pycom11g25640

Protein ROOT PRIMORDIUM DEFECTIVE 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014611
Physical Location & Seq
Reverse (-)
28393117 .. 28395302
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g25640.2

Sequence Viewer

Length: 1191 bp
ATGCTCTCCAAAACCCGAACACTCTGTTCCTATCTGCACACCCGCAAACCCACTCTCACACCCAGCACCCACCCAGCAACCTACCTCCAACCGCGATCAATCTCGAGCCTCAAAGTCGTATGGCGCAAGGACCGGAAGCTCGACCAGGCAATCGAAAACGACAAACCCTACAAGCTCTGCGCCCGCGTCGTCAAGGAGGTCCTCAACGAACCGGGTCGGGTAATCCCGCTCCGGTACCTCGAAAAACGGCGCGAGAGGCTGCGGCTCAACATCAAAGTCAAGACCTTTCTTAGCAGAAACCCAGGTTTGTTCGATGTTTACTATGATAGGATTAAACCCAAATCGGAACCGGTTCAGTTTCTTCGATTTAGCGATAGGTTAAGGATGTTTCTCGAGGAGGAGGAGAGGATTTTTAAGGAAAATGAGCCGTTGATTGTGTCTAAATTGTGTAAATTGCTGATGATGTGTAAGGATAGGGTTGTTAGTGTTGATAAATTGGTTCATGTGAAGAGGGAATTCGGGTTTCCAAACGATTTCTTGGTTAGCTTGGTGCCCAGGTATCCGCAGTATTTTCGGATACTTGGGTGCCCCGGAGAGGAGAATTGTTATCTGGAATTGGTTTCATGGAACCCCGAGTTTGCGAAATCAGTGATTGAGAGGAGGGCAGAAGAGGAGTCGAATTTGACAGGGATTCGGGTTCGGCCTAATTTTAACTATAGGCTGCCATCAGGATTTTTCTTGAAGAAGGAAATGAGGGAGTGGGTTAGGGATTGGGTGGAAATGGATTACATTTCACCGTATGAGGATGTATCAAAATTGGATCAAGCTTCGCAGGAAATGGAGAAGAGGACGGTTGGAGTTTTTCATGAGTTGTTGTCATTGTCTTTATTTAAGAGGATTCCTGTGCCGATATTGGGGAAATTTAGTGATGAGTATAGATTTTCGAATGCATTCTCGAATGTGTTCACAAGGCACGCAGGGATATTCTATCTGTCGTTGAAGGGAGGGATTAAGACGGCGGTGCTGAGGGAAGCGTACAAGGATGATCAGTTGATTGACCGGGATCCATTGCTAGAGATAAAGGACAAGTTTGCAGAGCTATTGGAGGAGGGATGGAGGGAGAGACGAGAGCAGTTGCGGTTGCAAAGGGAAGAGGTTGAGAAGGACAAGGAAATGATGACAGGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

397

Amino Acids

47.15

Weight (kDa)

