MD11G1289000.v1.1

Protein ROOT PRIMORDIUM DEFECTIVE 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0014611
Physical Location & Seq
Reverse (-)
40865278 .. 40868647
3370 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1289000.v1.1.491

Sequence Viewer

Length: 1806 bp
ATGCTTTCCAAAACGCGGTCAATCTCTTCCTATCTGCACACCCGCAAACCCACTCTCACACCCAGCACCCACCCAGCAACCCACCTCCAATCCCAATCAATCTCGAGCCTCAAAGTCGTATGGCGCAAGGACCAGAAGCTGGACCAGGCAATCGAAAACGACAAGCCCTACAAGCTCTGCGCCCGCGTCGTCAAGGAGGTCCACAACGAACCGGGTCGGGTCATCCCGCTCCGGTACCTCGAAAATCGGCGAGAGAGGCTGCGGCTCAACATCAAAGTCAAGACCTTTCTTAGGAGAAACCCAGGTTTGTTTGATGTTTACTATGATAGGATTAAACCCAAATCGGAACCGGTTCAGTTTCTTCGATTTAGCGATAGGTTAAGGATGTTTCTCGAGGAGGAGGAGAGGATTTTTAAGGAAAATGAGCCGTTGATTGTGTCTAAATTGTGTAAATTGCTGATGATGTGTAGGGATAGGGTTGTTAGTGTTGATAAATTGGTTCATGTGAAGAGGGAATTCGGGTTTCCGAACGATTTCTTGGTTAGCTTGGTGCCCAAGTATCCGCAGTATTTTCGGATACTTGGGTGCCCCGGAGAGGAGAATTGTTATCTGGAATTGGTTTCGTGGAACCCCGAGTTTGCGAAATCAGTGATTGAGAGGAGGGCAGAAGAGGAGTCGAATTTGACAGGGATTCGGGTTCGGCCTAATTTTAACTATAGGCTGCCATCAGGATTTTTCTTGAAGAAGGAAATGAGGGAGTGGGTTAGGGATTGGGTGGAAATGGATTACATTTCTCCGTATGAGGATGTATCGAAATTGGATCAAGCTTCGCAGGAAATGGAGAAGAGGACGGTTGGAGTTTTTCATGAGTTGTTGTCGTTGTCTTTATTTAAGAGGATTCCTGTGCCGATATTGGGGAAATTTAGTGACGAGTATAGATTTTCGAATGCATTCTCGAATGCCTTCACAAGGCACGCGGGGATATTCTATCTGTCGTTGAAGGGAGGGATTAAGACGGCGGTGCTGAGGGAAGCGTACAAGGATGATCAGTTGATTGACCGGGATCCATTGCTAGAGATAAAGGACAAGTTTGCAGAGCTATTGGAGGAGGGATGGAGGGGGAGACGAGAGCAGTTGCGGTTGCAAAGGGAAGAGGTTGAGAAGGACAAGGAGATGATGACAGTTGAATTGATGGCAATGACACGTCAGATTGTCTTGGCAGTGGTAGAAAGTTTGGTAGGAGCAAGGTCGGTTGTGGAAACACCATTTGGGAGAGTTTGCACTTCACCTAACACAAACAGAGTCTTCACACCAAATGAATGGGAATCAGTAAACCATTCAGAACCTGAAGCTCATTCCCTTGCTTCCCTACTCTACCTGCCGAAGATGGAGGCGCAGCCTCTATTCCCACCTGTCCGCCCTCTCTGTAGATCACAGTTTGCCCTTGCTAACTATGCTTGCTCGATACTCCCCTTTACTCCGATGCCCCTGCCAACACCCCCCTCTCCTCCTCCCCCTTCTCCTCCCAATGATGATGGACAGGAAGAGCAACATGGCCATGGACACGGACATGATCACGGGCATAGACATGTCCATCATAGGCACAGGCATCATGTGCATGATTCCATACCTGCAGAAGATAATTGTTGTAGGTGGTTAACCCAGCTGGATAATCAATGTGTGTGTGAGCTGCTGGCTCACCTGCCTAACTTCCTCGTTAGGCCTGCTCATGTGTACTCTGTGGTTATCGGAGAAACTTGCACCGTTACCTACACGTGCGGAACCCCGGTCAGGATAAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

602

Amino Acids

69.88

Weight (kDa)

8.61

