MD16G1053300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0018093
Physical Location & Seq
Forward (+)
3786649 .. 3787082
434 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1053300.v1.1.491

Sequence Viewer

Length: 339 bp
ATGAAAAATGAACTACTTTGCATACTGAACCAAACCTGCAAGTCTACAAGTCCCCAACCACAGGTCCACAACACTATCAAGAACAATATGGAGAGGAAACCATCTTTCAAGTTTGCTTCTTTGGTCCTTCTTTTGGCTATAATTGCTTGCATGGCAATGTGGAACATGCCGGGAGCTGAAGCAAGGGGAAAACTCCGGTGTCCTGGGATGATAGACTGCAGCAGTGTGTGCGAAGGATTTCCCTGGCGCTGCGTTAATGGCGAATGCATATGTGATGGTGGCAACCTTCCTCCCCAACTCCAAGTTGAAGCTAATTTTCAACCAGACCAGTTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.38

Weight (kDa)

7.48

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018093)

Species Orthologous Gene IDs
malus_domestica MD13G1054500.v1.1 MD16G1053300.v1.1
prunus_persica Prupe.1G297400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0437001
rosa_laevigata RLG00000006479
rosa_roxburghii Rroxscaffold_5G00378080
rosa_rugosa Rorug04G0297700
rosa_samantha Rh4BG361300 Rh4CG375500 Rh4DG355300
rosa_wichuraiana Rw4G030820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 198
AfiI CCNNNNNNNGG 2 cut(s) 61, 133
AgsI TTSAA 3 cut(s) 109, 308, 320
AjnI CCWGG 2 cut(s) 202, 242
AluBI AGCT 2 cut(s) 176, 311
AluI AGCT 2 cut(s) 176, 311
ApeKI GCWGC 2 cut(s) 219, 249
Asp700I GAANNNNTTC 1 cut(s) 237
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 64, 124
AsuC2I CCSGG 1 cut(s) 171
AvaII GGWCC 2 cut(s) 64, 124
BbvI GCAGC 2 cut(s) 231, 236
BccI CCATC 2 cut(s) 109, 269
BciT130I CCWGG 2 cut(s) 204, 244
BcnI CCSGG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 217
BfoI RGCGCY 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 44
BisI GCNGC 2 cut(s) 220, 250
BlsI GCNGC 2 cut(s) 221, 251
Bme1390I CCNGG 3 cut(s) 171, 204, 244
Bme18I GGWCC 2 cut(s) 64, 124
BmgT120I GGNCC 2 cut(s) 64, 124
BmrFI CCNGG 3 cut(s) 171, 204, 244
BpuMI CCSGG 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 203, 242
BsaWI WCCGGW 1 cut(s) 195
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 133
Bse1I ACTGG 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 2 cut(s) 204, 244
BseDI CCNNGG 2 cut(s) 203, 242
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 61, 133
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 328
BseXI GCAGC 2 cut(s) 231, 236
BsiSI CCGG 2 cut(s) 170, 196
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 61, 133
BsmFI GGGAC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 269
BspMAI CTGCAG 1 cut(s) 221
BspMI ACCTGC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 2 cut(s) 203, 242
Bst2UI CCWGG 2 cut(s) 204, 244
BstAPI GCANNNNNTGC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 148
BstF5I GGATG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 1 cut(s) 249
BstMWI GCNNNNNNNGC 4 cut(s) 143, 152, 228, 258
BstNI CCWGG 2 cut(s) 204, 244
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 3 cut(s) 169, 202, 242
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 231, 236
BtsCI GGATG 1 cut(s) 213
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 64, 124
CviAII CATG 3 cut(s) 151, 166, 336
CviJI RGCY 3 cut(s) 137, 176, 311
CviKI_1 RGCY 3 cut(s) 137, 176, 311
Eco47I GGWCC 2 cut(s) 64, 124
Eco57I CTGAAG 1 cut(s) 198
EcoRII CCWGG 2 cut(s) 202, 242
EcoT22I ATGCAT 1 cut(s) 269
FaeI CATG 3 cut(s) 154, 169, 339
FaiI YATR 8 cut(s) 23, 89, 140, 152, 167, 269, 271, 337
FaqI GGGAC 1 cut(s) 36
FatI CATG 3 cut(s) 150, 165, 335
FauNDI CATATG 1 cut(s) 269
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 220, 250
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 2 cut(s) 220, 250
GlaI GCGC 1 cut(s) 248
GluI GCNGC 2 cut(s) 220, 250
HaeII RGCGCY 1 cut(s) 250
HapII CCGG 2 cut(s) 170, 196
HhaI GCGC 1 cut(s) 249
Hin1II CATG 3 cut(s) 154, 169, 339
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HpaII CCGG 2 cut(s) 170, 196
Hpy166II GTNNAC 2 cut(s) 45, 67
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 2 cut(s) 45, 67
HpyAV CCTTC 3 cut(s) 137, 227, 296
HpyCH4V TGCA 5 cut(s) 21, 39, 150, 219, 267
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 152, 228, 258
Hsp92II CATG 3 cut(s) 154, 169, 339
HspAI GCGC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 8 cut(s) 47, 49, 183, 189, 209, 216, 229, 256
Lsp1109I GCAGC 2 cut(s) 231, 236
MluCI AATT 2 cut(s) 141, 313
MnlI CCTC 2 cut(s) 87, 300
Mph1103I ATGCAT 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 2 cut(s) 170, 196
MspR9I CCNGG 3 cut(s) 171, 204, 244
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 2 cut(s) 204, 244
MwoI GCNNNNNNNGC 4 cut(s) 143, 152, 228, 258
NciI CCSGG 1 cut(s) 171
NdeI CATATG 1 cut(s) 269
NlaIII CATG 3 cut(s) 154, 169, 339
NsiI ATGCAT 1 cut(s) 269
NspI RCATGY 1 cut(s) 169
PctI GAATGC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 237
PkrI GCNGC 2 cut(s) 221, 251
Psp6I CCWGG 2 cut(s) 202, 242
PspGI CCWGG 2 cut(s) 202, 242
PspPI GGNCC 2 cut(s) 64, 124
PstI CTGCAG 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 2 cut(s) 220, 250
Sau96I GGNCC 2 cut(s) 64, 124
ScrFI CCNGG 3 cut(s) 171, 204, 244
SetI ASST 5 cut(s) 38, 66, 178, 288, 313
SfcI CTRYAG 1 cut(s) 217
SinI GGWCC 2 cut(s) 64, 124
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 2 cut(s) 141, 313
StyD4I CCNGG 3 cut(s) 169, 202, 242
TasI AATT 2 cut(s) 141, 313
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 229
TseI GCWGC 2 cut(s) 219, 249
TspDTI ATGAA 2 cut(s) 17, 24
TspRI CASTG 1 cut(s) 229
VpaK11BI GGWCC 2 cut(s) 64, 124
XceI RCATGY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 237
Zsp2I ATGCAT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.