Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0020828

Physical Location & Seq

Genomic Coordinates Reverse (-)

22517221 .. 22518048

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1146500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTGTTTCACGCTTCTAATACTACTTGTACTAGTCAGCATAGCAGCTGCTGAAGATCTCACTTTCGCCTACCATGGTTTCCGGTCTGCAAATCTTAGCCTAGACGGCATAGCAAGAGTGACACCCAATGGTCTTCTGAGGCTTATAAATGACACTAGATTCATGATTGGTCATGCCTTCCATCCCAACACAGTAATTTTCAAGAACTCATCCAACGCTTCAGTTCTCTCATTCTCTACCACTTTCATCTTTGCTATGAGATATACAGGTCTCTATGGCCATGGAATAGCCTTTGTCATCACTCCAACAGGAGGGTTGCCCCATGCTGCTTCAGCCCAATACCTAGGCCTTTTCAACCGCACAAATGATGGCAGCCCAACAAATCATATTTTTGCTGTAGAGCTTGACACTTTTCAAAACCAAAAGTTCAATGACATCAACGATAACCATGTTGGGATTGATATTAATGGTATGGCCTCTGAGGTGGCTTCTCCTGCCGGATATTATGTCGGAGAAAGATTGATCACCAGTGGCCAACTGGTACAAGTTTGGGTGGACTATGATGGTAGCAAGAAGCAAATCAATGCCTCTTTGGCTCCTGTTAGTAATGGTAAGCTATATAGTCCACTTTTGTCTTTGACACGAGACTTTTCCCTAGTTCTTCACAGAACCATGTACGTGGGCTTCTCCTCGTCCACTGCCCAGCTTACTACTTCTGCTTACCTCGTGGGGTGGAGCTTTAAGATAAATGGTCAGGCTGAAGAACTTGCTCTCTCACAACTTCCCAAGATGTCTCGGCTAGGACCTAAAAAAATATCTAAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

276

Amino Acids

29.96

Weight (kDa)

8.93

Isoelectric Point (pI)

