTATGTACGTATTTGCTTTCATAAAGGGTGCGAGTACGGAGGCCATCATGCACCCTGTGCACGTGGCAGCGAGTACGGCAGTTGGGGTCTTGGCTAGTGTTCTGGCGTTGTTAATTCCATTCCCACGCTTGGCTTGTCGAGAGGTACTACTAGCTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FUSC_2

Protein Analysis

188

Amino Acids

19.86

Weight (kDa)

9.56

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020405)

Species Orthologous Gene IDs
malus_domestica MD11G1143000.v1.1
rosa_laevigata RLG00000035671
rosa_multiflora Rmu_ssc0000309.1_g000035
rosa_samantha Rh5BG433700 Rh5CG456800 Rh5DG447100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 77
AccII CGCG 1 cut(s) 227
AciI CCGC 1 cut(s) 75
AcvI CACGTG 1 cut(s) 469
AdeI CACNNNGTG 2 cut(s) 373, 463
AfaI GTAC 5 cut(s) 161, 413, 442, 481, 552
AfiI CCNNNNNNNGG 1 cut(s) 535
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 5 cut(s) 83, 143, 290, 362, 560
AluI AGCT 5 cut(s) 83, 143, 290, 362, 560
Alw21I GWGCWC 1 cut(s) 468
Alw44I GTGCAC 1 cut(s) 464
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 3 cut(s) 115, 254, 447
ApaLI GTGCAC 1 cut(s) 464
ApeKI GCWGC 4 cut(s) 260, 303, 332, 473
AspLEI GCGC 2 cut(s) 229, 384
AspS9I GGNCC 3 cut(s) 116, 254, 284
AsuHPI GGTGA 2 cut(s) 94, 212
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 2 cut(s) 34, 468
BbrPI CACGTG 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 4 cut(s) 247, 315, 344, 485
BccI CCATC 2 cut(s) 107, 458
BceAI ACGGC 3 cut(s) 130, 327, 498
BciT130I CCWGG 1 cut(s) 354
BfaI CTAG 7 cut(s) 56, 80, 197, 300, 501, 557, 565
BisI GCNGC 4 cut(s) 261, 304, 333, 474
BlsI GCNGC 4 cut(s) 262, 305, 334, 475
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 3 cut(s) 116, 254, 284
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 286
BsaAI YACGTR 3 cut(s) 163, 415, 469
BsaJI CCNNGG 2 cut(s) 211, 390
Bsc4I CCNNNNNNNGG 1 cut(s) 535
Bse118I RCCGGY 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 211, 390
BseLI CCNNNNNNNGG 1 cut(s) 535
BseMI GCAATG 1 cut(s) 177
BseSI GKGCMC 2 cut(s) 34, 468
BseXI GCAGC 4 cut(s) 247, 315, 344, 485
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 3 cut(s) 117, 256, 449
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 468
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 1 cut(s) 257
BsiWI CGTACG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 3 cut(s) 117, 256, 449
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 34, 468
BspACI CCGC 1 cut(s) 75
BspANI GGCC 3 cut(s) 117, 256, 449
BspFNI CGCG 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 211, 390
BssT1I CCWWGG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 29, 169
BstAPI GCANNNNNTGC 1 cut(s) 463
BstBAI YACGTR 3 cut(s) 163, 415, 469
BstC8I GCNNGC 5 cut(s) 85, 225, 258, 292, 562
BstDSI CCRYGG 1 cut(s) 211
BstFNI CGCG 1 cut(s) 227
BstHHI GCGC 2 cut(s) 229, 384
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 5 cut(s) 188, 233, 300, 463, 482
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 352
BstSLI GKGCMC 2 cut(s) 34, 468
BstSNI TACGTA 1 cut(s) 415
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 247, 315, 344, 485
BsuRI GGCC 3 cut(s) 117, 256, 449
BtgI CCRYGG 1 cut(s) 211
Cac8I GCNNGC 5 cut(s) 85, 225, 258, 292, 562
CfoI GCGC 2 cut(s) 229, 384
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 3 cut(s) 116, 254, 284
CseI GACGC 1 cut(s) 238
Csp6I GTAC 5 cut(s) 160, 412, 441, 480, 551
CviAII CATG 2 cut(s) 51, 454
CviQI GTAC 5 cut(s) 160, 412, 441, 480, 551
DraIII CACNNNGTG 2 cut(s) 373, 463
