Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0024248

Physical Location & Seq

Genomic Coordinates Reverse (-)

5366859 .. 5367452

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g05550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCAAATTCTATTGCCAGGGCTACTTACTTGTATTGCCAGGGAGGAGGCTCCAACGCTGGAGTTGCTCTTAGCTGCAAGAAGGCTGGGTCTCGAAAGAGGTCGTTTTGGTTCCAGGTGCTTGAGTTCAATCCCGTTCTGTTTGCAGCATGCCAGCGATGATTTAAAACATTTGACGGTGGACAATCAATTGGAAATAGATTCAAATGGGAAGTTTTCGCAAGGGACGCATGTAAGTGGGGTTATGCCTGATGCTGATGGAGAATGCTTTTTGGAATTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006810 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016604 GO:0016922 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030331 GO:0030518 GO:0030520 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031594 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033993 GO:0035035 GO:0035257 GO:0035258 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045202 GO:0045595 GO:0045661 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048545 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051427 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0099053 GO:0140110 GO:1901998 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2HC5

Protein Analysis

95

Amino Acids

10.35

Weight (kDa)

5.17

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024248)

Species	Orthologous Gene IDs
malus_domestica	MD06G1159900.v1.1 MD13G1022600.v1.1
pyrus_communis	pycom14g05550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	6, 275
AgsI	TTSAA	2 cut(s)	129, 204
AjnI	CCWGG	3 cut(s)	16, 38, 113
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	74, 145
ApoI	RAATTY	2 cut(s)	6, 275
BbvI	GCAGC	2 cut(s)	61, 157
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	3 cut(s)	18, 40, 115
BcoDI	GTCTC	1 cut(s)	95
BisI	GCNGC	2 cut(s)	75, 146
BlsI	GCNGC	2 cut(s)	76, 147
Bme1390I	CCNGG	3 cut(s)	18, 40, 115
BmiI	GGNNCC	2 cut(s)	51, 112
BmrFI	CCNGG	3 cut(s)	18, 40, 115
BmsI	GCATC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	142
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	17, 39
BseBI	CCWGG	3 cut(s)	18, 40, 115
BseDI	CCNNGG	2 cut(s)	17, 39
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	61, 157
BseYI	CCCAGC	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	51, 112
BspTNI	GGTCTC	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	17, 39
Bst2UI	CCWGG	3 cut(s)	18, 40, 115
Bst4CI	ACNGT	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	150, 154
BstDEI	CTNAG	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 226
BstNI	CCWGG	3 cut(s)	18, 40, 115
BstNSI	RCATGY	2 cut(s)	152, 233
BstSCI	CCNGG	3 cut(s)	16, 38, 113
BstV1I	GCAGC	2 cut(s)	61, 157
BtgZI	GCGATG	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	150, 154
CseI	GACGC	1 cut(s)	235
CviAII	CATG	2 cut(s)	149, 230
CviJI	RGCY	4 cut(s)	22, 50, 74, 85
CviKI_1	RGCY	4 cut(s)	22, 50, 74, 85
DdeI	CTNAG	1 cut(s)	70
DraI	TTTAAA	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	275
EcoRII	CCWGG	3 cut(s)	16, 38, 113
FaeI	CATG	2 cut(s)	152, 233
FaiI	YATR	3 cut(s)	150, 231, 245
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	148, 229
Fnu4HI	GCNGC	2 cut(s)	75, 146
Fsp4HI	GCNGC	2 cut(s)	75, 146
GluI	GCNGC	2 cut(s)	75, 146
GsaI	CCCAGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	235
Hin1II	CATG	2 cut(s)	152, 233
HinfI	GANTC	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	3 cut(s)	4, 77, 145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 226
HpyF3I	CTNAG	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	152, 233
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	2 cut(s)	61, 157
LweI	GCATC	1 cut(s)	241
MfeI	CAATTG	1 cut(s)	188
MluCI	AATT	3 cut(s)	6, 188, 275
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	3 cut(s)	37, 40, 92
MseI	TTAA	2 cut(s)	164, 283
MslI	CAYNNNNRTG	1 cut(s)	234
MspR9I	CCNGG	3 cut(s)	18, 40, 115
MunI	CAATTG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	3 cut(s)	18, 40, 115
MwoI	GCNNNNNNNGC	2 cut(s)	64, 226
NlaIII	CATG	2 cut(s)	152, 233
NlaIV	GGNNCC	2 cut(s)	51, 112
NspI	RCATGY	2 cut(s)	152, 233
PaeI	GCATGC	1 cut(s)	152
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	76, 147
Psp6I	CCWGG	3 cut(s)	16, 38, 113
PspFI	CCCAGC	1 cut(s)	85
PspGI	CCWGG	3 cut(s)	16, 38, 113
PspN4I	GGNNCC	2 cut(s)	51, 112
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	164, 283
SatI	GCNGC	2 cut(s)	75, 146
ScrFI	CCNGG	3 cut(s)	18, 40, 115
SetI	ASST	3 cut(s)	76, 103, 119
SfaNI	GCATC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
SphI	GCATGC	1 cut(s)	152
Sse9I	AATT	3 cut(s)	6, 188, 275
StyD4I	CCNGG	3 cut(s)	16, 38, 113
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	93
TasI	AATT	3 cut(s)	6, 188, 275
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	164, 283
Tru9I	TTAA	2 cut(s)	164, 283
TseI	GCWGC	2 cut(s)	74, 145
XapI	RAATTY	2 cut(s)	6, 275
XceI	RCATGY	2 cut(s)	152, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.