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 43 - 372 3.8e-110 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014611)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63090
fragaria_vesca FvH4_2g23842
malus_domestica MD03G1268200.v1.1 MD11G1289000.v1.1
prunus_persica Prupe.8G243800_v2.0.a1
pyrus_communis pycom03g21410 pycom11g25640
rosa_chinensis RchiOBHm_Chr6g0291451
rosa_laevigata RLG00000012113
rosa_multiflora Rmu_sc0003296.1_g000003
rosa_roxburghii Rroxscaffold_7G00176040
rosa_rugosa Rorug06G0219500
rosa_samantha Rh6AG331800 Rh6BG338700 Rh6CG344900 Rh6DG332000
rosa_wichuraiana Rw6G028800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1710
Acc36I ACCTGC 3 cut(s) 1386, 1639, 1710
Acc65I GGTACC 1 cut(s) 234
AccB1I GGYRCC 3 cut(s) 234, 550, 585
AccB7I CCANNNNNTGG 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 229
AccII CGCG 3 cut(s) 16, 186, 977
AclWI GGATC 3 cut(s) 828, 1058, 1071
AcoI YGGCCR 1 cut(s) 1555
AcsI RAATTY 3 cut(s) 515, 679, 920
AcuI CTGAAG 1 cut(s) 1368
AcvI CACGTG 1 cut(s) 1776
AfaI GTAC 3 cut(s) 236, 1037, 1736
AfiI CCNNNNNNNGG 7 cut(s) 15, 139, 291, 595, 914, 969, 1791
AflIII ACRYGT 3 cut(s) 1202, 1588, 1773
AgeI ACCGGT 1 cut(s) 349
AgsI TTSAA 3 cut(s) 742, 1000, 1187
AjiI CACGTC 1 cut(s) 1205
AjnI CCWGG 2 cut(s) 144, 301
AjuI GAANNNNNNNTTGG 4 cut(s) 521, 553, 1251, 1283
AluBI AGCT 8 cut(s) 139, 175, 546, 827, 1099, 1352, 1666, 1690
AluI AGCT 8 cut(s) 139, 175, 546, 827, 1099, 1352, 1666, 1690
Alw26I GTCTC 1 cut(s) 1117
AlwI GGATC 3 cut(s) 828, 1058, 1071
AlwNI CAGNNNCTG 2 cut(s) 139, 1346
Ama87I CYCGRG 3 cut(s) 103, 392, 632
AoxI GGCC 3 cut(s) 701, 1555, 1721
ApeKI GCWGC 4 cut(s) 259, 721, 1396, 1690
ApoI RAATTY 3 cut(s) 515, 679, 920
AsiGI ACCGGT 1 cut(s) 349
Asp700I GAANNNNTTC 4 cut(s) 351, 533, 950, 962
Asp718I GGTACC 1 cut(s) 234
AspLEI GCGC 3 cut(s) 126, 182, 1396
AspS9I GGNCC 3 cut(s) 130, 142, 199
AsuC2I CCSGG 4 cut(s) 213, 591, 1061, 1787
AsuHPI GGTGA 2 cut(s) 1278, 1691
AsuII TTCGAA 1 cut(s) 944
AvaI CYCGRG 3 cut(s) 103, 392, 632
AvaII GGWCC 3 cut(s) 130, 142, 199
BaeGI GKGCMC 2 cut(s) 555, 590
BaeI ACNNNNGTAYC 2 cut(s) 569, 602
BalI TGGCCA 1 cut(s) 1557
BamHI GGATCC 1 cut(s) 1063
BanI GGYRCC 3 cut(s) 234, 550, 585
BbrPI CACGTG 1 cut(s) 1776
BbsI GAAGAC 1 cut(s) 1297
BbvCI CCTCAGC 1 cut(s) 1025