9.3

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014611)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63090
fragaria_vesca FvH4_2g23842
malus_domestica MD03G1268200.v1.1 MD11G1289000.v1.1
prunus_persica Prupe.8G243800_v2.0.a1
pyrus_communis pycom03g21410 pycom11g25640
rosa_chinensis RchiOBHm_Chr6g0291451
rosa_laevigata RLG00000012113
rosa_multiflora Rmu_sc0003296.1_g000003
rosa_roxburghii Rroxscaffold_7G00176040
rosa_rugosa Rorug06G0219500
rosa_samantha Rh6AG331800 Rh6BG338700 Rh6CG344900 Rh6DG332000
rosa_wichuraiana Rw6G028800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 234
AccB1I GGYRCC 3 cut(s) 234, 550, 585
AccBSI CCGCTC 1 cut(s) 229
AccII CGCG 3 cut(s) 94, 186, 252
AciI CCGC 8 cut(s) 43, 92, 184, 227, 262, 563, 1019, 1138
AclWI GGATC 3 cut(s) 828, 1058, 1071
AcsI RAATTY 3 cut(s) 515, 679, 920
AfaI GTAC 2 cut(s) 236, 1037
AfiI CCNNNNNNNGG 2 cut(s) 595, 914
AgeI ACCGGT 1 cut(s) 349
AgsI TTSAA 2 cut(s) 742, 1000
AjnI CCWGG 3 cut(s) 144, 301, 554
AluBI AGCT 5 cut(s) 139, 175, 546, 827, 1099
AluI AGCT 5 cut(s) 139, 175, 546, 827, 1099
Alw26I GTCTC 1 cut(s) 1117
AlwI GGATC 3 cut(s) 828, 1058, 1071
Ama87I CYCGRG 3 cut(s) 103, 392, 632
AoxI GGCC 1 cut(s) 701
ApeKI GCWGC 2 cut(s) 259, 721
ApoI RAATTY 3 cut(s) 515, 679, 920
AsiGI ACCGGT 1 cut(s) 349
Asp700I GAANNNNTTC 3 cut(s) 351, 950, 962
Asp718I GGTACC 1 cut(s) 234
AspLEI GCGC 3 cut(s) 126, 182, 252
AspS9I GGNCC 2 cut(s) 130, 199
AsuC2I CCSGG 3 cut(s) 213, 591, 1061
AsuHPI GGTGA 1 cut(s) 786
AsuII TTCGAA 1 cut(s) 944
AvaI CYCGRG 3 cut(s) 103, 392, 632
AvaII GGWCC 2 cut(s) 130, 199
BaeGI GKGCMC 2 cut(s) 555, 590
BaeI ACNNNNGTAYC 2 cut(s) 569, 602
BamHI GGATCC 1 cut(s) 1063
BanI GGYRCC 3 cut(s) 234, 550, 585
BbvCI CCTCAGC 1 cut(s) 1025
BbvI GCAGC 2 cut(s) 246, 708
BccI CCATC 2 cut(s) 733, 1107
BceAI ACGGC 3 cut(s) 263, 412, 1032
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BciT130I CCWGG 3 cut(s) 146, 303, 556
BciVI GTATCC 2 cut(s) 570, 570
BclI TGATCA 1 cut(s) 1045
BcnI CCSGG 3 cut(s) 213, 591, 1061
BcoDI GTCTC 1 cut(s) 1117
BfaI CTAG 1 cut(s) 1073
BfmI CTRYAG 1 cut(s) 715
BfuI GTATCC 2 cut(s) 570, 570
BisI GCNGC 3 cut(s) 260, 263, 722
BlsI GCNGC 3 cut(s) 261, 264, 723
Bme1390I CCNGG 6 cut(s) 146, 213, 303, 556, 591, 1061
Bme18I GGWCC 2 cut(s) 130, 199
BmeT110I CYCGRG 3 cut(s) 103, 392, 632
BmgT120I GGNCC 2 cut(s) 130, 199
BmiI GGNNCC 6 cut(s) 236, 348, 552, 587, 629, 1065
BmrFI CCNGG 6 cut(s) 146, 213, 303, 556, 591, 1061