Eco105I TACGTA 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 284
Eco72I CACGTG 1 cut(s) 469
Eco88I CYCGRG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 2 cut(s) 54, 457
FaiI YATR 6 cut(s) 52, 92, 386, 410, 428, 455
FaqI GGGAC 1 cut(s) 408
FatI CATG 2 cut(s) 50, 453
Fnu4HI GCNGC 4 cut(s) 261, 304, 333, 474
Fsp4HI GCNGC 4 cut(s) 261, 304, 333, 474
FspBI CTAG 7 cut(s) 56, 80, 197, 300, 501, 557, 565
GlaI GCGC 2 cut(s) 228, 383
GluI GCNGC 4 cut(s) 261, 304, 333, 474
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 3 cut(s) 117, 256, 449
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 238
HhaI GCGC 2 cut(s) 229, 384
Hin1II CATG 2 cut(s) 54, 457
Hin6I GCGC 2 cut(s) 227, 382
HinP1I GCGC 2 cut(s) 227, 382
HinfI GANTC 1 cut(s) 216
HpaII CCGG 1 cut(s) 257
HphI GGTGA 2 cut(s) 94, 212
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 2 cut(s) 71, 131
Hpy188III TCNNGA 4 cut(s) 14, 185, 244, 545
Hpy8I GTNNAC 1 cut(s) 466
Hpy99I CGWCG 2 cut(s) 254, 313
HpyAV CCTTC 2 cut(s) 76, 129
HpyCH4III ACNGT 2 cut(s) 29, 169
HpyCH4IV ACGT 3 cut(s) 162, 414, 468
HpyCH4V TGCA 4 cut(s) 87, 191, 457, 466
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 233, 300, 463, 482
HpySE526I ACGT 3 cut(s) 162, 414, 468
Hsp92II CATG 2 cut(s) 54, 457
HspAI GCGC 2 cut(s) 227, 382
KroI GCCGGC 1 cut(s) 256
KroNI GCCGGC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 4 cut(s) 247, 315, 344, 485
LweI GCATC 1 cut(s) 178
MaeI CTAG 7 cut(s) 56, 80, 197, 300, 501, 557, 565
MaeII ACGT 3 cut(s) 162, 414, 468
MaeIII GTNAC 2 cut(s) 163, 200
MbiI CCGCTC 1 cut(s) 77
MhlI GDGCHC 2 cut(s) 34, 468
MluCI AATT 1 cut(s) 519
MnlI CCTC 8 cut(s) 19, 70, 119, 133, 185, 281, 439, 541
MroNI GCCGGC 1 cut(s) 256
MseI TTAA 1 cut(s) 518
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 5 cut(s) 188, 233, 300, 463, 482
NaeI GCCGGC 1 cut(s) 258
NgoMIV GCCGGC 1 cut(s) 256
NlaIII CATG 2 cut(s) 54, 457
NmuCI GTSAC 2 cut(s) 163, 200
NspI RCATGY 1 cut(s) 54
PdiI GCCGGC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 216
Pfl23II CGTACG 1 cut(s) 159
PkrI GCNGC 4 cut(s) 262, 305, 334, 475
PmaCI CACGTG 1 cut(s) 469
PmlI CACGTG 1 cut(s) 469
Ppu21I YACGTR 3 cut(s) 163, 415, 469
Psp6I CCWGG 1 cut(s) 352
PspCI CACGTG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 352
PspLI CGTACG 1 cut(s) 159
PspPI GGNCC 3 cut(s) 116, 254, 284
RsaI GTAC 5 cut(s) 161, 413, 442, 481, 552
RsaNI GTAC 5 cut(s) 160, 412, 441, 480, 551
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 4 cut(s) 261, 304, 333, 474
Sau96I GGNCC 3 cut(s) 116, 254, 284
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 2 cut(s) 34, 468
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 12, 265
SmoI CTYRAG 2 cut(s) 12, 265
SnaBI TACGTA 1 cut(s) 415
Sse9I AATT 1 cut(s) 519
SsiI CCGC 1 cut(s) 75
SspMI CTAG 7 cut(s) 56, 80, 197, 300, 501, 557, 565
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 2 cut(s) 29, 169
TaiI ACGT 3 cut(s) 165, 417, 471
TaqI TCGA 2 cut(s) 62, 544
TaqII GACCGA 1 cut(s) 314
TasI AATT 1 cut(s) 519
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TseFI GTSAC 2 cut(s) 163, 200
TseI GCWGC 4 cut(s) 260, 303, 332, 473
Tsp45I GTSAC 2 cut(s) 163, 200
TspDTI ATGAA 1 cut(s) 415
TspGWI ACGGA 2 cut(s) 200, 458
VneI GTGCAC 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 284
XceI RCATGY 1 cut(s) 54
XspI CTAG 7 cut(s) 56, 80, 197, 300, 501, 557, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.