MD12G1176300.v1.1

histone H3

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
25655509 .. 25662532
7024 bp
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UTR
Exon/CDS
Intron
MD12G1176300.v1.1.491

Sequence Viewer

Length: 198 bp
ATGGCACCAACGTCGGCAAGAGCAGCGATTAGACTATCAAGAAGTTTGTCGGACTTCATCAACGAGATCAAAGCTGATCAGAATGTTCTCTTTGAGCTGGTCTTGGCTTCAATCAAATCAGCACCCACAACTGGAGGAGTCAAGAAGCCTGACCGCTACCGCCCTGGAATCGTCACTCTTCGTGAAAAAACATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

66

Amino Acids

7.16

Weight (kDa)

10.11

Isoelectric Point (pI)

20.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024411)

Species Orthologous Gene IDs
malus_domestica MD04G1002100.v1.1 MD12G1176300.v1.1
pyrus_communis pycom08g10830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 2 cut(s) 154, 160
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 111
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 2 cut(s) 74, 97
AluI AGCT 2 cut(s) 74, 97
ApeKI GCWGC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 35
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 165
BclI TGATCA 1 cut(s) 76
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 4
BslI CCNNNNNNNGG 1 cut(s) 131
Bsp143I GATC 2 cut(s) 66, 76
BspACI CCGC 2 cut(s) 154, 160
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 66, 76
Bst2UI CCWGG 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 183
BstKTI GATC 2 cut(s) 69, 79
BstMBI GATC 2 cut(s) 66, 76
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 35
CviJI RGCY 4 cut(s) 74, 97, 107, 148
CviKI_1 RGCY 4 cut(s) 74, 97, 107, 148
DpnI GATC 2 cut(s) 68, 78
DpnII GATC 2 cut(s) 66, 76
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 163
FaiI YATR 1 cut(s) 193
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 153
HinfI GANTC 2 cut(s) 138, 168
Hpy188I TCNGA 2 cut(s) 52, 81
Hpy188III TCNNGA 3 cut(s) 39, 142, 182
Hpy99I CGWCG 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 2 cut(s) 66, 76
LpnPI CCDG 5 cut(s) 83, 117, 150, 162, 177
Lsp1109I GCAGC 1 cut(s) 35
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 68, 78
MboI GATC 2 cut(s) 66, 76
MboII GAAGA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 2 cut(s) 66, 76
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 6
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 2 cut(s) 66, 76
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 165
SetI ASST 3 cut(s) 14, 76, 99
SsiI CCGC 2 cut(s) 154, 160
StyD4I CCNGG 1 cut(s) 163
TaiI ACGT 1 cut(s) 14
TfiI GAWTC 1 cut(s) 168
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.