Bpu10I CCTNAGC 1 cut(s) 1025
Bpu14I TTCGAA 1 cut(s) 944
BpuMI CCSGG 3 cut(s) 213, 591, 1061
BsaJI CCNNGG 3 cut(s) 301, 554, 589
BsaWI WCCGGW 3 cut(s) 132, 231, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 595, 914
Bse118I RCCGGY 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 1067
BseBI CCWGG 3 cut(s) 146, 303, 556
BseDI CCNNGG 3 cut(s) 301, 554, 589
BseGI GGATG 4 cut(s) 390, 811, 1048, 1118
BseLI CCNNNNNNNGG 2 cut(s) 595, 914
BseMI GCAATG 1 cut(s) 1067
BseMII CTCAG 1 cut(s) 1016
BseRI GAGGAG 7 cut(s) 410, 413, 416, 611, 673, 686, 1121
BseSI GKGCMC 2 cut(s) 555, 590
BseXI GCAGC 2 cut(s) 246, 708
BseYI CCCAGC 2 cut(s) 62, 73
BsgI GTGCAG 1 cut(s) 20
Bsh1236I CGCG 3 cut(s) 94, 186, 252
BshFI GGCC 1 cut(s) 703
BshNI GGYRCC 3 cut(s) 234, 550, 585
BshTI ACCGGT 1 cut(s) 349
BsiHKCI CYCGRG 3 cut(s) 103, 392, 632
BsiSI CCGG 6 cut(s) 133, 212, 232, 350, 591, 1060
BslI CCNNNNNNNGG 2 cut(s) 595, 914
BsmAI GTCTC 1 cut(s) 1117
BsmBI CGTCTC 1 cut(s) 1117
BsmI GAATGC 2 cut(s) 950, 952
BsnI GGCC 1 cut(s) 703
BsoBI CYCGRG 3 cut(s) 103, 392, 632
Bsp119I TTCGAA 1 cut(s) 944
Bsp1286I GDGCHC 2 cut(s) 555, 590
Bsp143I GATC 4 cut(s) 95, 820, 1045, 1063
BspACI CCGC 8 cut(s) 43, 92, 184, 227, 262, 563, 1019, 1138
BspANI GGCC 1 cut(s) 703
BspCNI CTCAG 1 cut(s) 1017
BspFNI CGCG 3 cut(s) 94, 186, 252
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 6 cut(s) 236, 348, 552, 587, 629, 1065
BspPI GGATC 3 cut(s) 828, 1058, 1071
BspT104I TTCGAA 1 cut(s) 944
BspT107I GGYRCC 3 cut(s) 234, 550, 585
BsrBI CCGCTC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 1067
BsrFI RCCGGY 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 3 cut(s) 301, 554, 589
BssMI GATC 4 cut(s) 95, 820, 1045, 1063
Bst2UI CCWGG 3 cut(s) 146, 303, 556
Bst4CI ACNGT 2 cut(s) 798, 853
Bst6I CTCTTC 4 cut(s) 503, 663, 839, 1146
BstBI TTCGAA 1 cut(s) 944
BstC8I GCNNGC 2 cut(s) 184, 975
BstDEI CTNAG 2 cut(s) 290, 1025
BstF5I GGATG 4 cut(s) 390, 811, 1048, 1118
BstFNI CGCG 3 cut(s) 94, 186, 252
BstHHI GCGC 3 cut(s) 126, 182, 252
BstKTI GATC 4 cut(s) 98, 823, 1048, 1066
BstMAI GTCTC 1 cut(s) 1117
BstMBI GATC 4 cut(s) 95, 820, 1045, 1063
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNI CCWGG 3 cut(s) 146, 303, 556
BstSCI CCNGG 6 cut(s) 144, 211, 301, 554, 589, 1059
BstSFI CTRYAG 1 cut(s) 715
BstSLI GKGCMC 2 cut(s) 555, 590
BstUI CGCG 3 cut(s) 94, 186, 252
BstV1I GCAGC 2 cut(s) 246, 708
BstX2I RGATCY 1 cut(s) 1063
