Prupe.8G243800_v2.0.a1

Protein ROOT PRIMORDIUM DEFECTIVE 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014611
Physical Location & Seq
Reverse (-)
21255468 .. 21257964
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G243800.1

Sequence Viewer

Length: 1200 bp
ATGCTCCCCAAGACCCGAACTATTTCTTCCTATTTGCACAACCACACAACCATTTTCACGTCACACACGAACCCAGAAACGCACCTTCAGGTTCGATTCATTTCGAGCCTCAAGGTGGTTTGGCGCAAAGACCGGAAGCTAGACCAGGCCATTAAGAACGACAAACAGTACAAGCTCTGTGCCCGGGTCGTCAAGGAGGTCCTTAACGAACCGGGCAAGGCAATACCACTTCGGTACCTTGAAAAACGGCGCGAAAGATTGCGCCTTAACATCAAAGTCAAAACCTTTCTTAGCAGAAACCCTGGTTTATTTGATATTTATTATGATAGAATCAAACCCAAAACGGAACCCGTTAAGTTTCTTCGAATTAGCGATAGGCTCCAGCAAATTCTTGAAGAAGGGAATGGGATTGTTATGGAAAATGAGCCTCTGATTGTGTCTAAGTTGTGTAAATTGTTGATGATGTCCAAGGATAAAGTGCTTAGTGCTGATAAATTGGTTCATGTCAAGAGGGAATTTGGGTTCCCTAATGATTTTATGGTCAATTTGGTGCCCAAATATCCGCAGTATTTTAGGATACTTGGGTTCCCTGGGGAGGAGAAATCATTTCTGGAATTGGTTTCTTGGAACCCCGAGTTTGCGAAATCTGTGATTGAGAGGAGAGCAGAAGAGGAGTCAAATTTGACAGGAATCCGAGTTCGTCCTAATTTTTATTATAAGCTTCCATCAGGGTTTTTCTTGAAGAGGGAAATGAGGGAGTGGGTTAGGGATTGGATGGAGCTGGATTACATATCCCCATACAAGGATGTGTCGCAATTGGATCAAGCATCTCAGGAAATGGAGAAGAGGACGGTTGGGGTTTTCCATGAGCTGTTATCATTGTCCATATTTAAGAGGATTCCTGTGCCCATATTGGGGAAATTTAGTGATGAGTATAGGTTTTCAAATGCATTCTCGAATGTATTCACAAGGCATTCGGGGATATTCTATCTGTCATTGAAGGGAGGGATTAAGACAGCGGTGCTCAGGGAAGCGTACAAGGATGATAAAATGATTGACTGTGATCCGCTGCTAGAGATAAAGGACAAGTTTGTTGAGCTATTGGAGGAGGGATGGAGGGAGAGAAAAGAACAGTTGCAGTTGCAAATGGAAGAGGTTAAGAAGGACAAGGAAAGGATGGCCATGGGGAATAAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

400

Amino Acids

47.29

Weight (kDa)

