Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0024248

Physical Location & Seq

Genomic Coordinates Forward (+)

1623205 .. 1624634

Gene Structure 1430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1022600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGCCCGTTCTGATTAAGCATGCCAGAGATGATTTAAAACATTTTATGGTGGACAATCAATTGGAAACAACTTCAAATGGGAAGTTTTCGCAAGGGACGCATGCAAGTGGGGTTATGCCTGATGCTGATGGAGAATGCTTTTTGGAATTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006810 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016604 GO:0016922 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030331 GO:0030518 GO:0030520 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031594 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033993 GO:0035035 GO:0035257 GO:0035258 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045202 GO:0045595 GO:0045661 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048545 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051427 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0099053 GO:0140110 GO:1901998 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2HC5

Protein Analysis

52

Amino Acids

5.7

Weight (kDa)

5.28

Isoelectric Point (pI)

22.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024248)

Species	Orthologous Gene IDs
malus_domestica	MD06G1159900.v1.1 MD13G1022600.v1.1
pyrus_communis	pycom14g05550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	146
BccI	CCATC	1 cut(s)	122
BmsI	GCATC	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	21, 102
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNSI	RCATGY	2 cut(s)	23, 104
Cac8I	GCNNGC	2 cut(s)	21, 102
CseI	GACGC	1 cut(s)	106
CviAII	CATG	2 cut(s)	20, 101
DraI	TTTAAA	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	146
FaeI	CATG	2 cut(s)	23, 104
FaiI	YATR	4 cut(s)	21, 47, 102, 116
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	19, 100
HgaI	GACGC	1 cut(s)	106
Hin1II	CATG	2 cut(s)	23, 104
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	12
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
Hsp92II	CATG	2 cut(s)	23, 104
LpnPI	CCDG	2 cut(s)	37, 132
LweI	GCATC	1 cut(s)	112
MfeI	CAATTG	1 cut(s)	59
MluCI	AATT	2 cut(s)	59, 146
MseI	TTAA	3 cut(s)	15, 35, 154
MslI	CAYNNNNRTG	1 cut(s)	105
MunI	CAATTG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	23, 104
NspI	RCATGY	2 cut(s)	23, 104
PaeI	GCATGC	2 cut(s)	23, 104
PctI	GAATGC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	15, 35, 154
SfaNI	GCATC	1 cut(s)	112
SgeI	CNNG	7 cut(s)	17, 32, 36, 104, 113, 117, 131
SmiMI	CAYNNNNRTG	1 cut(s)	105
SphI	GCATGC	2 cut(s)	23, 104
Sse9I	AATT	2 cut(s)	59, 146
TasI	AATT	2 cut(s)	59, 146
Tru1I	TTAA	3 cut(s)	15, 35, 154
Tru9I	TTAA	3 cut(s)	15, 35, 154
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	2 cut(s)	23, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.