Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0024242

Physical Location & Seq

Genomic Coordinates Reverse (-)

775796 .. 777316

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTTCTGCTTTTTCCTCATGGATAATATCATGGATGAGAATCATTTGTGGCAGTGGACCAGTAAGAGCATAAAAAACAAGCACTCGCTGCATCCAACTTTTACTCACAACATTACTTTGGGGCTGTATGAAGCGCTAACCGGAAAGCCCTACATTTGTGACATGATCACTGATTCTGAAAGTTCTATTGCTCTTGTGAAACTTTTCCTTCCACAAATATTTGAGAAAATGGCAATGCAAGATTTGAGAACTCTTGTTGCAGAAAGGTCAGTGATGCCGATTCACATAAGGGGCGAATCTTTTGAAATTCCATACCGTTCCATTGGATTTCTGTTAGAGGGTTTCGTTAAAACCCAAGGTGTCCAAGAAGAACTGGATCGATCACATCACCTGCGCCTCTATTCCCCTCACATGGTTACCAGAGCTTCCAGAATCTGGAAATATCAGAGTGATCATATTCGACATTGCAGCATGATTAGACGCTCATCCTCTTTTATATCAAATGGAGTTGATCATCATCCTCACAGGTCTCTTTCTAGAGAGCATAGTGGTCTTATGAGTTGGCCTGAGCACATTTTCGAAGTAAAGCAACAAAAGCAGAACCCCGAAGGAATTGACAGACAAATCAACAGCCTGTCAGCGAGGGCGATGCAGTTAAGCATTTACGGCGGCATGGTGAACGTGAATCCCCGGAAGCGCGCTAGAAGCTTTCCGAGAAGTGGCCCGATTAATCCATCACACACCGTGTCATATCCAAGCATGCGCCGTTCACAAAATGTATCATATCCGAGTGTTCCATCTCATCACAACCGTCCACTGGTTTCAGTCAGATCAGAAGGGGTAACAACTGTGAGAAAGGATTATGAAGTGAGAAAATTCACAGCCCAAACAAGTCTTCTAGGGCAGCTAAGTACAGAACCAAGTAAGAGCCATGTGGCAGACGATTCAAGTGATGAATCGGGTGGTGAGGATGATGTAATAGTGAGAATCGATTCACCAAGTAGGCTTTCTTTTTGCCAGGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009636 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019222 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031323 GO:0031967 GO:0031975 GO:0034220 GO:0035725 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1901700 GO:1902600 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger cNMP_binding

Protein Analysis

343

Amino Acids

39.17

Weight (kDa)

9.12

Isoelectric Point (pI)

61.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024242)