9.43

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014611)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63090
fragaria_vesca FvH4_2g23842
malus_domestica MD03G1268200.v1.1 MD11G1289000.v1.1
prunus_persica Prupe.8G243800_v2.0.a1
pyrus_communis pycom03g21410 pycom11g25640
rosa_chinensis RchiOBHm_Chr6g0291451
rosa_laevigata RLG00000012113
rosa_multiflora Rmu_sc0003296.1_g000003
rosa_roxburghii Rroxscaffold_7G00176040
rosa_rugosa Rorug06G0219500
rosa_samantha Rh6AG331800 Rh6BG338700 Rh6CG344900 Rh6DG332000
rosa_wichuraiana Rw6G028800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 717
Acc65I GGTACC 1 cut(s) 234
AccB1I GGYRCC 2 cut(s) 234, 550
AccII CGCG 1 cut(s) 252
AciI CCGC 3 cut(s) 563, 1019, 1067
AclWI GGATC 2 cut(s) 828, 1058
AcoI YGGCCR 1 cut(s) 1179
AcsI RAATTY 4 cut(s) 387, 515, 679, 920
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 3 cut(s) 170, 236, 1037
AfiI CCNNNNNNNGG 5 cut(s) 115, 595, 802, 914, 915
AgsI TTSAA 5 cut(s) 242, 395, 742, 945, 1000
AjiI CACGTC 1 cut(s) 60
AjnI CCWGG 3 cut(s) 144, 301, 589
AloI GAACNNNNNNTCC 4 cut(s) 506, 538, 681, 713
AluBI AGCT 6 cut(s) 139, 175, 721, 781, 871, 1099
AluI AGCT 6 cut(s) 139, 175, 721, 781, 871, 1099
Alw21I GWGCWC 1 cut(s) 1026
AlwI GGATC 2 cut(s) 828, 1058
Ama87I CYCGRG 2 cut(s) 183, 632
AoxI GGCC 2 cut(s) 147, 1179
ApeKI GCWGC 1 cut(s) 1069
ApoI RAATTY 4 cut(s) 387, 515, 679, 920
Asp700I GAANNNNTTC 2 cut(s) 22, 962
Asp718I GGTACC 1 cut(s) 234
AspLEI GCGC 3 cut(s) 126, 252, 264
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 3 cut(s) 184, 185, 213
AsuII TTCGAA 1 cut(s) 364
AvaI CYCGRG 2 cut(s) 183, 632
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 3 cut(s) 184, 555, 909
BaeI ACNNNNGTAYC 4 cut(s) 218, 251, 569, 602
BalI TGGCCA 1 cut(s) 1181
BanI GGYRCC 2 cut(s) 234, 550
Bbv12I GWGCWC 1 cut(s) 1026
BbvI GCAGC 1 cut(s) 1056
BccI CCATC 4 cut(s) 733, 769, 1107, 1171
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 3 cut(s) 146, 303, 591
BciVI GTATCC 1 cut(s) 570
BcnI CCSGG 3 cut(s) 184, 185, 213
BfaI CTAG 2 cut(s) 140, 1073
BfuI GTATCC 1 cut(s) 570
BisI GCNGC 1 cut(s) 1070
BlsI GCNGC 1 cut(s) 1071
Bme1390I CCNGG 6 cut(s) 146, 184, 185, 213, 303, 591
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 2 cut(s) 183, 632
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 7 cut(s) 236, 348, 380, 524, 552, 587, 629
BmrFI CCNGG 6 cut(s) 146, 184, 185, 213, 303, 591
BmsI GCATC 1 cut(s) 836
BpmI CTGGAG 1 cut(s) 365
Bpu10I CCTNAGC 1 cut(s) 1025
Bpu14I TTCGAA 1 cut(s) 364
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 3 cut(s) 184, 185, 213
BsaJI CCNNGG 6 cut(s) 183, 301, 468, 589, 590, 1182
BsaWI WCCGGW 1 cut(s) 132
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 595, 802, 914, 915
BseBI CCWGG 3 cut(s) 146, 303, 591
BseDI CCNNGG 6 cut(s) 183, 301, 468, 589, 590, 1182
BseGI GGATG 5 cut(s) 780, 811, 1048, 1118, 1182
BseLI CCNNNNNNNGG 5 cut(s) 115, 595, 802, 914, 915
BseMII CTCAG 2 cut(s) 845, 1039
BseRI GAGGAG 4 cut(s) 611, 673, 686, 1121
BseSI GKGCMC 3 cut(s) 184, 555, 909
BseXI GCAGC 1 cut(s) 1056
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 2 cut(s) 149, 1181
