Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0024242

Physical Location & Seq

Genomic Coordinates Reverse (-)

879521 .. 880624

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1014100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCAATGCAAGATTTGAGAACTCTTGTTGCGGAAAGGTCAGTGATGCCGATTTACATAAGGGGCGAATCTTTTGAAATTCCATACCGTTCCATTGGATTTCTGTTAGAGGGTTTCGTTAAAACCCAAGGTGTCCAAGAAGAACTTATCACATCACCTGCACCTCTATTCCCCTCACATGGTTACCAGAGCTTCCAGAATCTGGAAACATCAGGCACCAGGGGAGCCAGTTTTTCTCATAAAGGATCCAGTTATCTCGTTGAAACAAGGTCGAGAGTGATCATATTCGACGTTGCAGCATTTGAATCCGACAGTGCTCTGATTAGATGCTCATCCTCATTTATATCAAATGGAGTTGATCATCATCCTCACAGGTCTCTTCCTAGAGAGCATAGTGGTCTTATGAGTTGGCCTGAGGACATTTTCAAAGCAAAGCAACAAAAGCAGAACCCCGAAGGGATTGACAGACAAATCAACAGCCTGTCAGCGAGGGCGATGCAGTTCAGCATTTACGGCAGCATGGTGAATCCACAGAGGTGCGCTCGAAGCTTTCTGAGAAGTGGCCCGATTAATCCACCACGCACCCTGTCATATCCAAGCATGCCATCGTATCGAGGCCGTTCACACAAGGTATCATATCCAAGTGTTCCATCTCATCACAACAGTCCACTGGTTTCAGTCAGATCAGAAGGGGCAACAACTGTGAGAAAGGATTATGAAGCGAGAAAAGTCACGGCCCAATCAAGTCTTCTAGGGCAGCAAAGTACAGAACCAAATAAGAGCCATGTGGTAAACGATTCGAGTGATGAATCGGGTGGTGAGGATGATGTAACAGTGAGAATCGATTCACCAGGTAGGCTTTCTTTTTGCCAGGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019222 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031323 GO:0031967 GO:0031975 GO:0034220 GO:0035725 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1901700 GO:1902600 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger cNMP_binding

Protein Analysis

294

Amino Acids

32.48

Weight (kDa)

8.75

Isoelectric Point (pI)

58.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024242)