22.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	20 - 262	5.4e-74	Legume lectin domain
Lectin_L-type_dom	PF18483	129 - 237	7.2e-06	Legume lectin beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37710
malus_domestica	MD04G1133500.v1.1 MD12G1146300.v1.1 MD12G1146500.v1.1
pyrus_communis	pycom12g14020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
AciI	CCGC	1 cut(s)	358
AcoI	YGGCCR	2 cut(s)	277, 532
AcuI	CTGAAG	4 cut(s)	72, 204, 315, 780
AfaI	GTAC	3 cut(s)	30, 543, 677
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	4 cut(s)	202, 355, 416, 430
AhlI	ACTAGT	1 cut(s)	31
AluBI	AGCT	5 cut(s)	47, 403, 616, 706, 738
AluI	AGCT	5 cut(s)	47, 403, 616, 706, 738
Alw26I	GTCTC	3 cut(s)	275, 639, 798
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	4 cut(s)	277, 346, 474, 532
ApeKI	GCWGC	4 cut(s)	44, 47, 326, 372
AseI	ATTAAT	1 cut(s)	465
AspA2I	CCTAGG	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	803
AsuHPI	GGTGA	1 cut(s)	517
AvaII	GGWCC	1 cut(s)	803
AvrII	CCTAGG	1 cut(s)	343
BalI	TGGCCA	2 cut(s)	279, 534
BarI	GAAGNNNNNNTAC	2 cut(s)	668, 700
BauI	CACGAG	2 cut(s)	642, 725
BbsI	GAAGAC	1 cut(s)	125
BbvI	GCAGC	4 cut(s)	34, 56, 313, 384
BccI	CCATC	3 cut(s)	189, 362, 557
BceAI	ACGGC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	522
BcoDI	GTCTC	3 cut(s)	275, 639, 798
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	6 cut(s)	32, 101, 156, 344, 656, 800
BfmI	CTRYAG	1 cut(s)	396
BglI	GCCNNNNNGGC	2 cut(s)	105, 593
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	4 cut(s)	45, 48, 327, 373
BlnI	CCTAGG	1 cut(s)	343
BlsI	GCNGC	4 cut(s)	46, 49, 328, 374
Bme18I	GGWCC	1 cut(s)	803
BmgT120I	GGNCC	1 cut(s)	803
BmiI	GGNNCC	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	679
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	3 cut(s)	73, 280, 343
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse1I	ACTGG	2 cut(s)	528, 543
BseDI	CCNNGG	3 cut(s)	73, 280, 343
BseGI	GGATG	2 cut(s)	181, 209
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMII	CTCAG	2 cut(s)	128, 471
BseNI	ACTGG	2 cut(s)	528, 543
BseRI	GAGGAG	1 cut(s)	679
BseXI	GCAGC	4 cut(s)	34, 56, 313, 384
BseYI	CCCAGC	1 cut(s)	702
BshFI	GGCC	4 cut(s)	279, 348, 476, 534
BsiSI	CCGG	2 cut(s)	82, 498
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	3 cut(s)	275, 639, 798
BsnI	GGCC	4 cut(s)	279, 348, 476, 534
Bso31I	GGTCTC	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	55, 522
Bsp19I	CCATGG	2 cut(s)	73, 280
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	4 cut(s)	279, 348, 476, 534
BspCNI	CTCAG	2 cut(s)	129, 472
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	597
BspTNI	GGTCTC	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	528, 543
BssECI	CCNNGG	3 cut(s)	73, 280, 343
BssMI	GATC	2 cut(s)	55, 522
BssSI	CACGAG	2 cut(s)	642, 725
BssT1I	CCWWGG	3 cut(s)	73, 280, 343
Bst2BI	CACGAG	2 cut(s)	642, 725
Bst4CI	ACNGT	1 cut(s)	193
BstBAI	YACGTR	1 cut(s)	679
BstDEI	CTNAG	3 cut(s)	95, 137, 480
BstDSI	CCRYGG	2 cut(s)	73, 280
BstF5I	GGATG	2 cut(s)	181, 209
BstKTI	GATC	2 cut(s)	58, 525
BstMAI	GTCTC	3 cut(s)	275, 639, 798
BstMBI	GATC	2 cut(s)	55, 522
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 332, 494, 593
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	4 cut(s)	34, 56, 313, 384
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	4 cut(s)	279, 348, 476, 534
BtgI	CCRYGG	2 cut(s)	73, 280
BtsCI	GGATG	2 cut(s)	181, 209
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	2 cut(s)	535, 696
CaiI	CAGNNNCTG	1 cut(s)	50
CciI	TCATGA	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	803
Csp6I	GTAC	3 cut(s)	29, 542, 676
CviAII	CATG	7 cut(s)	74, 163, 173, 281, 323, 449, 673
CviQI	GTAC	3 cut(s)	29, 542, 676
DdeI	CTNAG	3 cut(s)	95, 137, 480
DpnI	GATC	2 cut(s)	57, 524