BshNI GGYRCC 2 cut(s) 234, 550
BsiHKAI GWGCWC 1 cut(s) 1026
BsiHKCI CYCGRG 2 cut(s) 183, 632
BsiSI CCGG 3 cut(s) 133, 184, 212
BslI CCNNNNNNNGG 5 cut(s) 115, 595, 802, 914, 915
BsmI GAATGC 2 cut(s) 950, 973
BsnI GGCC 2 cut(s) 149, 1181
BsoBI CYCGRG 2 cut(s) 183, 632
Bsp119I TTCGAA 1 cut(s) 364
Bsp1286I GDGCHC 4 cut(s) 184, 555, 909, 1026
Bsp143I GATC 2 cut(s) 820, 1063
Bsp19I CCATGG 1 cut(s) 1182
BspACI CCGC 3 cut(s) 563, 1019, 1067
BspANI GGCC 2 cut(s) 149, 1181
BspCNI CTCAG 2 cut(s) 844, 1038
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 7 cut(s) 236, 348, 380, 524, 552, 587, 629
BspPI GGATC 2 cut(s) 828, 1058
BspT104I TTCGAA 1 cut(s) 364
BspT107I GGYRCC 2 cut(s) 234, 550
BssECI CCNNGG 6 cut(s) 183, 301, 468, 589, 590, 1182
BssMI GATC 2 cut(s) 820, 1063
BssT1I CCWWGG 2 cut(s) 468, 1182
Bst2UI CCWGG 3 cut(s) 146, 303, 591
Bst4CI ACNGT 4 cut(s) 168, 853, 1061, 1134
Bst6I CTCTTC 4 cut(s) 663, 737, 839, 1146
BstBI TTCGAA 1 cut(s) 364
BstDEI CTNAG 5 cut(s) 290, 441, 482, 831, 1025
BstDSI CCRYGG 1 cut(s) 1182
BstF5I GGATG 5 cut(s) 780, 811, 1048, 1118, 1182
BstFNI CGCG 1 cut(s) 252
BstHHI GCGC 3 cut(s) 126, 252, 264
BstKTI GATC 2 cut(s) 823, 1066
BstMBI GATC 2 cut(s) 820, 1063
BstNI CCWGG 3 cut(s) 146, 303, 591
BstSCI CCNGG 6 cut(s) 144, 182, 183, 211, 301, 589
BstSLI GKGCMC 3 cut(s) 184, 555, 909
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 1056
BsuI GTATCC 1 cut(s) 570
BsuRI GGCC 2 cut(s) 149, 1181
BtgI CCRYGG 1 cut(s) 1182
BtrI CACGTC 1 cut(s) 60
BtsCI GGATG 5 cut(s) 780, 811, 1048, 1118, 1182
CfoI GCGC 3 cut(s) 126, 252, 264
Cfr13I GGNCC 1 cut(s) 199
Cfr9I CCCGGG 1 cut(s) 183
Csp6I GTAC 3 cut(s) 169, 235, 1036
CviAII CATG 3 cut(s) 503, 866, 1183
CviQI GTAC 3 cut(s) 169, 235, 1036
DdeI CTNAG 5 cut(s) 290, 441, 482, 831, 1025
DpnI GATC 2 cut(s) 822, 1065
DpnII GATC 2 cut(s) 820, 1063
EaeI YGGCCR 1 cut(s) 1179
Eam1104I CTCTTC 4 cut(s) 663, 737, 839, 1146
EarI CTCTTC 4 cut(s) 663, 737, 839, 1146
Eco130I CCWWGG 2 cut(s) 468, 1182
Eco47I GGWCC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 71
Eco88I CYCGRG 2 cut(s) 183, 632
EcoO109I RGGNCCY 1 cut(s) 199
EcoRII CCWGG 3 cut(s) 144, 301, 589
EcoT14I CCWWGG 2 cut(s) 468, 1182
EcoT22I ATGCAT 1 cut(s) 952
ErhI CCWWGG 2 cut(s) 468, 1182
FaeI CATG 3 cut(s) 506, 869, 1186
FatI CATG 3 cut(s) 502, 865, 1182
Fnu4HI GCNGC 1 cut(s) 1070
FokI GGATG 5 cut(s) 787, 818, 1055, 1125, 1189
Fsp4HI GCNGC 1 cut(s) 1070
FspBI CTAG 2 cut(s) 140, 1073
GlaI GCGC 3 cut(s) 125, 251, 263
GluI GCNGC 1 cut(s) 1070
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 2 cut(s) 149, 1181
HapII CCGG 3 cut(s) 133, 184, 212
HhaI GCGC 3 cut(s) 126, 252, 264
Hin1II CATG 3 cut(s) 506, 869, 1186
Hin6I GCGC 3 cut(s) 124, 250, 262
HinP1I GCGC 3 cut(s) 124, 250, 262
HindIII AAGCTT 1 cut(s) 719
HinfI GANTC 5 cut(s) 96, 330, 674, 690, 898
HpaII CCGG 3 cut(s) 133, 184, 212
Hpy188I TCNGA 2 cut(s) 432, 695
Hpy188III TCNNGA 6 cut(s) 392, 508, 611, 739, 833, 955
HpyAV CCTTC 4 cut(s) 95, 392, 994, 1156
HpyCH4III ACNGT 4 cut(s) 168, 853, 1061, 1134
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 37, 950, 1138, 1144
HpyF3I CTNAG 5 cut(s) 290, 441, 482, 831, 1025