BbvI GCAGC 4 cut(s) 246, 708, 1408, 1677
BccI CCATC 6 cut(s) 733, 1107, 1186, 1381, 1529, 1602
BceAI ACGGC 2 cut(s) 412, 1032
BcgI CGANNNNNNTGC 4 cut(s) 554, 588, 1471, 1505
BciT130I CCWGG 2 cut(s) 146, 303
BciVI GTATCC 2 cut(s) 570, 570
BclI TGATCA 2 cut(s) 1045, 1573
BcnI CCSGG 4 cut(s) 213, 591, 1061, 1787
BcoDI GTCTC 1 cut(s) 1117
BfaI CTAG 1 cut(s) 1073
BfmI CTRYAG 3 cut(s) 715, 1426, 1632
BfuAI ACCTGC 3 cut(s) 1386, 1639, 1710
BfuI GTATCC 2 cut(s) 570, 570
BisI GCNGC 5 cut(s) 260, 263, 722, 1397, 1691
BlsI GCNGC 5 cut(s) 261, 264, 723, 1398, 1692
Bme1390I CCNGG 6 cut(s) 146, 213, 303, 591, 1061, 1787
Bme18I GGWCC 3 cut(s) 130, 142, 199
BmeT110I CYCGRG 3 cut(s) 103, 392, 632
BmgBI CACGTC 1 cut(s) 1205
BmgT120I GGNCC 3 cut(s) 130, 142, 199
BmiI GGNNCC 7 cut(s) 236, 348, 552, 587, 629, 1065, 1783
BmrFI CCNGG 6 cut(s) 146, 213, 303, 591, 1061, 1787
BmsI GCATC 2 cut(s) 1473, 1618
BpiI GAAGAC 1 cut(s) 1297
Bpu10I CCTNAGC 1 cut(s) 1025
Bpu14I TTCGAA 1 cut(s) 944
BpuMI CCSGG 4 cut(s) 213, 591, 1061, 1787
BsaAI YACGTR 1 cut(s) 1776
BsaJI CCNNGG 4 cut(s) 301, 589, 1558, 1785
BsaWI WCCGGW 2 cut(s) 231, 349
Bsc4I CCNNNNNNNGG 7 cut(s) 15, 139, 291, 595, 914, 969, 1791
Bse118I RCCGGY 1 cut(s) 349
Bse3DI GCAATG 2 cut(s) 1067, 1203
BseBI CCWGG 2 cut(s) 146, 303
BseDI CCNNGG 4 cut(s) 301, 589, 1558, 1785
BseGI GGATG 5 cut(s) 222, 390, 811, 1048, 1118
BseLI CCNNNNNNNGG 7 cut(s) 15, 139, 291, 595, 914, 969, 1791
BseMI GCAATG 2 cut(s) 1067, 1203
BseMII CTCAG 1 cut(s) 1016
BseSI GKGCMC 2 cut(s) 555, 590
BseXI GCAGC 4 cut(s) 246, 708, 1408, 1677
BseYI CCCAGC 3 cut(s) 62, 73, 1662
BsgI GTGCAG 1 cut(s) 20
Bsh1236I CGCG 3 cut(s) 16, 186, 977
BshFI GGCC 3 cut(s) 703, 1557, 1723
BshNI GGYRCC 3 cut(s) 234, 550, 585
BshTI ACCGGT 1 cut(s) 349
BsiHKCI CYCGRG 3 cut(s) 103, 392, 632
BsiSI CCGG 6 cut(s) 212, 232, 350, 591, 1060, 1787
BslI CCNNNNNNNGG 7 cut(s) 15, 139, 291, 595, 914, 969, 1791
BsmAI GTCTC 1 cut(s) 1117
BsmBI CGTCTC 1 cut(s) 1117
BsmI GAATGC 3 cut(s) 950, 952, 964
BsnI GGCC 3 cut(s) 703, 1557, 1723
BsoBI CYCGRG 3 cut(s) 103, 392, 632
Bsp119I TTCGAA 1 cut(s) 944
Bsp1286I GDGCHC 2 cut(s) 555, 590
Bsp143I GATC 5 cut(s) 820, 1045, 1063, 1430, 1573
Bsp19I CCATGG 1 cut(s) 1558
BspANI GGCC 3 cut(s) 703, 1557, 1723
