Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0024422

Physical Location & Seq

Genomic Coordinates Reverse (-)

16750846 .. 16751448

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1105800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTTGGCTTAAGTGGAGCTCTAGAAACCTTGTGCGGCCAGGGGTTTGGAGCAAGGGACTATACGATGTTAGGAATACATTTGCAGGCCTCTTGCATAGTTTCTCTCCCTTTCACCATCTTCATAGCTATACTTTGGTTCTATAGAGAGCCAATACTTATTTCTATCCGCCAGGATCAGCAGATTGCAAAATATGCTGCTCTATATATCAAATATTTTATTCCAGGATTATTTCCTTATGCTAGTTTACAAAATATATTAAGATTTATGCAGACACAATCAGTTGTCTTACTCCTATATTTCTTTTCCGTTATTCAAATGGTTGTTCATGCTGTAATATCATATAGTCTAGTACATTGGACTGCTCTTCATTCCAAGGGAGCTCCTCTAGCAGCTTCAATATCAATATGGATATCGATGCTAATGTTAGTGTTCTTTAAATTTTCATTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009636 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043207 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

152

Amino Acids

17.08

Weight (kDa)

9.23

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 115	1.2e-19	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0024422)

Species	Orthologous Gene IDs
malus_domestica	MD12G1105700.v1.1 MD12G1105800.v1.1
pyrus_communis	pycom12g07480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	36, 169
AclWI	GGATC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	1 cut(s)	354
AflII	CTTAAG	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	317, 399
AjnI	CCWGG	3 cut(s)	39, 171, 223
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	4 cut(s)	20, 128, 383, 395
AluI	AGCT	4 cut(s)	20, 128, 383, 395
Alw21I	GWGCWC	2 cut(s)	22, 385
AlwI	GGATC	1 cut(s)	183
AoxI	GGCC	2 cut(s)	37, 87
ApeKI	GCWGC	2 cut(s)	197, 392
ApoI	RAATTY	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	106
BanII	GRGCYC	2 cut(s)	22, 385
Bbv12I	GWGCWC	2 cut(s)	22, 385
BbvI	GCAGC	2 cut(s)	184, 404
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	3 cut(s)	41, 173, 225
BfaI	CTAG	4 cut(s)	23, 243, 350, 389
BfmI	CTRYAG	1 cut(s)	142
BfrI	CTTAAG	1 cut(s)	10
BisI	GCNGC	3 cut(s)	37, 198, 393
BlsI	GCNGC	3 cut(s)	38, 199, 394
Bme1390I	CCNGG	3 cut(s)	41, 173, 225
BmrFI	CCNGG	3 cut(s)	41, 173, 225
BmsI	GCATC	1 cut(s)	408
Bsa29I	ATCGAT	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	40, 375
BseBI	CCWGG	3 cut(s)	41, 173, 225
BseCI	ATCGAT	1 cut(s)	416
BseDI	CCNNGG	2 cut(s)	40, 375
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	184, 404
BshFI	GGCC	2 cut(s)	39, 89
BshVI	ATCGAT	1 cut(s)	416
BsiHKAI	GWGCWC	2 cut(s)	22, 385
BslFI	GGGAC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	39, 89
Bsp1286I	GDGCHC	2 cut(s)	22, 385
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	2 cut(s)	36, 169
BspANI	GGCC	2 cut(s)	39, 89
BspDI	ATCGAT	1 cut(s)	416
BspPI	GGATC	1 cut(s)	183
BspQI	GCTCTTC	1 cut(s)	372
BspTI	CTTAAG	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	40, 375
BssMI	GATC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	3 cut(s)	41, 173, 225
Bst6I	CTCTTC	1 cut(s)	372
BstAFI	CTTAAG	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 389
BstNI	CCWGG	3 cut(s)	41, 173, 225
BstSCI	CCNGG	3 cut(s)	39, 171, 223
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	184, 404
BstXI	CCANNNNNNTGG	1 cut(s)	47
Bsu15I	ATCGAT	1 cut(s)	416
