RLG00000006479

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018093
Physical Location & Seq
Reverse (-)
7544521 .. 7546673
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006479

Sequence Viewer

Length: 636 bp
ATGGTCCGCCGGAATTGTGAGATCGGAGAGTTGTGGTTCACTGTTGCCGTTGACCTCGTCTTCGATTCCAAGCATAGCCGCCATGCGAAGAAGAACTCCCAAGCTCCGTCGGTGATGCCCGGCCTCTGCAATGACATTCCGGCCAAGCTCCACCATAAGGTCTACAGATTCTCAATGTCGCCGAAATCTCCGGCGAGCTCCCTCCGAGTCTGTTGTACCTCGATCTCTCTTCGAACACTTTCTCCGTGCTTTTGGTCAAGGCAAACCCCACCTTCCTCGAGCATTCCTTCGTCTGAAACTCTGTCAGAGTCGTCGGCGATGTTCTCATCGAGCAGTAGCCCACCAAGTCCGACGCTGGCAGAAAATCCAGAGATTCATAGCCATCAGAAAACCACCAGAAACTCCATGGAGAAAAAACCTTCTGTGAAGTTAGCTTCATTGCTCCTTCTGTTGGCTACAATGACTTGTATGGCATTGTGGAGGATGCCAGTGGCTGAAGCAAGGGGGGAGTTACGGTGTCCTCGTATGATAGACTGCAGTTCTGTGTGTCAAGGTTATCCCTGGCGCTGCGTCGATGGCAAATGCATATGCGACAAAAATCCTCCCCAGGCCAAGGTGAAAGCAACTATGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.33

Weight (kDa)

9.24

Isoelectric Point (pI)

66.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018093)

