Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0024242

Physical Location & Seq

Genomic Coordinates Reverse (-)

848425 .. 849268

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1011200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCCATCATATCAAGGCCGTTCACACAATGTGTCATATCCTACTGTTCCATCATATCACGGCCGTCCACTGGTTTCAGTCAGATCAGAAGGGGCAACAACTGTGAGAAAGAACCTTGAAGTGAGAAAATTCAGAGGCCCAACAAATCCTCCAGGGCAGCAAAGTACAAACCCAAATAAGAGCCACGAGGTAGACAATTCGAGTGATGGATCGGGTGGTGACGATGATTTAATTGTGAGAGTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019222 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031323 GO:0031967 GO:0031975 GO:0034220 GO:0035725 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1901700 GO:1902600 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger cNMP_binding

Protein Analysis

83

Amino Acids

8.93

Weight (kDa)

8.16

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024242)

Species	Orthologous Gene IDs
malus_domestica	MD13G1014100.v1.1 MD16G1011200.v1.1
pyrus_communis	pycom13g01200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	31
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	151
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	3 cut(s)	16, 61, 136
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	230
BauI	CACGAG	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	13, 58, 200
BceAI	ACGGC	3 cut(s)	3, 48, 76
BciT130I	CCWGG	1 cut(s)	153
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	75
BseX3I	CGGCCG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	3 cut(s)	18, 63, 138
BsiEI	CGRYCG	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	70
BsnI	GGCC	3 cut(s)	18, 63, 138
Bsp143I	GATC	2 cut(s)	83, 209
BspANI	GGCC	3 cut(s)	18, 63, 138
BspPI	GGATC	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	2 cut(s)	83, 209
BssSI	CACGAG	1 cut(s)	185
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	46, 103
BstKTI	GATC	2 cut(s)	86, 212
BstMBI	GATC	2 cut(s)	83, 209
BstMCI	CGRYCG	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	169
BstZI	CGGCCG	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	18, 63, 138
BtsIMutI	CAGTG	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	165
CviJI	RGCY	4 cut(s)	18, 63, 138, 183
CviKI_1	RGCY	4 cut(s)	18, 63, 138, 183
CviQI	GTAC	1 cut(s)	165
DpnI	GATC	2 cut(s)	85, 211
DpnII	GATC	2 cut(s)	83, 209
DraIII	CACNNNGTG	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	61
EagI	CGGCCG	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	61
Eco52I	CGGCCG	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	151
FaiI	YATR	3 cut(s)	10, 37, 55
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	158
GluI	GCNGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	18, 63, 138
HinfI	GANTC	1 cut(s)	240
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	3 cut(s)	23, 68, 193
Hpy188I	TCNGA	3 cut(s)	83, 88, 134
Hpy8I	GTNNAC	3 cut(s)	23, 68, 193
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	2 cut(s)	46, 103
Kzo9I	GATC	2 cut(s)	83, 209
LpnPI	CCDG	3 cut(s)	56, 138, 165
Lsp1109I	GCAGC	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	2 cut(s)	85, 211
MboI	GATC	2 cut(s)	83, 209
MluCI	AATT	3 cut(s)	128, 196, 231
MlyI	GAGTC	1 cut(s)	249
MnlI	CCTC	3 cut(s)	128, 159, 181
MseI	TTAA	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	153
NdeII	GATC	2 cut(s)	83, 209
NmuCI	GTSAC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	2 cut(s)	83, 209
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	2 cut(s)	117, 192
Sse9I	AATT	3 cut(s)	128, 196, 231
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	46, 103
TaqI	TCGA	2 cut(s)	200, 243
TasI	AATT	3 cut(s)	128, 196, 231
TatI	WGTACW	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	218
TspRI	CASTG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.