BsuRI	GGCC	2 cut(s)	39, 89
BsuTUI	ATCGAT	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	87
ClaI	ATCGAT	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	8 cut(s)	9, 20, 39, 89, 128, 151, 383, 395
CviKI_1	RGCY	8 cut(s)	9, 20, 39, 89, 128, 151, 383, 395
CviQI	GTAC	1 cut(s)	353
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
DraI	TTTAAA	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	158
Ecl136II	GAGCTC	2 cut(s)	20, 383
Eco130I	CCWWGG	1 cut(s)	375
Eco147I	AGGCCT	1 cut(s)	89
Eco24I	GRGCYC	2 cut(s)	22, 385
Eco32I	GATATC	1 cut(s)	414
Eco53kI	GAGCTC	2 cut(s)	20, 383
EcoICRI	GAGCTC	2 cut(s)	20, 383
EcoRII	CCWGG	3 cut(s)	39, 171, 223
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	2 cut(s)	22, 385
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	1 cut(s)	332
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	37, 198, 393
FriOI	GRGCYC	2 cut(s)	22, 385
Fsp4HI	GCNGC	3 cut(s)	37, 198, 393
FspBI	CTAG	4 cut(s)	23, 243, 350, 389
GluI	GCNGC	3 cut(s)	37, 198, 393
HaeIII	GGCC	2 cut(s)	39, 89
Hin1II	CATG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	248
HpyCH4V	TGCA	4 cut(s)	85, 96, 188, 271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 389
Hsp92II	CATG	1 cut(s)	332
Kzo9I	GATC	1 cut(s)	175
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	4 cut(s)	17, 50, 380, 388
LpnPI	CCDG	7 cut(s)	26, 53, 71, 158, 185, 210, 237
Lsp1109I	GCAGC	2 cut(s)	184, 404
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	4 cut(s)	23, 243, 350, 389
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	112, 359
MhlI	GDGCHC	2 cut(s)	22, 385
MluCI	AATT	1 cut(s)	440
MnlI	CCTC	2 cut(s)	100, 396
MseI	TTAA	4 cut(s)	11, 260, 438, 454
MspCI	CTTAAG	1 cut(s)	10
MspR9I	CCNGG	3 cut(s)	41, 173, 225
MvaI	CCWGG	3 cut(s)	41, 173, 225
MwoI	GCNNNNNNNGC	2 cut(s)	194, 389
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	89
PciSI	GCTCTTC	1 cut(s)	372
PfoI	TCCNGGA	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	38, 199, 394
Psp124BI	GAGCTC	2 cut(s)	22, 385
Psp6I	CCWGG	3 cut(s)	39, 171, 223
PspGI	CCWGG	3 cut(s)	39, 171, 223
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SacI	GAGCTC	2 cut(s)	22, 385
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	4 cut(s)	11, 260, 438, 454
SatI	GCNGC	3 cut(s)	37, 198, 393
Sau3AI	GATC	1 cut(s)	175
ScrFI	CCNGG	3 cut(s)	41, 173, 225
SduI	GDGCHC	2 cut(s)	22, 385
SetI	ASST	5 cut(s)	22, 32, 130, 385, 397
SfaNI	GCATC	1 cut(s)	408
SfcI	CTRYAG	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	1 cut(s)	440
SseBI	AGGCCT	1 cut(s)	89
SsiI	CCGC	2 cut(s)	36, 169
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	4 cut(s)	23, 243, 350, 389
SstI	GAGCTC	2 cut(s)	22, 385
StuI	AGGCCT	1 cut(s)	89
StyD4I	CCNGG	3 cut(s)	39, 171, 223
StyI	CCWWGG	1 cut(s)	375
TaqI	TCGA	1 cut(s)	416
TasI	AATT	1 cut(s)	440
TatI	WGTACW	1 cut(s)	352
TauI	GCSGC	1 cut(s)	39
Tru1I	TTAA	4 cut(s)	11, 260, 438, 454
Tru9I	TTAA	4 cut(s)	11, 260, 438, 454
TseI	GCWGC	2 cut(s)	197, 392
TspDTI	ATGAA	4 cut(s)	112, 317, 359, 435
TspGWI	ACGGA	1 cut(s)	298
Vha464I	CTTAAG	1 cut(s)	10
XapI	RAATTY	1 cut(s)	440
XbaI	TCTAGA	1 cut(s)	22
XspI	CTAG	4 cut(s)	23, 243, 350, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.