MD13G1054500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0018093
Physical Location & Seq
Forward (+)
3828054 .. 3828395
342 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1054500.v1.1.491

Sequence Viewer

Length: 252 bp
ATGGAGAAGAAACCATCTTTCAAGTTTGCTTCTTTGGTCCTTCTTTTTGCCATAATTGCTTGCATGGCAATGGGGAACGTGCCGGGAGCTGAAGCAAGGGGAAAACTCCGGTGTCCGGGGATGATAGACTGCAGCAGTGTGTGCGAAGGATTTCCCTGGCGCTGCGTTAACGGCGAATGCATATGTGATGGTGGCAACGCTCCTCCCCAACTCCAACATGAAGCCAATTTTCTACCAAACCAATTGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.93

Weight (kDa)

6.52

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018093)

Species Orthologous Gene IDs
malus_domestica MD13G1054500.v1.1 MD16G1053300.v1.1
prunus_persica Prupe.1G297400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0437001
rosa_laevigata RLG00000006479
rosa_roxburghii Rroxscaffold_5G00378080
rosa_rugosa Rorug04G0297700
rosa_samantha Rh4BG361300 Rh4CG375500 Rh4DG355300
rosa_wichuraiana Rw4G030820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 132, 162
Asp700I GAANNNNTTC 1 cut(s) 150
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 37
AsuC2I CCSGG 2 cut(s) 84, 117
AvaII GGWCC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 144, 149
BccI CCATC 2 cut(s) 22, 182
BceAI ACGGC 2 cut(s) 187, 232
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 2 cut(s) 84, 117
BfmI CTRYAG 1 cut(s) 130
BfoI RGCGCY 1 cut(s) 163
BisI GCNGC 2 cut(s) 133, 163
BlsI GCNGC 2 cut(s) 134, 164
Bme1390I CCNGG 3 cut(s) 84, 117, 157
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmrFI CCNGG 3 cut(s) 84, 117, 157
BpuMI CCSGG 2 cut(s) 84, 117
BsaJI CCNNGG 2 cut(s) 116, 155
BsaWI WCCGGW 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 116, 155
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMI GCAATG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 144, 149
BsiSI CCGG 3 cut(s) 83, 109, 116
BslI CCNNNNNNNGG 1 cut(s) 115
BsmI GAATGC 1 cut(s) 182
BspMAI CTGCAG 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 75
BssECI CCNNGG 2 cut(s) 116, 155
Bst2UI CCWGG 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 61
BstF5I GGATG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstMWI GCNNNNNNNGC 4 cut(s) 56, 65, 141, 171
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 3 cut(s) 82, 115, 155
BstSFI CTRYAG 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 144, 149
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 37
CviAII CATG 2 cut(s) 64, 218
CviJI RGCY 2 cut(s) 89, 224
CviKI_1 RGCY 2 cut(s) 89, 224
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 182
FaeI CATG 2 cut(s) 67, 221
FaiI YATR 5 cut(s) 53, 65, 182, 184, 219
FatI CATG 2 cut(s) 63, 217
FauNDI CATATG 1 cut(s) 182
Fnu4HI GCNGC 2 cut(s) 133, 163
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 2 cut(s) 133, 163
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 133, 163
HaeII RGCGCY 1 cut(s) 163
HapII CCGG 3 cut(s) 83, 109, 116
HhaI GCGC 1 cut(s) 162
Hin1II CATG 2 cut(s) 67, 221
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 3 cut(s) 83, 109, 116
Hpy166II GTNNAC 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 50, 140
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 63, 132, 180
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 65, 141, 171
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 67, 221
HspAI GCGC 1 cut(s) 160
KspAI GTTAAC 1 cut(s) 169
LmnI GCTCC 2 cut(s) 86, 205
LpnPI CCDG 5 cut(s) 96, 122, 129, 142, 169
Lsp1109I GCAGC 2 cut(s) 144, 149
MaeII ACGT 1 cut(s) 78
MboII GAAGA 1 cut(s) 19
MfeI CAATTG 1 cut(s) 242
MluCI AATT 3 cut(s) 54, 226, 242
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 1 cut(s) 213
Mph1103I ATGCAT 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 3 cut(s) 83, 109, 116
MspR9I CCNGG 3 cut(s) 84, 117, 157
MunI CAATTG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 182
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 4 cut(s) 56, 65, 141, 171
NciI CCSGG 2 cut(s) 84, 117
NdeI CATATG 1 cut(s) 182
NlaIII CATG 2 cut(s) 67, 221
NsiI ATGCAT 1 cut(s) 182
PctI GAATGC 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 150
PkrI GCNGC 2 cut(s) 134, 164
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspPI GGNCC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 133, 163
Sau96I GGNCC 1 cut(s) 37
ScrFI CCNGG 3 cut(s) 84, 117, 157
SetI ASST 2 cut(s) 81, 91
SfcI CTRYAG 1 cut(s) 130
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 3 cut(s) 54, 226, 242
StyD4I CCNGG 3 cut(s) 82, 115, 155
TaiI ACGT 1 cut(s) 81
TasI AATT 3 cut(s) 54, 226, 242
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 1 cut(s) 142
TseI GCWGC 2 cut(s) 132, 162
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.