MD11G1237100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015154
Physical Location & Seq
Forward (+)
34482521 .. 34485166
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1237100.v1.1.491

Sequence Viewer

Length: 297 bp
ATGGCGAAGAACAGGAACAAGAAGAAGAAAACCGGCGCCGCTTCAATGGACATCGCCGAAGATCCCGTCTCAGATCTGCCTCAAGCAATGGATACGTCAGAGTCTGGAGCTCATAACCCTAGTGCTGCTGCTTCCAATTTAAAGATAAAGGGAAGACAAATGAAGAGATCGAAAAATGCTCGAAAGAAAAAAGCCGTTGTGAGAGCTATATCTAAAACAGAGAAGGCTGTTGAGAAAGTTAAGAAGCATGAAAACAAAACCTTGAGAACTCAATCTGCAAAGTTGCTGTATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.79

Weight (kDa)

10.35

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015154)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27380
fragaria_vesca FvH4_3g21000
malus_domestica MD11G1237100.v1.1
prunus_persica Prupe.4G190300_v2.0.a1
pyrus_communis pycom11g20850
rosa_chinensis RchiOBHm_Chr5g0035981
rosa_laevigata RLG00000033657
rosa_multiflora Rmu_sc0000084.1_g000040 Rmu_sc0001493.1_g000017
rosa_roxburghii Rroxscaffold_180G00433340 Rroxscaffold_1G00044770 Rroxscaffold_2G00121900 Rroxscaffold_7G00213760
rosa_rugosa Rorug05G0151900
rosa_samantha Rh5AG245900
rosa_wichuraiana Rw5G022590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AciI CCGC 1 cut(s) 39
AclWI GGATC 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 36
AgsI TTSAA 1 cut(s) 45
AluBI AGCT 2 cut(s) 110, 206
AluI AGCT 2 cut(s) 110, 206
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 104
ApeKI GCWGC 2 cut(s) 125, 128
ArsI GACNNNNNNTTYG 2 cut(s) 51, 83
AspLEI GCGC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 2 cut(s) 112, 115
BceAI ACGGC 1 cut(s) 179
BciVI GTATCC 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 39
BfuI GTATCC 1 cut(s) 85
BglII AGATCT 1 cut(s) 73
BisI GCNGC 3 cut(s) 39, 126, 129
BlsI GCNGC 3 cut(s) 40, 127, 130
BmiI GGNNCC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 2 cut(s) 66, 283
BsaHI GRCGYC 1 cut(s) 36
Bse118I RCCGGY 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 93
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 112, 115
BshNI GGYRCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 73
BsmBI CGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 3 cut(s) 61, 73, 167
BspACI CCGC 1 cut(s) 39
BspCNI CTCAG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
BssMI GATC 3 cut(s) 61, 73, 167
BssNI GRCGYC 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 3 cut(s) 64, 76, 170
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 3 cut(s) 61, 73, 167
BstV1I GCAGC 2 cut(s) 112, 115
BstV2I GAAGAC 1 cut(s) 160
BstX2I RGATCY 2 cut(s) 61, 73
BstYI RGATCY 2 cut(s) 61, 73
BsuI GTATCC 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 104
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 32
CviAII CATG 1 cut(s) 248
CviJI RGCY 4 cut(s) 110, 194, 206, 227
CviKI_1 RGCY 4 cut(s) 110, 194, 206, 227
DdeI CTNAG 1 cut(s) 70
DinI GGCGCC 1 cut(s) 37
DpnI GATC 3 cut(s) 63, 75, 169
DpnII GATC 3 cut(s) 61, 73, 167
DraI TTTAAA 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 112
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 1 cut(s) 251
FaiI YATR 4 cut(s) 114, 209, 249, 291
FatI CATG 1 cut(s) 247
Fnu4HI GCNGC 3 cut(s) 39, 126, 129
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 3 cut(s) 39, 126, 129
FspBI CTAG 1 cut(s) 120
GlaI GCGC 1 cut(s) 37
GluI GCNGC 3 cut(s) 39, 126, 129
GsuI CTGGAG 1 cut(s) 126
HaeII RGCGCY 1 cut(s) 39
HapII CCGG 1 cut(s) 33
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 1 cut(s) 251
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 73, 100
Hpy188III TCNNGA 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 278
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 95
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 1 cut(s) 251
HspAI GCGC 1 cut(s) 36
KasI GGCGCC 1 cut(s) 35
Kzo9I GATC 3 cut(s) 61, 73, 167
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 2 cut(s) 46, 90
Lsp1109I GCAGC 2 cut(s) 112, 115
MaeI CTAG 1 cut(s) 120
MaeII ACGT 1 cut(s) 95
MalI GATC 3 cut(s) 63, 75, 169
MboI GATC 3 cut(s) 61, 73, 167
MboII GAAGA 6 cut(s) 19, 34, 37, 71, 165, 175
MflI RGATCY 2 cut(s) 61, 73
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 1 cut(s) 136
Mly113I GGCGCC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 1 cut(s) 90
MseI TTAA 2 cut(s) 140, 240
MspI CCGG 1 cut(s) 33
NarI GGCGCC 1 cut(s) 36
NdeII GATC 3 cut(s) 61, 73, 167
NlaIII CATG 1 cut(s) 251
NlaIV GGNNCC 1 cut(s) 37
PkrI GCNGC 3 cut(s) 40, 127, 130
PleI GAGTC 1 cut(s) 109
PluTI GGCGCC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 2 cut(s) 61, 73
SacI GAGCTC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 140, 240
SatI GCNGC 3 cut(s) 39, 126, 129
Sau3AI GATC 3 cut(s) 61, 73, 167
SchI GAGTC 1 cut(s) 110
SduI GDGCHC 1 cut(s) 112
SetI ASST 4 cut(s) 98, 112, 208, 263
SfoI GGCGCC 1 cut(s) 37
SmlI CTYRAG 2 cut(s) 81, 262
SmoI CTYRAG 2 cut(s) 81, 262
Sse9I AATT 1 cut(s) 136
SsiI CCGC 1 cut(s) 39
SspDI GGCGCC 1 cut(s) 35
SspMI CTAG 1 cut(s) 120
SstI GAGCTC 1 cut(s) 112
TaiI ACGT 1 cut(s) 98
TaqI TCGA 2 cut(s) 170, 181
TasI AATT 1 cut(s) 136
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 140, 240
Tru9I TTAA 2 cut(s) 140, 240
TseI GCWGC 2 cut(s) 125, 128
TspDTI ATGAA 2 cut(s) 176, 264
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.