BspCNI CTCAG 1 cut(s) 1017
BspFNI CGCG 3 cut(s) 16, 186, 977
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 7 cut(s) 236, 348, 552, 587, 629, 1065, 1783
BspMAI CTGCAG 1 cut(s) 1636
BspMI ACCTGC 3 cut(s) 1386, 1639, 1710
BspPI GGATC 3 cut(s) 828, 1058, 1071
BspQI GCTCTTC 1 cut(s) 1539
BspT104I TTCGAA 1 cut(s) 944
BspT107I GGYRCC 3 cut(s) 234, 550, 585
BsrBI CCGCTC 1 cut(s) 229
BsrDI GCAATG 2 cut(s) 1067, 1203
BsrFI RCCGGY 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 4 cut(s) 301, 589, 1558, 1785
BssMI GATC 5 cut(s) 820, 1045, 1063, 1430, 1573
BssT1I CCWWGG 1 cut(s) 1558
Bst2UI CCWGG 2 cut(s) 146, 303
Bst4CI ACNGT 4 cut(s) 853, 1183, 1437, 1765
Bst6I CTCTTC 6 cut(s) 31, 503, 663, 839, 1146, 1539
BstAPI GCANNNNNTGC 1 cut(s) 1615
BstBAI YACGTR 1 cut(s) 1776
BstBI TTCGAA 1 cut(s) 944
BstC8I GCNNGC 5 cut(s) 184, 975, 1459, 1695, 1725
BstDEI CTNAG 2 cut(s) 290, 1025
BstDSI CCRYGG 1 cut(s) 1558
BstENI CCTNNNNNAGG 2 cut(s) 289, 967
BstF5I GGATG 5 cut(s) 222, 390, 811, 1048, 1118
BstFNI CGCG 3 cut(s) 16, 186, 977
BstHHI GCGC 3 cut(s) 126, 182, 1396
BstKTI GATC 5 cut(s) 823, 1048, 1066, 1433, 1576
BstMAI GTCTC 1 cut(s) 1117
BstMBI GATC 5 cut(s) 820, 1045, 1063, 1430, 1573
BstMWI GCNNNNNNNGC 4 cut(s) 172, 256, 1454, 1615
BstNI CCWGG 2 cut(s) 146, 303
BstNSI RCATGY 1 cut(s) 1592
BstSCI CCNGG 6 cut(s) 144, 211, 301, 589, 1059, 1785
BstSFI CTRYAG 3 cut(s) 715, 1426, 1632
BstSLI GKGCMC 2 cut(s) 555, 590
BstUI CGCG 3 cut(s) 16, 186, 977
BstV1I GCAGC 4 cut(s) 246, 708, 1408, 1677
BstV2I GAAGAC 1 cut(s) 1297
BstX2I RGATCY 1 cut(s) 1063
BstXI CCANNNNNNTGG 1 cut(s) 1320
BstYI RGATCY 1 cut(s) 1063
BsuI GTATCC 2 cut(s) 570, 570
BsuRI GGCC 3 cut(s) 703, 1557, 1723
BtgI CCRYGG 1 cut(s) 1558
BtrI CACGTC 1 cut(s) 1205
BtsCI GGATG 5 cut(s) 222, 390, 811, 1048, 1118
BtsI GCAGTG 1 cut(s) 1227
BtsIMutI CAGTG 2 cut(s) 654, 1227
BveI ACCTGC 3 cut(s) 1386, 1639, 1710
Cac8I GCNNGC 5 cut(s) 184, 975, 1459, 1695, 1725
CaiI CAGNNNCTG 2 cut(s) 139, 1346
CciI TCATGA 1 cut(s) 865
CfoI GCGC 3 cut(s) 126, 182, 1396
Cfr10I RCCGGY 1 cut(s) 349
Cfr13I GGNCC 3 cut(s) 130, 142, 199
CseI GACGC 1 cut(s) 175
Csp6I GTAC 3 cut(s) 235, 1036, 1735
CspAI ACCGGT 1 cut(s) 349
CviAII CATG 9 cut(s) 503, 866, 1553, 1559, 1571, 1589, 1613, 1619, 1730