DpnII	GATC	2 cut(s)	55, 522
EaeI	YGGCCR	2 cut(s)	277, 532
Eco130I	CCWWGG	3 cut(s)	73, 280, 343
Eco147I	AGGCCT	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	803
Eco57I	CTGAAG	4 cut(s)	72, 204, 315, 780
EcoO109I	RGGNCCY	1 cut(s)	803
EcoT14I	CCWWGG	3 cut(s)	73, 280, 343
ErhI	CCWWGG	3 cut(s)	73, 280, 343
FaeI	CATG	7 cut(s)	77, 166, 176, 284, 326, 452, 676
FatI	CATG	7 cut(s)	73, 162, 172, 280, 322, 448, 672
FbaI	TGATCA	1 cut(s)	522
Fnu4HI	GCNGC	4 cut(s)	45, 48, 327, 373
FokI	GGATG	2 cut(s)	168, 196
Fsp4HI	GCNGC	4 cut(s)	45, 48, 327, 373
FspBI	CTAG	6 cut(s)	32, 101, 156, 344, 656, 800
GluI	GCNGC	4 cut(s)	45, 48, 327, 373
GsaI	CCCAGC	1 cut(s)	706
HaeIII	GGCC	4 cut(s)	279, 348, 476, 534
HapII	CCGG	2 cut(s)	82, 498
Hin1II	CATG	7 cut(s)	77, 166, 176, 284, 326, 452, 676
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	2 cut(s)	82, 498
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	3 cut(s)	556, 626, 696
Hpy188I	TCNGA	3 cut(s)	138, 481, 512
Hpy188III	TCNNGA	2 cut(s)	163, 202
Hpy8I	GTNNAC	3 cut(s)	556, 626, 696
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 332, 494, 593
HpyF3I	CTNAG	3 cut(s)	95, 137, 480
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	7 cut(s)	77, 166, 176, 284, 326, 452, 676
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	2 cut(s)	55, 522
LmnI	GCTCC	2 cut(s)	601, 735
Lsp1109I	GCAGC	4 cut(s)	34, 56, 313, 384
MaeI	CTAG	6 cut(s)	32, 101, 156, 344, 656, 800
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	57, 524
MboI	GATC	2 cut(s)	55, 522
MboII	GAAGA	4 cut(s)	65, 125, 653, 773
MflI	RGATCY	1 cut(s)	55
MlsI	TGGCCA	2 cut(s)	279, 534
MluCI	AATT	1 cut(s)	195
MluNI	TGGCCA	2 cut(s)	279, 534
MmeI	TCCRAC	3 cut(s)	237, 329, 490
MnlI	CCTC	7 cut(s)	132, 305, 475, 487, 598, 700, 734
Mox20I	TGGCCA	2 cut(s)	279, 534
MscI	TGGCCA	2 cut(s)	279, 534
MseI	TTAA	2 cut(s)	465, 741
MslI	CAYNNNNRTG	1 cut(s)	677
Msp20I	TGGCCA	2 cut(s)	279, 534
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	2 cut(s)	82, 498
MwoI	GCNNNNNNNGC	4 cut(s)	105, 332, 494, 593
NcoI	CCATGG	2 cut(s)	73, 280
NdeII	GATC	2 cut(s)	55, 522
NlaIII	CATG	7 cut(s)	77, 166, 176, 284, 326, 452, 676
NlaIV	GGNNCC	1 cut(s)	597
NmeAIII	GCCGAG	1 cut(s)	775
NmuCI	GTSAC	1 cut(s)	118
PagI	TCATGA	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	159
PkrI	GCNGC	4 cut(s)	46, 49, 328, 374
Ppu21I	YACGTR	1 cut(s)	679
PpuMI	RGGWCCY	1 cut(s)	803
PshBI	ATTAAT	1 cut(s)	465
PsiI	TTATAA	1 cut(s)	146
Psp5II	RGGWCCY	1 cut(s)	803
PspFI	CCCAGC	1 cut(s)	702
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	803
PspPPI	RGGWCCY	1 cut(s)	803
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	3 cut(s)	30, 543, 677
RsaNI	GTAC	3 cut(s)	29, 542, 676
RseI	CAYNNNNRTG	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	465, 741
SatI	GCNGC	4 cut(s)	45, 48, 327, 373
Sau3AI	GATC	2 cut(s)	55, 522
Sau96I	GGNCC	1 cut(s)	803
SfcI	CTRYAG	1 cut(s)	396
SinI	GGWCC	1 cut(s)	803
SmiMI	CAYNNNNRTG	1 cut(s)	677
SpeI	ACTAGT	1 cut(s)	31
Sse9I	AATT	1 cut(s)	195
SseBI	AGGCCT	1 cut(s)	348
SsiI	CCGC	1 cut(s)	358
SspMI	CTAG	6 cut(s)	32, 101, 156, 344, 656, 800
StuI	AGGCCT	1 cut(s)	348
StyI	CCWWGG	3 cut(s)	73, 280, 343
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	681
TasI	AATT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	2 cut(s)	465, 741
Tru9I	TTAA	2 cut(s)	465, 741
TscAI	CASTG	2 cut(s)	535, 703
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	4 cut(s)	44, 47, 326, 372
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	151, 235
TspRI	CASTG	2 cut(s)	535, 703
VpaK11BI	GGWCC	1 cut(s)	803
VspI	ATTAAT	1 cut(s)	465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmaJI	CCTAGG	1 cut(s)	343
XspI	CTAG	6 cut(s)	32, 101, 156, 344, 656, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.