Species Orthologous Gene IDs
malus_domestica MD13G1054500.v1.1 MD16G1053300.v1.1
prunus_persica Prupe.1G297400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0437001
rosa_laevigata RLG00000006479
rosa_roxburghii Rroxscaffold_5G00378080
rosa_rugosa Rorug04G0297700
rosa_samantha Rh4BG361300 Rh4CG375500 Rh4DG355300
rosa_wichuraiana Rw4G030820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 162
AciI CCGC 2 cut(s) 7, 79
AcoI YGGCCR 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 516
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 3 cut(s) 157, 451, 613
AjnI CCWGG 2 cut(s) 560, 606
AloI GAACNNNNNNTCC 2 cut(s) 226, 258
AluBI AGCT 4 cut(s) 104, 148, 198, 434
AluI AGCT 4 cut(s) 104, 148, 198, 434
Alw21I GWGCWC 1 cut(s) 200
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 277
AoxI GGCC 3 cut(s) 121, 141, 609
ApeKI GCWGC 1 cut(s) 567
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
Asp700I GAANNNNTTC 1 cut(s) 238
AspLEI GCGC 1 cut(s) 567
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 124, 628
AsuII TTCGAA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 277
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 554
BccI CCATC 2 cut(s) 390, 569
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 562, 608
BcnI CCSGG 1 cut(s) 120
BfmI CTRYAG 2 cut(s) 163, 535
BfoI RGCGCY 1 cut(s) 568
BisI GCNGC 2 cut(s) 79, 568
BlsI GCNGC 2 cut(s) 80, 569
Bme1390I CCNGG 3 cut(s) 120, 562, 608
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 3 cut(s) 120, 562, 608
BmsI GCATC 2 cut(s) 105, 474
BpiI GAAGAC 1 cut(s) 52
Bpu14I TTCGAA 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 120
BsaJI CCNNGG 4 cut(s) 405, 560, 606, 612
BsaXI ACNNNNNCTCC 4 cut(s) 226, 256, 500, 530
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 451, 613
Bse1I ACTGG 1 cut(s) 488
Bse3DI GCAATG 2 cut(s) 136, 437
BseBI CCWGG 2 cut(s) 562, 608
BseDI CCNNGG 4 cut(s) 405, 560, 606, 612
BseGI GGATG 1 cut(s) 489
BseLI CCNNNNNNNGG 3 cut(s) 157, 451, 613
BseMI GCAATG 2 cut(s) 136, 437
BseNI ACTGG 1 cut(s) 488
BseXI GCAGC 1 cut(s) 554
BshFI GGCC 3 cut(s) 123, 143, 611
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 277
BsiSI CCGG 4 cut(s) 10, 120, 140, 191
BslI CCNNNNNNNGG 3 cut(s) 157, 451, 613
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 3 cut(s) 123, 143, 611
BsoBI CYCGRG 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 2 cut(s) 21, 222
Bsp19I CCATGG 1 cut(s) 405
BspACI CCGC 2 cut(s) 7, 79
BspANI GGCC 3 cut(s) 123, 143, 611
BspMAI CTGCAG 1 cut(s) 539
BspT104I TTCGAA 1 cut(s) 232
BsrDI GCAATG 2 cut(s) 136, 437
BsrI ACTGG 1 cut(s) 488
BssECI CCNNGG 4 cut(s) 405, 560, 606, 612
BssMI GATC 2 cut(s) 21, 222
BssT1I CCWWGG 2 cut(s) 405, 612
Bst2UI CCWGG 2 cut(s) 562, 608
Bst4CI ACNGT 2 cut(s) 43, 516
Bst6I CTCTTC 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 196, 357
BstDSI CCRYGG 1 cut(s) 405
BstF5I GGATG 1 cut(s) 489
BstH2I RGCGCY 1 cut(s) 568
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 2 cut(s) 24, 225
BstMBI GATC 2 cut(s) 21, 222
BstMWI GCNNNNNNNGC 1 cut(s) 576
BstNI CCWGG 2 cut(s) 562, 608
BstSCI CCNGG 3 cut(s) 118, 560, 606
BstSFI CTRYAG 2 cut(s) 163, 535
BstV1I GCAGC 1 cut(s) 554
BstV2I GAAGAC 1 cut(s) 52
BsuRI GGCC 3 cut(s) 123, 143, 611
BtgI CCRYGG 1 cut(s) 405
BtgZI GCGATG 1 cut(s) 332
BtsCI GGATG 1 cut(s) 489
BtsIMutI CAGTG 2 cut(s) 39, 495
Cac8I GCNNGC 2 cut(s) 196, 357
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 1 cut(s) 567
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 2 cut(s) 361, 559
Csp6I GTAC 1 cut(s) 216
CviAII CATG 2 cut(s) 83, 406
CviQI GTAC 1 cut(s) 216
DpnI GATC 2 cut(s) 23, 224
DpnII GATC 2 cut(s) 21, 222