CviQI GTAC 3 cut(s) 235, 1036, 1735
DdeI CTNAG 2 cut(s) 290, 1025
DpnI GATC 5 cut(s) 822, 1047, 1065, 1432, 1575
DpnII GATC 5 cut(s) 820, 1045, 1063, 1430, 1573
EaeI YGGCCR 1 cut(s) 1555
Eam1104I CTCTTC 6 cut(s) 31, 503, 663, 839, 1146, 1539
EarI CTCTTC 6 cut(s) 31, 503, 663, 839, 1146, 1539
EciI GGCGGA 1 cut(s) 1406
Eco130I CCWWGG 1 cut(s) 1558
Eco147I AGGCCT 1 cut(s) 1723
Eco47I GGWCC 3 cut(s) 130, 142, 199
Eco57I CTGAAG 1 cut(s) 1368
Eco72I CACGTG 1 cut(s) 1776
Eco88I CYCGRG 3 cut(s) 103, 392, 632
EcoNI CCTNNNNNAGG 2 cut(s) 289, 967
EcoRI GAATTC 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 144, 301
EcoT14I CCWWGG 1 cut(s) 1558
EcoT22I ATGCAT 1 cut(s) 952
ErhI CCWWGG 1 cut(s) 1558
Esp3I CGTCTC 1 cut(s) 1117
FaeI CATG 9 cut(s) 506, 869, 1556, 1562, 1574, 1592, 1616, 1622, 1733
FatI CATG 9 cut(s) 502, 865, 1552, 1558, 1570, 1588, 1612, 1618, 1729
FauI CCCGC 4 cut(s) 50, 191, 234, 970
FbaI TGATCA 2 cut(s) 1045, 1573
Fnu4HI GCNGC 5 cut(s) 260, 263, 722, 1397, 1691
FokI GGATG 5 cut(s) 209, 397, 818, 1055, 1125
Fsp4HI GCNGC 5 cut(s) 260, 263, 722, 1397, 1691
FspBI CTAG 1 cut(s) 1073
GlaI GCGC 3 cut(s) 125, 181, 1395
GluI GCNGC 5 cut(s) 260, 263, 722, 1397, 1691
GsaI CCCAGC 3 cut(s) 66, 77, 1666
HaeIII GGCC 3 cut(s) 703, 1557, 1723
HapII CCGG 6 cut(s) 212, 232, 350, 591, 1060, 1787
HgaI GACGC 1 cut(s) 175
HhaI GCGC 3 cut(s) 126, 182, 1396
Hin1II CATG 9 cut(s) 506, 869, 1556, 1562, 1574, 1592, 1616, 1622, 1733
Hin6I GCGC 3 cut(s) 124, 180, 1394
HinP1I GCGC 3 cut(s) 124, 180, 1394
HincII GTYRAC 1 cut(s) 1659
HindII GTYRAC 1 cut(s) 1659
HindIII AAGCTT 1 cut(s) 825
HinfI GANTC 6 cut(s) 674, 691, 898, 1302, 1325, 1622
HpaI GTTAAC 1 cut(s) 1659
HpaII CCGG 6 cut(s) 212, 232, 350, 591, 1060, 1787
HphI GGTGA 2 cut(s) 1278, 1691
Hpy166II GTNNAC 5 cut(s) 202, 319, 1333, 1659, 1735
Hpy188I TCNGA 7 cut(s) 346, 528, 576, 1209, 1342, 1482, 1751
Hpy188III TCNNGA 9 cut(s) 103, 280, 392, 611, 729, 739, 866, 955, 1792
Hpy8I GTNNAC 5 cut(s) 202, 319, 1333, 1659, 1735
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 5 cut(s) 739, 973, 994, 1156, 1527
HpyCH4III ACNGT 4 cut(s) 853, 1183, 1437, 1765
HpyCH4IV ACGT 2 cut(s) 1204, 1775
HpyCH4V TGCA 8 cut(s) 37, 950, 1094, 1144, 1281, 1618, 1634, 1761
