Rmu_sc0000084.1_g000040

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000084.1
Physical Location & Seq
Reverse (-)
167002 .. 168387
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000084.1_g000040.1.cds

Sequence Viewer

Length: 297 bp
atggcgaagaacaggagcaagaagaaaagaaaggacacggattcaatggacgtcacagaattgcccgtttcagatgcccctcaagaaatggatacttcagagtctggggctcaaaacccaagtggtgctgcttccaatttaaagataaaggggagacaaatgaagagaaccaagaatgctcggaagaagaaagctgtagtaagagctatatcgaaaagagagaaggctgttgagaaagtattgaagcatgaaagcaaaaccttgagaactcaatctgcaaaactgctatacgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.98

Weight (kDa)

10.32

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015154)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 51
AgsI TTSAA 2 cut(s) 45, 244
AluBI AGCT 2 cut(s) 194, 206
AluI AGCT 2 cut(s) 194, 206
Alw26I GTCTC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 115
BciVI GTATCC 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 148
BfmI CTRYAG 1 cut(s) 195
BfuI GTATCC 1 cut(s) 85
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmsI GCATC 1 cut(s) 64
BpuEI CTTGAG 2 cut(s) 66, 283
BsaHI GRCGYC 1 cut(s) 51
BseXI GCAGC 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 148
BsmI GAATGC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 112
BssNI GRCGYC 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 51
BstMAI GTCTC 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 115
BsuI GTATCC 1 cut(s) 85
CaiI CAGNNNCTG 1 cut(s) 104
CviAII CATG 1 cut(s) 248
CviJI RGCY 4 cut(s) 110, 194, 206, 227
CviKI_1 RGCY 4 cut(s) 110, 194, 206, 227
DraI TTTAAA 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 112
FaeI CATG 1 cut(s) 251
FaiI YATR 3 cut(s) 209, 249, 289
FatI CATG 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 1 cut(s) 251
HinfI GANTC 2 cut(s) 41, 101
Hpy188I TCNGA 3 cut(s) 73, 100, 183
Hpy188III TCNNGA 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 1 cut(s) 251
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 1 cut(s) 90
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 64
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 52
MboII GAAGA 5 cut(s) 19, 34, 175, 196, 199
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 2 cut(s) 59, 136
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 1 cut(s) 90
MseI TTAA 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 181
NlaIII CATG 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 52
PctI GAATGC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 129
SchI GAGTC 1 cut(s) 110
SduI GDGCHC 1 cut(s) 112
SetI ASST 4 cut(s) 54, 196, 208, 263
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 195
SmlI CTYRAG 2 cut(s) 81, 262
SmoI CTYRAG 2 cut(s) 81, 262
Sse9I AATT 2 cut(s) 59, 136
TaiI ACGT 1 cut(s) 54
TaqI TCGA 1 cut(s) 212
TasI AATT 2 cut(s) 59, 136
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 176, 264
TspGWI ACGGA 1 cut(s) 53
ZraI GACGTC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.