Species	Orthologous Gene IDs
malus_domestica	MD13G1014100.v1.1 MD16G1011200.v1.1
pyrus_communis	pycom13g01200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	166
Acc36I	ACCTGC	1 cut(s)	166
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	202
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	2 cut(s)	240, 253
AcsI	RAATTY	1 cut(s)	78
AfaI	GTAC	1 cut(s)	766
AfiI	CCNNNNNNNGG	2 cut(s)	179, 202
AgsI	TTSAA	4 cut(s)	77, 263, 305, 427
AjnI	CCWGG	3 cut(s)	218, 850, 870
AjuI	GAANNNNNNNTTGG	2 cut(s)	732, 764
AleI	CACNNNNGTG	1 cut(s)	535
AluBI	AGCT	2 cut(s)	192, 549
AluI	AGCT	2 cut(s)	192, 549
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	2 cut(s)	240, 253
AlwNI	CAGNNNCTG	1 cut(s)	202
AoxI	GGCC	4 cut(s)	410, 562, 616, 735
ApeKI	GCWGC	3 cut(s)	296, 516, 757
ApoI	RAATTY	1 cut(s)	78
AseI	ATTAAT	1 cut(s)	570
Asp700I	GAANNNNTTC	1 cut(s)	844
AspLEI	GCGC	1 cut(s)	542
AspS9I	GGNCC	2 cut(s)	563, 736
AsuHPI	GGTGA	4 cut(s)	147, 535, 830, 840
AxyI	CCTNAGG	1 cut(s)	414
BamHI	GGATCC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	740
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	3 cut(s)	308, 528, 769
BccI	CCATC	2 cut(s)	613, 658
BceAI	ACGGC	3 cut(s)	529, 603, 750
BcgI	CGANNNNNNTGC	2 cut(s)	478, 512
BciT130I	CCWGG	3 cut(s)	220, 852, 872
BclI	TGATCA	2 cut(s)	279, 358
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	2 cut(s)	384, 752
BfuAI	ACCTGC	1 cut(s)	166
BisI	GCNGC	3 cut(s)	297, 517, 758
BlsI	GCNGC	3 cut(s)	298, 518, 759
Bme1390I	CCNGG	3 cut(s)	220, 852, 872
BmgT120I	GGNCC	2 cut(s)	563, 736
BmiI	GGNNCC	4 cut(s)	217, 226, 247, 876
BmrFI	CCNGG	3 cut(s)	220, 852, 872
BmsI	GCATC	3 cut(s)	36, 317, 486
BpiI	GAAGAC	1 cut(s)	740
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
Bsa29I	ATCGAT	1 cut(s)	843
BsaBI	GATNNNNATC	2 cut(s)	331, 363
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	127, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 202
Bse1I	ACTGG	3 cut(s)	228, 249, 675
Bse21I	CCTNAGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	12
Bse8I	GATNNNNATC	2 cut(s)	331, 363
BseBI	CCWGG	3 cut(s)	220, 852, 872
BseCI	ATCGAT	1 cut(s)	843
BseDI	CCNNGG	2 cut(s)	127, 219
BseGI	GGATG	3 cut(s)	332, 364, 829
BseJI	GATNNNNATC	2 cut(s)	331, 363
BseLI	CCNNNNNNNGG	2 cut(s)	179, 202
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	405, 545
BseNI	ACTGG	3 cut(s)	228, 249, 675
BseXI	GCAGC	3 cut(s)	308, 528, 769
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	4 cut(s)	412, 564, 618, 737
BshNI	GGYRCC	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	843
BsiHKAI	GWGCWC	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	179, 202
BsmAI	GTCTC	1 cut(s)	381
BsnI	GGCC	4 cut(s)	412, 564, 618, 737
Bso31I	GGTCTC	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	4 cut(s)	245, 279, 358, 683
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	4 cut(s)	412, 564, 618, 737
BspCNI	CTCAG	2 cut(s)	406, 546
BspDI	ATCGAT	1 cut(s)	843
BspLI	GGNNCC	4 cut(s)	217, 226, 247, 876
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	2 cut(s)	240, 253
BspT107I	GGYRCC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	381
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	228, 249, 675
BssECI	CCNNGG	2 cut(s)	127, 219
BssMI	GATC	4 cut(s)	245, 279, 358, 683
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	3 cut(s)	220, 852, 872
Bst4CI	ACNGT	5 cut(s)	89, 314, 665, 703, 835
Bst6I	CTCTTC	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	602
BstDEI	CTNAG	2 cut(s)	414, 554
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	3 cut(s)	332, 364, 829
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	4 cut(s)	248, 282, 361, 686
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	4 cut(s)	245, 279, 358, 683
BstMWI	GCNNNNNNNGC	3 cut(s)	442, 513, 546
BstNI	CCWGG	3 cut(s)	220, 852, 872
BstNSI	RCATGY	1 cut(s)	604
BstPI	GGTNACC	1 cut(s)	182
BstSCI	CCNGG	3 cut(s)	218, 850, 870
BstV1I	GCAGC	3 cut(s)	308, 528, 769
BstV2I	GAAGAC	1 cut(s)	740
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
Bsu15I	ATCGAT	1 cut(s)	843
Bsu36I	CCTNAGG	1 cut(s)	414
BsuRI	GGCC	4 cut(s)	412, 564, 618, 737
BsuTUI	ATCGAT	1 cut(s)	843
BtgZI	GCGATG	1 cut(s)	509
BtsCI	GGATG	3 cut(s)	332, 364, 829
BtsIMutI	CAGTG	4 cut(s)	48, 319, 668, 840
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	602
CaiI	CAGNNNCTG	1 cut(s)	202