BstYI RGATCY 1 cut(s) 1063
BsuI GTATCC 2 cut(s) 570, 570
BsuRI GGCC 1 cut(s) 703
BtsCI GGATG 4 cut(s) 390, 811, 1048, 1118
BtsIMutI CAGTG 1 cut(s) 654
Cac8I GCNNGC 2 cut(s) 184, 975
CciI TCATGA 1 cut(s) 865
CfoI GCGC 3 cut(s) 126, 182, 252
Cfr10I RCCGGY 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 130, 199
CseI GACGC 1 cut(s) 175
Csp6I GTAC 2 cut(s) 235, 1036
CspAI ACCGGT 1 cut(s) 349
CviAII CATG 3 cut(s) 503, 624, 866
CviQI GTAC 2 cut(s) 235, 1036
DdeI CTNAG 2 cut(s) 290, 1025
DpnI GATC 4 cut(s) 97, 822, 1047, 1065
DpnII GATC 4 cut(s) 95, 820, 1045, 1063
Eam1104I CTCTTC 4 cut(s) 503, 663, 839, 1146
EarI CTCTTC 4 cut(s) 503, 663, 839, 1146
Eco47I GGWCC 2 cut(s) 130, 199
Eco88I CYCGRG 3 cut(s) 103, 392, 632
EcoO109I RGGNCCY 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 515
EcoRII CCWGG 3 cut(s) 144, 301, 554
EcoT22I ATGCAT 1 cut(s) 952
Esp3I CGTCTC 1 cut(s) 1117
FaeI CATG 3 cut(s) 506, 627, 869
FaiI YATR 8 cut(s) 121, 324, 504, 625, 717, 801, 867, 936
FatI CATG 3 cut(s) 502, 623, 865
FauI CCCGC 3 cut(s) 50, 191, 234
FbaI TGATCA 1 cut(s) 1045
Fnu4HI GCNGC 3 cut(s) 260, 263, 722
FokI GGATG 4 cut(s) 397, 818, 1055, 1125
Fsp4HI GCNGC 3 cut(s) 260, 263, 722
FspBI CTAG 1 cut(s) 1073
GlaI GCGC 3 cut(s) 125, 181, 251
GluI GCNGC 3 cut(s) 260, 263, 722
GsaI CCCAGC 2 cut(s) 66, 77
HaeIII GGCC 1 cut(s) 703
HapII CCGG 6 cut(s) 133, 212, 232, 350, 591, 1060
HgaI GACGC 1 cut(s) 175
HhaI GCGC 3 cut(s) 126, 182, 252
Hin1II CATG 3 cut(s) 506, 627, 869
Hin6I GCGC 3 cut(s) 124, 180, 250
HinP1I GCGC 3 cut(s) 124, 180, 250
HindIII AAGCTT 1 cut(s) 825
HinfI GANTC 3 cut(s) 674, 691, 898
HpaII CCGG 6 cut(s) 133, 212, 232, 350, 591, 1060
HphI GGTGA 1 cut(s) 786
Hpy166II GTNNAC 2 cut(s) 319, 966
Hpy188I TCNGA 2 cut(s) 346, 576
Hpy188III TCNNGA 8 cut(s) 103, 280, 392, 611, 729, 739, 866, 955
Hpy8I GTNNAC 2 cut(s) 319, 966
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 3 cut(s) 739, 994, 1156
HpyCH4III ACNGT 2 cut(s) 798, 853
HpyCH4V TGCA 4 cut(s) 37, 950, 1094, 1144
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 2 cut(s) 290, 1025
Hsp92II CATG 3 cut(s) 506, 627, 869
HspAI GCGC 3 cut(s) 124, 180, 250
KpnI GGTACC 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 1045
Kzo9I GATC 4 cut(s) 95, 820, 1045, 1063
LmnI GCTCC 1 cut(s) 234
Lsp1109I GCAGC 2 cut(s) 246, 708
MaeI CTAG 1 cut(s) 1073
MalI GATC 4 cut(s) 97, 822, 1047, 1065
MbiI CCGCTC 1 cut(s) 229
MboI GATC 4 cut(s) 95, 820, 1045, 1063