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 256, 1454, 1615
HpyF3I CTNAG 2 cut(s) 290, 1025
HpySE526I ACGT 2 cut(s) 1204, 1775
Hsp92II CATG 9 cut(s) 506, 869, 1556, 1562, 1574, 1592, 1616, 1622, 1733
HspAI GCGC 3 cut(s) 124, 180, 1394
KpnI GGTACC 1 cut(s) 238
Ksp22I TGATCA 2 cut(s) 1045, 1573
KspAI GTTAAC 1 cut(s) 1659
Kzo9I GATC 5 cut(s) 820, 1045, 1063, 1430, 1573
LguI GCTCTTC 1 cut(s) 1539
LmnI GCTCC 2 cut(s) 234, 1241
Lsp1109I GCAGC 4 cut(s) 246, 708, 1408, 1677
LweI GCATC 2 cut(s) 1473, 1618
MaeI CTAG 1 cut(s) 1073
MaeII ACGT 2 cut(s) 1204, 1775
MaeIII GTNAC 2 cut(s) 926, 1765
MalI GATC 5 cut(s) 822, 1047, 1065, 1432, 1575
MbiI CCGCTC 1 cut(s) 229
MboI GATC 5 cut(s) 820, 1045, 1063, 1430, 1573
MflI RGATCY 1 cut(s) 1063
MhlI GDGCHC 2 cut(s) 555, 590
MlsI TGGCCA 1 cut(s) 1557
MluNI TGGCCA 1 cut(s) 1557
MlyI GAGTC 2 cut(s) 683, 1311
MmeI TCCRAC 1 cut(s) 835
Mox20I TGGCCA 1 cut(s) 1557
Mph1103I ATGCAT 1 cut(s) 952
MroXI GAANNNNTTC 4 cut(s) 351, 533, 950, 962
MscI TGGCCA 1 cut(s) 1557
MseI TTAA 7 cut(s) 333, 380, 414, 711, 891, 1011, 1658
MslI CAYNNNNRTG 4 cut(s) 1557, 1569, 1587, 1617
Msp20I TGGCCA 1 cut(s) 1557
MspA1I CMGCKG 1 cut(s) 1666
MspI CCGG 6 cut(s) 212, 232, 350, 591, 1060, 1787
MspR9I CCNGG 6 cut(s) 146, 213, 303, 591, 1061, 1787
Mva1269I GAATGC 3 cut(s) 950, 952, 964
MvaI CCWGG 2 cut(s) 146, 303
MvnI CGCG 3 cut(s) 16, 186, 977
MwoI GCNNNNNNNGC 4 cut(s) 172, 256, 1454, 1615
NciI CCSGG 4 cut(s) 213, 591, 1061, 1787
NcoI CCATGG 1 cut(s) 1558
NdeII GATC 5 cut(s) 820, 1045, 1063, 1430, 1573
NlaIII CATG 9 cut(s) 506, 869, 1556, 1562, 1574, 1592, 1616, 1622, 1733
NlaIV GGNNCC 7 cut(s) 236, 348, 552, 587, 629, 1065, 1783
NmuCI GTSAC 1 cut(s) 926
NsiI ATGCAT 1 cut(s) 952
NspI RCATGY 1 cut(s) 1592
NspV TTCGAA 1 cut(s) 944
PaeR7I CTCGAG 2 cut(s) 103, 392
PagI TCATGA 1 cut(s) 865
PaqCI CACCTGC 1 cut(s) 1710
PceI AGGCCT 1 cut(s) 1723
PciI ACATGT 1 cut(s) 1588
PciSI GCTCTTC 1 cut(s) 1539
PctI GAATGC 3 cut(s) 950, 952, 964
PdmI GAANNNNTTC 4 cut(s) 351, 533, 950, 962
PfeI GAWTC 4 cut(s) 691, 898, 1325, 1622
PflMI CCANNNNNTGG 1 cut(s) 139
PinAI ACCGGT 1 cut(s) 349
PkrI GCNGC 5 cut(s) 261, 264, 723, 1398, 1692
PleI GAGTC 2 cut(s) 682, 1310
PmaCI CACGTG 1 cut(s) 1776