CfoI	GCGC	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	563, 736
ClaI	ATCGAT	1 cut(s)	843
CsiI	ACCWGGT	1 cut(s)	850
Csp6I	GTAC	1 cut(s)	765
CviAII	CATG	4 cut(s)	179, 520, 601, 785
CviQI	GTAC	1 cut(s)	765
DdeI	CTNAG	2 cut(s)	414, 554
DpnI	GATC	4 cut(s)	247, 281, 360, 685
DpnII	GATC	4 cut(s)	245, 279, 358, 683
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	381
Eco81I	CCTNAGG	1 cut(s)	414
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
EcoRII	CCWGG	3 cut(s)	218, 850, 870
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	4 cut(s)	182, 523, 604, 788
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	4 cut(s)	178, 519, 600, 784
FbaI	TGATCA	2 cut(s)	279, 358
Fnu4HI	GCNGC	3 cut(s)	297, 517, 758
FokI	GGATG	3 cut(s)	319, 351, 836
Fsp4HI	GCNGC	3 cut(s)	297, 517, 758
FspBI	CTAG	2 cut(s)	384, 752
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	3 cut(s)	297, 517, 758
HaeIII	GGCC	4 cut(s)	412, 564, 618, 737
HhaI	GCGC	1 cut(s)	542
Hin1II	CATG	4 cut(s)	182, 523, 604, 788
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HindIII	AAGCTT	1 cut(s)	547
HinfI	GANTC	8 cut(s)	68, 199, 305, 526, 797, 809, 840, 845
HphI	GGTGA	4 cut(s)	147, 535, 830, 840
Hpy166II	GTNNAC	3 cut(s)	623, 668, 793
Hpy188I	TCNGA	5 cut(s)	310, 321, 555, 683, 688
Hpy188III	TCNNGA	3 cut(s)	196, 203, 273
Hpy8I	GTNNAC	3 cut(s)	623, 668, 793
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	449, 683
HpyCH4III	ACNGT	5 cut(s)	89, 314, 665, 703, 835
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	10, 161, 296, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	442, 513, 546
HpyF3I	CTNAG	2 cut(s)	414, 554
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	4 cut(s)	182, 523, 604, 788
HspAI	GCGC	1 cut(s)	540
Ksp22I	TGATCA	2 cut(s)	279, 358
Kzo9I	GATC	4 cut(s)	245, 279, 358, 683
LmnI	GCTCC	2 cut(s)	224, 880
Lsp1109I	GCAGC	3 cut(s)	308, 528, 769
LweI	GCATC	3 cut(s)	36, 317, 486
MabI	ACCWGGT	1 cut(s)	850
MaeI	CTAG	2 cut(s)	384, 752
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	3 cut(s)	182, 730, 829
MalI	GATC	4 cut(s)	247, 281, 360, 685
MboI	GATC	4 cut(s)	245, 279, 358, 683
MboII	GAAGA	3 cut(s)	152, 371, 740
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	844
MseI	TTAA	2 cut(s)	120, 570
MslI	CAYNNNNRTG	1 cut(s)	535
MspR9I	CCNGG	3 cut(s)	220, 852, 872
MvaI	CCWGG	3 cut(s)	220, 852, 872
MwoI	GCNNNNNNNGC	3 cut(s)	442, 513, 546
NdeII	GATC	4 cut(s)	245, 279, 358, 683
NlaIII	CATG	4 cut(s)	182, 523, 604, 788
NlaIV	GGNNCC	4 cut(s)	217, 226, 247, 876
NmuCI	GTSAC	1 cut(s)	730
NspI	RCATGY	1 cut(s)	604
OliI	CACNNNNGTG	1 cut(s)	535
PaeI	GCATGC	1 cut(s)	604
PaqCI	CACCTGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	844
PfeI	GAWTC	8 cut(s)	68, 199, 305, 526, 797, 809, 840, 845
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	298, 518, 759
PshBI	ATTAAT	1 cut(s)	570
Psp6I	CCWGG	3 cut(s)	218, 850, 870
PspEI	GGTNACC	1 cut(s)	182
PspGI	CCWGG	3 cut(s)	218, 850, 870
PspN4I	GGNNCC	4 cut(s)	217, 226, 247, 876
PspPI	GGNCC	2 cut(s)	563, 736
PstNI	CAGNNNCTG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	1 cut(s)	766
RsaNI	GTAC	1 cut(s)	765
RseI	CAYNNNNRTG	1 cut(s)	535
SaqAI	TTAA	2 cut(s)	120, 570
SatI	GCNGC	3 cut(s)	297, 517, 758
Sau3AI	GATC	4 cut(s)	245, 279, 358, 683
Sau96I	GGNCC	2 cut(s)	563, 736
ScrFI	CCNGG	3 cut(s)	220, 852, 872
SduI	GDGCHC	1 cut(s)	319
SexAI	ACCWGGT	1 cut(s)	850
SfaNI	GCATC	3 cut(s)	36, 317, 486
SmiMI	CAYNNNNRTG	1 cut(s)	535
SphI	GCATGC	1 cut(s)	604
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	2 cut(s)	384, 752
StyD4I	CCNGG	3 cut(s)	218, 850, 870
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	5 cut(s)	89, 314, 665, 703, 835
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	6 cut(s)	272, 288, 544, 613, 800, 843
TasI	AATT	1 cut(s)	78
TatI	WGTACW	1 cut(s)	764
TfiI	GAWTC	8 cut(s)	68, 199, 305, 526, 797, 809, 840, 845
Tru1I	TTAA	2 cut(s)	120, 570
Tru9I	TTAA	2 cut(s)	120, 570
TscAI	CASTG	4 cut(s)	48, 319, 675, 840
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	3 cut(s)	296, 516, 757
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	2 cut(s)	732, 822
TspRI	CASTG	4 cut(s)	48, 319, 675, 840
Van91I	CCANNNNNTGG	1 cut(s)	202
VspI	ATTAAT	1 cut(s)	570
XapI	RAATTY	1 cut(s)	78
XceI	RCATGY	1 cut(s)	604
XmnI	GAANNNNTTC	1 cut(s)	844
XspI	CTAG	2 cut(s)	384, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.