Species	Orthologous Gene IDs
malus_domestica	MD13G1014100.v1.1 MD16G1011200.v1.1
pyrus_communis	pycom13g01200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	399
Acc36I	ACCTGC	1 cut(s)	399
AccB7I	CCANNNNNTGG	1 cut(s)	435
AccII	CGCG	1 cut(s)	699
AciI	CCGC	1 cut(s)	669
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	2 cut(s)	306, 875
AdeI	CACNNNGTG	1 cut(s)	745
AfaI	GTAC	1 cut(s)	913
AfeI	AGCGCT	1 cut(s)	135
AfiI	CCNNNNNNNGG	4 cut(s)	412, 435, 719, 817
AgsI	TTSAA	2 cut(s)	305, 948
AjnI	CCWGG	1 cut(s)	1017
AjuI	GAANNNNNNNTTGG	4 cut(s)	879, 911, 991, 1023
AluBI	AGCT	3 cut(s)	425, 708, 907
AluI	AGCT	3 cut(s)	425, 708, 907
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	534
AlwI	GGATC	1 cut(s)	384
AlwNI	CAGNNNCTG	1 cut(s)	435
Aor51HI	AGCGCT	1 cut(s)	135
AoxI	GGCC	2 cut(s)	563, 721
ApeKI	GCWGC	3 cut(s)	88, 468, 904
ApoI	RAATTY	2 cut(s)	306, 875
AseI	ATTAAT	1 cut(s)	729
Asp700I	GAANNNNTTC	2 cut(s)	203, 991
AspLEI	GCGC	5 cut(s)	136, 396, 699, 701, 765
AspS9I	GGNCC	2 cut(s)	57, 722
AsuC2I	CCSGG	1 cut(s)	691
AsuHPI	GGTGA	4 cut(s)	380, 688, 977, 987
AsuII	TTCGAA	1 cut(s)	579
AvaII	GGWCC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	887
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	3 cut(s)	75, 480, 916
BccI	CCATC	2 cut(s)	742, 805
BceAI	ACGGC	2 cut(s)	682, 750
BcgI	CGANNNNNNTGC	2 cut(s)	631, 665
BciT130I	CCWGG	1 cut(s)	1019
BclI	TGATCA	3 cut(s)	165, 451, 511
BcnI	CCSGG	1 cut(s)	691
BcoDI	GTCTC	1 cut(s)	534
BfaI	CTAG	3 cut(s)	537, 702, 899
BfoI	RGCGCY	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	399
BisI	GCNGC	4 cut(s)	89, 469, 670, 905
BlsI	GCNGC	4 cut(s)	90, 470, 671, 906
Bme1390I	CCNGG	2 cut(s)	691, 1019
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	57, 722
BmiI	GGNNCC	1 cut(s)	1023
BmrFI	CCNGG	2 cut(s)	691, 1019
BmsI	GCATC	3 cut(s)	100, 264, 639
BpiI	GAAGAC	1 cut(s)	887
Bpu10I	CCTNAGC	1 cut(s)	567
Bpu14I	TTCGAA	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	691
Bsa29I	ATCGAT	2 cut(s)	379, 990
BsaBI	GATNNNNATC	2 cut(s)	39, 516
BsaI	GGTCTC	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	355, 689
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	4 cut(s)	412, 435, 719, 817
Bse1I	ACTGG	3 cut(s)	60, 378, 822
Bse3DI	GCAATG	2 cut(s)	240, 463
Bse8I	GATNNNNATC	2 cut(s)	39, 516
BseBI	CCWGG	1 cut(s)	1019
BseCI	ATCGAT	2 cut(s)	379, 990
BseDI	CCNNGG	2 cut(s)	355, 689
BseGI	GGATG	5 cut(s)	40, 91, 485, 517, 976
BseJI	GATNNNNATC	2 cut(s)	39, 516
BseLI	CCNNNNNNNGG	4 cut(s)	412, 435, 719, 817
BseMI	GCAATG	2 cut(s)	240, 463
BseMII	CTCAG	1 cut(s)	558
BseNI	ACTGG	3 cut(s)	60, 378, 822
BsePI	GCGCGC	1 cut(s)	697
BseXI	GCAGC	3 cut(s)	75, 480, 916
Bsh1236I	CGCG	1 cut(s)	699
BshFI	GGCC	2 cut(s)	565, 723
BshVI	ATCGAT	2 cut(s)	379, 990
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	2 cut(s)	141, 691
BslI	CCNNNNNNNGG	4 cut(s)	412, 435, 719, 817
BsmAI	GTCTC	1 cut(s)	534
BsnI	GGCC	2 cut(s)	565, 723
Bso31I	GGTCTC	1 cut(s)	534
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	6 cut(s)	165, 376, 380, 451, 511, 830
BspACI	CCGC	1 cut(s)	669
BspANI	GGCC	2 cut(s)	565, 723
BspCNI	CTCAG	1 cut(s)	559
BspDI	ATCGAT	2 cut(s)	379, 990
BspFNI	CGCG	1 cut(s)	699
