Rroxscaffold_180G00433340

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000180
Physical Location & Seq
Reverse (-)
168395 .. 169408
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_180G00433340.1

Sequence Viewer

Length: 327 bp
ATGGCGTTAAGAGATGAAGCAATTTACACCCGTCAGGTGCTTTCATTATACCGGGGCTTTGGGACAAAGAACCTGCAGTTCTTTATTTCACAATTCTTCTACTTCTATGGATATAGGTTTTTTAAGAGGTTGTACTTGAATGAAAGTGGAACTAGTACAGTCATAGCGACACAGATAAAAGGTAGACAAATGAAGAGAACCAAGAATGCTCGGAAGAAGAAAGCTATAGTAACAGCTATATTGAAAAGAGAGAAGGTTGTTGCAAAAGTATTGAAGCATGAAAGCAAAACCTTGAGAACTCAATCCACAAAATTGCTAGATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.74

Weight (kDa)

10.56

Isoelectric Point (pI)

27.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015154)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 184
AfaI GTAC 2 cut(s) 134, 157
AgsI TTSAA 3 cut(s) 139, 244, 274
AhlI ACTAGT 1 cut(s) 152
AluBI AGCT 2 cut(s) 224, 236
AluI AGCT 2 cut(s) 224, 236
AsuC2I CCSGG 1 cut(s) 53
BcnI CCSGG 1 cut(s) 53
BcuI ACTAGT 1 cut(s) 152
BfaI CTAG 2 cut(s) 153, 317
BfmI CTRYAG 2 cut(s) 74, 225
BfuAI ACCTGC 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 313
BpuMI CCSGG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 76
BsmI GAATGC 1 cut(s) 211
BspMAI CTGCAG 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 2 cut(s) 74, 225
BveI ACCTGC 1 cut(s) 81
Csp6I GTAC 2 cut(s) 133, 156
CviAII CATG 1 cut(s) 278
CviJI RGCY 3 cut(s) 57, 224, 236
CviKI_1 RGCY 3 cut(s) 57, 224, 236
CviQI GTAC 2 cut(s) 133, 156
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
FaeI CATG 1 cut(s) 281
FaiI YATR 7 cut(s) 49, 108, 114, 164, 227, 239, 279
FaqI GGGAC 1 cut(s) 76
FatI CATG 1 cut(s) 277
FblI GTMKAC 1 cut(s) 184
FspBI CTAG 2 cut(s) 153, 317
HapII CCGG 1 cut(s) 52
Hin1II CATG 1 cut(s) 281
HpaII CCGG 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 213
Hpy8I GTNNAC 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 76, 263
Hsp92II CATG 1 cut(s) 281
LpnPI CCDG 3 cut(s) 20, 65, 86
MaeI CTAG 2 cut(s) 153, 317
MaeIII GTNAC 1 cut(s) 229
MboII GAAGA 4 cut(s) 88, 205, 226, 229
MluCI AATT 3 cut(s) 21, 92, 311
MnlI CCTC 1 cut(s) 120
MseI TTAA 2 cut(s) 8, 123
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 53
NlaIII CATG 1 cut(s) 281
PctI GAATGC 1 cut(s) 211
PstI CTGCAG 1 cut(s) 78
RsaI GTAC 2 cut(s) 134, 157
RsaNI GTAC 2 cut(s) 133, 156
SaqAI TTAA 2 cut(s) 8, 123
ScrFI CCNGG 1 cut(s) 53
SetI ASST 9 cut(s) 39, 75, 119, 131, 184, 226, 238, 258, 293
SfcI CTRYAG 2 cut(s) 74, 225
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
SpeI ACTAGT 1 cut(s) 152
Sse9I AATT 3 cut(s) 21, 92, 311
SspMI CTAG 2 cut(s) 153, 317
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 160
TasI AATT 3 cut(s) 21, 92, 311
TatI WGTACW 2 cut(s) 132, 155
Tru1I TTAA 2 cut(s) 8, 123
Tru9I TTAA 2 cut(s) 8, 123
TspDTI ATGAA 5 cut(s) 30, 33, 156, 206, 294
XmiI GTMKAC 1 cut(s) 184
XspI CTAG 2 cut(s) 153, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.