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 198
Eco130I CCWWGG 2 cut(s) 405, 612
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 198
EcoRII CCWGG 2 cut(s) 560, 606
EcoT14I CCWWGG 2 cut(s) 405, 612
EcoT22I ATGCAT 1 cut(s) 587
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 2 cut(s) 405, 612
FaeI CATG 2 cut(s) 86, 409
FatI CATG 2 cut(s) 82, 405
FauNDI CATATG 1 cut(s) 587
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 79, 568
FokI GGATG 1 cut(s) 496
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 79, 568
GlaI GCGC 1 cut(s) 566
GluI GCNGC 2 cut(s) 79, 568
HaeII RGCGCY 1 cut(s) 568
HaeIII GGCC 3 cut(s) 123, 143, 611
HapII CCGG 4 cut(s) 10, 120, 140, 191
HgaI GACGC 2 cut(s) 361, 559
HhaI GCGC 1 cut(s) 567
Hin1II CATG 2 cut(s) 86, 409
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 5 cut(s) 65, 168, 207, 308, 373
HpaII CCGG 4 cut(s) 10, 120, 140, 191
HphI GGTGA 2 cut(s) 124, 628
Hpy166II GTNNAC 3 cut(s) 39, 52, 163
Hpy188I TCNGA 6 cut(s) 26, 206, 295, 307, 351, 387
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 3 cut(s) 39, 52, 163
Hpy99I CGWCG 4 cut(s) 112, 316, 355, 575
HpyAV CCTTC 4 cut(s) 282, 297, 429, 455
HpyCH4III ACNGT 2 cut(s) 43, 516
HpyCH4V TGCA 3 cut(s) 129, 537, 585
HpyF10VI GCNNNNNNNGC 1 cut(s) 576
Hsp92II CATG 2 cut(s) 86, 409
HspAI GCGC 1 cut(s) 565
Kzo9I GATC 2 cut(s) 21, 222
LmnI GCTCC 4 cut(s) 109, 153, 203, 447
Lsp1109I GCAGC 1 cut(s) 554
LweI GCATC 2 cut(s) 105, 474
MaeIII GTNAC 1 cut(s) 510
MalI GATC 2 cut(s) 23, 224
MboI GATC 2 cut(s) 21, 222
MboII GAAGA 4 cut(s) 52, 100, 103, 221
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 1 cut(s) 13
MlyI GAGTC 2 cut(s) 216, 317
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 8 cut(s) 65, 134, 212, 229, 286, 474, 531, 612
Mph1103I ATGCAT 1 cut(s) 587
MroXI GAANNNNTTC 1 cut(s) 238
MspI CCGG 4 cut(s) 10, 120, 140, 191
MspR9I CCNGG 3 cut(s) 120, 562, 608
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 2 cut(s) 562, 608
MwoI GCNNNNNNNGC 1 cut(s) 576
NciI CCSGG 1 cut(s) 120
NcoI CCATGG 1 cut(s) 405
NdeI CATATG 1 cut(s) 587
NdeII GATC 2 cut(s) 21, 222
NlaIII CATG 2 cut(s) 86, 409
NsiI ATGCAT 1 cut(s) 587
NspV TTCGAA 1 cut(s) 232
PaeR7I CTCGAG 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 520
PctI GAATGC 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 238
PfeI GAWTC 3 cut(s) 65, 168, 373
PflFI GACNNNGTC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 80, 569
PleI GAGTC 2 cut(s) 215, 316
PpsI GAGTC 2 cut(s) 215, 316
Psp124BI GAGCTC 1 cut(s) 200
Psp6I CCWGG 2 cut(s) 560, 606
PspGI CCWGG 2 cut(s) 560, 606
PspPI GGNCC 1 cut(s) 4
PspXI VCTCGAGB 1 cut(s) 277
PstI CTGCAG 1 cut(s) 539
PstNI CAGNNNCTG 1 cut(s) 494
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SacI GAGCTC 1 cut(s) 200
SatI GCNGC 2 cut(s) 79, 568
Sau3AI GATC 2 cut(s) 21, 222
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 216, 317
ScrFI CCNGG 3 cut(s) 120, 562, 608
SduI GDGCHC 1 cut(s) 200
SfaNI GCATC 2 cut(s) 105, 474
SfcI CTRYAG 2 cut(s) 163, 535
Sfr274I CTCGAG 1 cut(s) 277
SfuI TTCGAA 1 cut(s) 232
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 1 cut(s) 13
SsiI CCGC 2 cut(s) 7, 79
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 3 cut(s) 118, 560, 606
StyI CCWWGG 2 cut(s) 405, 612
TaaI ACNGT 2 cut(s) 43, 516
TaqI TCGA 6 cut(s) 63, 221, 232, 278, 329, 573
TasI AATT 1 cut(s) 13
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 3 cut(s) 65, 168, 373
TscAI CASTG 2 cut(s) 46, 495
TseI GCWGC 1 cut(s) 567
TspDTI ATGAA 2 cut(s) 365, 426
TspGWI ACGGA 2 cut(s) 96, 234
TspRI CASTG 2 cut(s) 46, 495
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 4
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.