BspLI	GGNNCC	1 cut(s)	1023
BspMI	ACCTGC	1 cut(s)	399
BspPI	GGATC	1 cut(s)	384
BspT104I	TTCGAA	1 cut(s)	579
BspTNI	GGTCTC	1 cut(s)	534
BsrDI	GCAATG	2 cut(s)	240, 463
BsrI	ACTGG	3 cut(s)	60, 378, 822
BssECI	CCNNGG	2 cut(s)	355, 689
BssHII	GCGCGC	1 cut(s)	697
BssMI	GATC	6 cut(s)	165, 376, 380, 451, 511, 830
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	1019
Bst4CI	ACNGT	4 cut(s)	317, 745, 812, 850
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	579
BstC8I	GCNNGC	2 cut(s)	699, 761
BstDEI	CTNAG	2 cut(s)	567, 908
BstEII	GGTNACC	1 cut(s)	415
BstF5I	GGATG	5 cut(s)	40, 91, 485, 517, 976
BstFNI	CGCG	1 cut(s)	699
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	5 cut(s)	136, 396, 699, 701, 765
BstKTI	GATC	6 cut(s)	168, 379, 383, 454, 514, 833
BstMAI	GTCTC	1 cut(s)	534
BstMBI	GATC	6 cut(s)	165, 376, 380, 451, 511, 830
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 595, 666, 705
BstNI	CCWGG	1 cut(s)	1019
BstNSI	RCATGY	1 cut(s)	763
BstPI	GGTNACC	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	689, 1017
BstUI	CGCG	1 cut(s)	699
BstV1I	GCAGC	3 cut(s)	75, 480, 916
BstV2I	GAAGAC	1 cut(s)	887
Bsu15I	ATCGAT	2 cut(s)	379, 990
BsuRI	GGCC	2 cut(s)	565, 723
BsuTUI	ATCGAT	2 cut(s)	379, 990
BtgZI	GCGATG	1 cut(s)	662
BtsCI	GGATG	5 cut(s)	40, 91, 485, 517, 976
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	4 cut(s)	59, 168, 276, 815
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	2 cut(s)	699, 761
CaiI	CAGNNNCTG	1 cut(s)	435
CfoI	GCGC	5 cut(s)	136, 396, 699, 701, 765
Cfr13I	GGNCC	2 cut(s)	57, 722
ClaI	ATCGAT	2 cut(s)	379, 990
CseI	GACGC	1 cut(s)	489
Csp6I	GTAC	1 cut(s)	912
CviAII	CATG	8 cut(s)	19, 31, 163, 412, 472, 673, 760, 932
CviQI	GTAC	1 cut(s)	912
DdeI	CTNAG	2 cut(s)	567, 908
DpnI	GATC	6 cut(s)	167, 378, 382, 453, 513, 832
DpnII	GATC	6 cut(s)	165, 376, 380, 451, 511, 830
DraIII	CACNNNGTG	1 cut(s)	745
Eco130I	CCWWGG	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	57
Eco47III	AGCGCT	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	415
EcoO65I	GGTNACC	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	1017
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	8 cut(s)	22, 34, 166, 415, 475, 676, 763, 935
FatI	CATG	8 cut(s)	18, 30, 162, 411, 471, 672, 759, 931
FbaI	TGATCA	3 cut(s)	165, 451, 511
Fnu4HI	GCNGC	4 cut(s)	89, 469, 670, 905
FokI	GGATG	5 cut(s)	47, 78, 472, 504, 983
Fsp4HI	GCNGC	4 cut(s)	89, 469, 670, 905
FspBI	CTAG	3 cut(s)	537, 702, 899
GlaI	GCGC	5 cut(s)	135, 395, 698, 700, 764
GluI	GCNGC	4 cut(s)	89, 469, 670, 905
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	565, 723
HapII	CCGG	2 cut(s)	141, 691
HgaI	GACGC	1 cut(s)	489
HhaI	GCGC	5 cut(s)	136, 396, 699, 701, 765
Hin1II	CATG	8 cut(s)	22, 34, 166, 415, 475, 676, 763, 935
Hin6I	GCGC	5 cut(s)	134, 394, 697, 699, 763
HinP1I	GCGC	5 cut(s)	134, 394, 697, 699, 763
HindIII	AAGCTT	1 cut(s)	706
HpaII	CCGG	2 cut(s)	141, 691
HphI	GGTGA	4 cut(s)	380, 688, 977, 987
Hpy166II	GTNNAC	4 cut(s)	57, 679, 770, 815
Hpy188I	TCNGA	6 cut(s)	178, 447, 714, 789, 830, 835
Hpy188III	TCNNGA	3 cut(s)	429, 436, 537
Hpy8I	GTNNAC	4 cut(s)	57, 679, 770, 815
HpyAV	CCTTC	3 cut(s)	218, 602, 830
HpyCH4III	ACNGT	4 cut(s)	317, 745, 812, 850