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 3 cut(s) 506, 869, 1186
HspAI GCGC 3 cut(s) 124, 250, 262
KpnI GGTACC 1 cut(s) 238
Kzo9I GATC 2 cut(s) 820, 1063
LmnI GCTCC 3 cut(s) 9, 384, 778
Lsp1109I GCAGC 1 cut(s) 1056
LweI GCATC 1 cut(s) 836
MaeI CTAG 2 cut(s) 140, 1073
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 60
MalI GATC 2 cut(s) 822, 1065
MboI GATC 2 cut(s) 820, 1063
MboII GAAGA 7 cut(s) 18, 353, 407, 680, 754, 856, 1163
MfeI CAATTG 1 cut(s) 815
MhlI GDGCHC 4 cut(s) 184, 555, 909, 1026
MlsI TGGCCA 1 cut(s) 1181
MluNI TGGCCA 1 cut(s) 1181
MlyI GAGTC 1 cut(s) 683
Mox20I TGGCCA 1 cut(s) 1181
Mph1103I ATGCAT 1 cut(s) 952
MroXI GAANNNNTTC 2 cut(s) 22, 962
MscI TGGCCA 1 cut(s) 1181
MseI TTAA 7 cut(s) 153, 204, 267, 354, 891, 1011, 1158
Msp20I TGGCCA 1 cut(s) 1181
MspA1I CMGCKG 2 cut(s) 1019, 1069
MspI CCGG 3 cut(s) 133, 184, 212
MspR9I CCNGG 6 cut(s) 146, 184, 185, 213, 303, 591
MunI CAATTG 1 cut(s) 815
Mva1269I GAATGC 2 cut(s) 950, 973
MvaI CCWGG 3 cut(s) 146, 303, 591
MvnI CGCG 1 cut(s) 252
NciI CCSGG 3 cut(s) 184, 185, 213
NcoI CCATGG 1 cut(s) 1182
NdeII GATC 2 cut(s) 820, 1063
NlaIII CATG 3 cut(s) 506, 869, 1186
NlaIV GGNNCC 7 cut(s) 236, 348, 380, 524, 552, 587, 629
NmuCI GTSAC 1 cut(s) 60
NsiI ATGCAT 1 cut(s) 952
NspV TTCGAA 1 cut(s) 364
PasI CCCWGGG 1 cut(s) 590
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PctI GAATGC 2 cut(s) 950, 973
PdmI GAANNNNTTC 2 cut(s) 22, 962
PfeI GAWTC 4 cut(s) 96, 330, 690, 898
PkrI GCNGC 1 cut(s) 1071
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
PpuMI RGGWCCY 1 cut(s) 199
PsiI TTATAA 1 cut(s) 717
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 3 cut(s) 144, 301, 589
PspGI CCWGG 3 cut(s) 144, 301, 589
PspN4I GGNNCC 7 cut(s) 236, 348, 380, 524, 552, 587, 629
PspPI GGNCC 1 cut(s) 199
PspPPI RGGWCCY 1 cut(s) 199
RsaI GTAC 3 cut(s) 170, 236, 1037
RsaNI GTAC 3 cut(s) 169, 235, 1036
SaqAI TTAA 7 cut(s) 153, 204, 267, 354, 891, 1011, 1158
SatI GCNGC 1 cut(s) 1070
Sau3AI GATC 2 cut(s) 820, 1063
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 1 cut(s) 683
ScrFI CCNGG 6 cut(s) 146, 184, 185, 213, 303, 591
SduI GDGCHC 4 cut(s) 184, 555, 909, 1026
SfaNI GCATC 1 cut(s) 836
SfuI TTCGAA 1 cut(s) 364
SinI GGWCC 1 cut(s) 199
SmaI CCCGGG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SsiI CCGC 3 cut(s) 563, 1019, 1067
SspMI CTAG 2 cut(s) 140, 1073
StyD4I CCNGG 6 cut(s) 144, 182, 183, 211, 301, 589
StyI CCWWGG 2 cut(s) 468, 1182
TaaI ACNGT 4 cut(s) 168, 853, 1061, 1134
TaiI ACGT 1 cut(s) 62
TaqI TCGA 4 cut(s) 94, 104, 364, 956
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 4 cut(s) 96, 330, 690, 898
Tru1I TTAA 7 cut(s) 153, 204, 267, 354, 891, 1011, 1158
Tru9I TTAA 7 cut(s) 153, 204, 267, 354, 891, 1011, 1158
TseFI GTSAC 1 cut(s) 60
TseI GCWGC 1 cut(s) 1069
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 2 cut(s) 88, 491
TspGWI ACGGA 1 cut(s) 359
TspMI CCCGGG 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 4 cut(s) 387, 515, 679, 920
XmaI CCCGGG 1 cut(s) 183
XmnI GAANNNNTTC 2 cut(s) 22, 962
XspI CTAG 2 cut(s) 140, 1073
Zsp2I ATGCAT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.