PmlI CACGTG 1 cut(s) 1776
PpsI GAGTC 2 cut(s) 682, 1310
Ppu21I YACGTR 1 cut(s) 1776
PscI ACATGT 1 cut(s) 1588
Psp6I CCWGG 2 cut(s) 144, 301
PspCI CACGTG 1 cut(s) 1776
PspFI CCCAGC 3 cut(s) 62, 73, 1662
PspGI CCWGG 2 cut(s) 144, 301
PspN4I GGNNCC 7 cut(s) 236, 348, 552, 587, 629, 1065, 1783
PspPI GGNCC 3 cut(s) 130, 142, 199
PstI CTGCAG 1 cut(s) 1636
PstNI CAGNNNCTG 2 cut(s) 139, 1346
PsuI RGATCY 1 cut(s) 1063
PvuII CAGCTG 1 cut(s) 1666
RsaI GTAC 3 cut(s) 236, 1037, 1736
RsaNI GTAC 3 cut(s) 235, 1036, 1735
RseI CAYNNNNRTG 4 cut(s) 1557, 1569, 1587, 1617
SapI GCTCTTC 1 cut(s) 1539
SaqAI TTAA 7 cut(s) 333, 380, 414, 711, 891, 1011, 1658
SatI GCNGC 5 cut(s) 260, 263, 722, 1397, 1691
Sau3AI GATC 5 cut(s) 820, 1045, 1063, 1430, 1573
Sau96I GGNCC 3 cut(s) 130, 142, 199
SchI GAGTC 2 cut(s) 683, 1311
ScrFI CCNGG 6 cut(s) 146, 213, 303, 591, 1061, 1787
SduI GDGCHC 2 cut(s) 555, 590
SfaNI GCATC 2 cut(s) 1473, 1618
SfcI CTRYAG 3 cut(s) 715, 1426, 1632
Sfr274I CTCGAG 2 cut(s) 103, 392
SfuI TTCGAA 1 cut(s) 944
SinI GGWCC 3 cut(s) 130, 142, 199
SlaI CTCGAG 2 cut(s) 103, 392
SmiMI CAYNNNNRTG 4 cut(s) 1557, 1569, 1587, 1617
SmlI CTYRAG 2 cut(s) 103, 392
SmoI CTYRAG 2 cut(s) 103, 392
SseBI AGGCCT 1 cut(s) 1723
SspMI CTAG 1 cut(s) 1073
StuI AGGCCT 1 cut(s) 1723
StyD4I CCNGG 6 cut(s) 144, 211, 301, 589, 1059, 1785
StyI CCWWGG 1 cut(s) 1558
TaaI ACNGT 4 cut(s) 853, 1183, 1437, 1765
TaiI ACGT 2 cut(s) 1207, 1778
TatI WGTACW 1 cut(s) 1734
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 4 cut(s) 691, 898, 1325, 1622
Tru1I TTAA 7 cut(s) 333, 380, 414, 711, 891, 1011, 1658
Tru9I TTAA 7 cut(s) 333, 380, 414, 711, 891, 1011, 1658
TscAI CASTG 2 cut(s) 654, 1227
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 4 cut(s) 259, 721, 1396, 1690
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 3 cut(s) 491, 854, 1332
TspGWI ACGGA 2 cut(s) 786, 1581
TspRI CASTG 2 cut(s) 654, 1227
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 3 cut(s) 130, 142, 199
XagI CCTNNNNNAGG 2 cut(s) 289, 967
XapI RAATTY 3 cut(s) 515, 679, 920
XceI RCATGY 1 cut(s) 1592
XhoI CTCGAG 2 cut(s) 103, 392
XmnI GAANNNNTTC 4 cut(s) 351, 533, 950, 962
XspI CTAG 1 cut(s) 1073
Zsp2I ATGCAT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.