HpyCH4IV	ACGT	1 cut(s)	681
HpyCH4V	TGCA	5 cut(s)	91, 238, 260, 468, 652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 595, 666, 705
HpyF3I	CTNAG	2 cut(s)	567, 908
HpySE526I	ACGT	1 cut(s)	681
Hsp92II	CATG	8 cut(s)	22, 34, 166, 415, 475, 676, 763, 935
HspAI	GCGC	5 cut(s)	134, 394, 697, 699, 763
Ksp22I	TGATCA	3 cut(s)	165, 451, 511
Kzo9I	GATC	6 cut(s)	165, 376, 380, 451, 511, 830
LmnI	GCTCC	1 cut(s)	1027
Lsp1109I	GCAGC	3 cut(s)	75, 480, 916
LweI	GCATC	3 cut(s)	100, 264, 639
MaeI	CTAG	3 cut(s)	537, 702, 899
MaeII	ACGT	1 cut(s)	681
MaeIII	GTNAC	3 cut(s)	158, 415, 841
MalI	GATC	6 cut(s)	167, 378, 382, 453, 513, 832
MboI	GATC	6 cut(s)	165, 376, 380, 451, 511, 830
MboII	GAAGA	2 cut(s)	380, 887
MhlI	GDGCHC	1 cut(s)	573
MluCI	AATT	3 cut(s)	306, 612, 875
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	8 cut(s)	26, 331, 407, 417, 499, 531, 636, 961
MroXI	GAANNNNTTC	2 cut(s)	203, 991
MseI	TTAA	3 cut(s)	348, 656, 729
MspI	CCGG	2 cut(s)	141, 691
MspR9I	CCNGG	2 cut(s)	691, 1019
MvaI	CCWGG	1 cut(s)	1019
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	4 cut(s)	88, 595, 666, 705
NciI	CCSGG	1 cut(s)	691
NdeII	GATC	6 cut(s)	165, 376, 380, 451, 511, 830
NlaIII	CATG	8 cut(s)	22, 34, 166, 415, 475, 676, 763, 935
NlaIV	GGNNCC	1 cut(s)	1023
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	763
NspV	TTCGAA	1 cut(s)	579
PaeI	GCATGC	1 cut(s)	763
PaqCI	CACCTGC	1 cut(s)	399
PauI	GCGCGC	1 cut(s)	697
PdmI	GAANNNNTTC	2 cut(s)	203, 991
PflMI	CCANNNNNTGG	1 cut(s)	435
PkrI	GCNGC	4 cut(s)	90, 470, 671, 906
PshBI	ATTAAT	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	1017
PspEI	GGTNACC	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	1017
PspN4I	GGNNCC	1 cut(s)	1023
PspPI	GGNCC	2 cut(s)	57, 722
PstNI	CAGNNNCTG	1 cut(s)	435
PteI	GCGCGC	1 cut(s)	697
RsaI	GTAC	1 cut(s)	913
RsaNI	GTAC	1 cut(s)	912
SaqAI	TTAA	3 cut(s)	348, 656, 729
SatI	GCNGC	4 cut(s)	89, 469, 670, 905
Sau3AI	GATC	6 cut(s)	165, 376, 380, 451, 511, 830
Sau96I	GGNCC	2 cut(s)	57, 722
ScrFI	CCNGG	2 cut(s)	691, 1019
SduI	GDGCHC	1 cut(s)	573
SetI	ASST	8 cut(s)	269, 361, 393, 427, 530, 684, 710, 909
SfaNI	GCATC	3 cut(s)	100, 264, 639
SfuI	TTCGAA	1 cut(s)	579
SinI	GGWCC	1 cut(s)	57
SphI	GCATGC	1 cut(s)	763
Sse9I	AATT	3 cut(s)	306, 612, 875
SsiI	CCGC	1 cut(s)	669
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	3 cut(s)	537, 702, 899
StyD4I	CCNGG	2 cut(s)	689, 1017
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	4 cut(s)	317, 745, 812, 850
TaiI	ACGT	1 cut(s)	684
TaqI	TCGA	4 cut(s)	379, 460, 579, 990
TasI	AATT	3 cut(s)	306, 612, 875
TatI	WGTACW	1 cut(s)	911
TauI	GCSGC	1 cut(s)	672
Tru1I	TTAA	3 cut(s)	348, 656, 729
Tru9I	TTAA	3 cut(s)	348, 656, 729
TscAI	CASTG	4 cut(s)	59, 175, 276, 822
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	88, 468, 904
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	3 cut(s)	144, 879, 969
TspRI	CASTG	4 cut(s)	59, 175, 276, 822
Van91I	CCANNNNNTGG	1 cut(s)	435
VpaK11BI	GGWCC	1 cut(s)	57
VspI	ATTAAT	1 cut(s)	729
XapI	RAATTY	2 cut(s)	306, 875
XbaI	TCTAGA	1 cut(s)	536
XceI	RCATGY	1 cut(s)	763
XmnI	GAANNNNTTC	2 cut(s)	203, 991
XspI	CTAG	3 cut(s)	537, 702, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.