MboII GAAGA 6 cut(s) 353, 520, 680, 754, 856, 1163
MflI RGATCY 1 cut(s) 1063
MhlI GDGCHC 2 cut(s) 555, 590
MlyI GAGTC 1 cut(s) 683
MmeI TCCRAC 2 cut(s) 112, 835
Mph1103I ATGCAT 1 cut(s) 952
MroXI GAANNNNTTC 3 cut(s) 351, 950, 962
MseI TTAA 6 cut(s) 333, 380, 414, 711, 891, 1011
MspI CCGG 6 cut(s) 133, 212, 232, 350, 591, 1060
MspR9I CCNGG 6 cut(s) 146, 213, 303, 556, 591, 1061
Mva1269I GAATGC 2 cut(s) 950, 952
MvaI CCWGG 3 cut(s) 146, 303, 556
MvnI CGCG 3 cut(s) 94, 186, 252
MwoI GCNNNNNNNGC 1 cut(s) 256
NciI CCSGG 3 cut(s) 213, 591, 1061
NdeII GATC 4 cut(s) 95, 820, 1045, 1063
NlaIII CATG 3 cut(s) 506, 627, 869
NlaIV GGNNCC 6 cut(s) 236, 348, 552, 587, 629, 1065
NsiI ATGCAT 1 cut(s) 952
NspV TTCGAA 1 cut(s) 944
PaeR7I CTCGAG 2 cut(s) 103, 392
PagI TCATGA 1 cut(s) 865
PctI GAATGC 2 cut(s) 950, 952
PdmI GAANNNNTTC 3 cut(s) 351, 950, 962
PfeI GAWTC 2 cut(s) 691, 898
PinAI ACCGGT 1 cut(s) 349
PkrI GCNGC 3 cut(s) 261, 264, 723
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 3 cut(s) 144, 301, 554
PspFI CCCAGC 2 cut(s) 62, 73
PspGI CCWGG 3 cut(s) 144, 301, 554
PspN4I GGNNCC 6 cut(s) 236, 348, 552, 587, 629, 1065
PspPI GGNCC 2 cut(s) 130, 199
PspPPI RGGWCCY 1 cut(s) 199
PsuI RGATCY 1 cut(s) 1063
RsaI GTAC 2 cut(s) 236, 1037
RsaNI GTAC 2 cut(s) 235, 1036
SaqAI TTAA 6 cut(s) 333, 380, 414, 711, 891, 1011
SatI GCNGC 3 cut(s) 260, 263, 722
Sau3AI GATC 4 cut(s) 95, 820, 1045, 1063
Sau96I GGNCC 2 cut(s) 130, 199
SchI GAGTC 1 cut(s) 683
ScrFI CCNGG 6 cut(s) 146, 213, 303, 556, 591, 1061
SduI GDGCHC 2 cut(s) 555, 590
SfcI CTRYAG 1 cut(s) 715
Sfr274I CTCGAG 2 cut(s) 103, 392
SfuI TTCGAA 1 cut(s) 944
SinI GGWCC 2 cut(s) 130, 199
SlaI CTCGAG 2 cut(s) 103, 392
SmlI CTYRAG 2 cut(s) 103, 392
SmoI CTYRAG 2 cut(s) 103, 392
SsiI CCGC 8 cut(s) 43, 92, 184, 227, 262, 563, 1019, 1138
SspMI CTAG 1 cut(s) 1073
StyD4I CCNGG 6 cut(s) 144, 211, 301, 554, 589, 1059
TaaI ACNGT 2 cut(s) 798, 853
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 2 cut(s) 691, 898
Tru1I TTAA 6 cut(s) 333, 380, 414, 711, 891, 1011
Tru9I TTAA 6 cut(s) 333, 380, 414, 711, 891, 1011
TscAI CASTG 1 cut(s) 654
TseI GCWGC 2 cut(s) 259, 721
TspDTI ATGAA 3 cut(s) 491, 612, 854
TspRI CASTG 1 cut(s) 654
VpaK11BI GGWCC 2 cut(s) 130, 199
XapI RAATTY 3 cut(s) 515, 679, 920
XhoI CTCGAG 2 cut(s) 103, 392
XmnI GAANNNNTTC 3 cut(s) 351, 950, 962
XspI CTAG 1 cut(s) 1073
Zsp2I ATGCAT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.