Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0024243

Physical Location & Seq

Genomic Coordinates Forward (+)

11419638 .. 11421836

Gene Structure 2199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1146400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGATTGCAGTGTTGTACTATTTTGACCACAGTGTGGCTTCCCAACTTGCTCAGCAGAAGGAATTCAATTTGAGAAAACCACCTTCATTCCATTACGATCTACTTCTCTTAGGGTTCATGGTCATAATATGTGGTCTCTTAGGCATTCCTCCATCCAATGGTGTCATACCACAATCTCCAATGCATACAAAAAGTTTGGCCACACTGAAGCACCAGTTACTTCGCAATCGACTTGTAGCGACAGCAAGGAGATGTATTAGAAACAATGCCAGCTTGGAACAAGTATATGGAAGCATGCAAGAATCATATCAACAGATGCAAACCCCACTAGCATACCAGGAACCTTCAGCTCGGGGATTAAATGACTTGAAAGATTCAACTGTTCAAATGGCTTCAAGCATGGGTGACATAGATGCCCCAGTTGATGAGACAGTGTTTGATGTTGAGAAGGAGATCGATGATTTATTGCCTGTTGAGGTGAAAGAGCAGCGGCTTAGCAACTTGCTTCAAGCTACATTTGTAGGAGGATGTGTTGCGGCCATGCCTTTTCTTAAAATGATCCCAACGTCAGTACTCTGGGGTTATTTTGCCTTTATGGCTGTTGAGAACTTACCGGGTAACCAATGTTGGGAGAGGATTCTACTGCTCTTCACTGCCCCAACTAGAAGATACAAAGTACTTGAGGAATACCACGCCACCTTCGTCGAAACAGTACCATTCAAGACAATTGCAGCTTTAACTATTTTCCAAACTGCTTACTTGCTTGTTTGCTTCGGAATTACATGGGTTCCTACTGCTGGGGTTCTTTTCCCATTAATGATCATGCTTCTGGTTCCCGTTAGACAGTACATTTTGCCCAAGTTCTTCAAAGCCGCACACCTGCAGGATTTAGATGCCGCAGAGTATGAAGAGGCACCTGCTTTACCATGCAACCAGGCAACTGAGCGGGAGATGAGTAGGACAGCGTCATTCGCAGACGAAGGAGAGATTTTGGATGGGATGATTACTAGAAGCCGGGGCGAGATCAGGCATGTGTGCAGTCCTAAAGTGGCAAATTCACCAACAGCATCATCCAAGGAATTCAAAAGTAGTCTGAGCTTCTCGGACAAGGTAATCAGTCCTCGTCTAAGCCAGCTGAGAGGCGATCAAAGTCCTCGGGGTGTCGGAAAAGGGCCATTTAGTCCAAGGAGCGGAGAGCCAAAATCATCTAACTTACGGAAGAGCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006873 GO:0006885 GO:0007275 GO:0008150 GO:0008509 GO:0009987 GO:0010036 GO:0012505 GO:0015075 GO:0016020 GO:0016021 GO:0019725 GO:0022622 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098656 GO:0098771 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

410

Amino Acids

45.55

Weight (kDa)

7.6

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HCO3_cotransp	PF00955	2 - 70	9.2e-12	HCO3- transporter integral membrane domain
HCO3_cotransp	PF00955	158 - 300	3e-28	HCO3- transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024243)

Species	Orthologous Gene IDs
malus_domestica	MD13G1146400.v1.1
pyrus_communis	pycom13g12600 pycom16g12450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	888, 925
Acc36I	ACCTGC	2 cut(s)	888, 925
AccB1I	GGYRCC	1 cut(s)	913
AccB7I	CCANNNNNTGG	2 cut(s)	34, 158
AccBSI	CCGCTC	3 cut(s)	946, 1191, 1224
AciI	CCGC	7 cut(s)	490, 536, 873, 897, 946, 1191, 1224
AclWI	GGATC	1 cut(s)	553
AcoI	YGGCCR	2 cut(s)	198, 537
AcsI	RAATTY	3 cut(s)	62, 1054, 1079
AcuI	CTGAAG	2 cut(s)	227, 330
AdeI	CACNNNGTG	1 cut(s)	34
AfaI	GTAC	5 cut(s)	17, 573, 678, 714, 848
AfiI	CCNNNNNNNGG	5 cut(s)	34, 158, 628, 797, 1190
AgsI	TTSAA	9 cut(s)	67, 370, 378, 386, 396, 509, 721, 868, 1084
AjnI	CCWGG	2 cut(s)	336, 933
AluBI	AGCT	6 cut(s)	273, 350, 512, 734, 1098, 1135
AluI	AGCT	6 cut(s)	273, 350, 512, 734, 1098, 1135
Alw26I	GTCTC	2 cut(s)	140, 422
AlwI	GGATC	1 cut(s)	553
Ama87I	CYCGRG	2 cut(s)	351, 1155
AoxI	GGCC	3 cut(s)	198, 537, 1172
ApeKI	GCWGC	2 cut(s)	487, 731
ApoI	RAATTY	3 cut(s)	62, 1054, 1079
AseI	ATTAAT	1 cut(s)	815
Asp700I	GAANNNNTTC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	1172
AsuC2I	CCSGG	2 cut(s)	615, 1016
AsuHPI	GGTGA	3 cut(s)	416, 490, 1050
AvaI	CYCGRG	2 cut(s)	351, 1155
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	913
BbvI	GCAGC	2 cut(s)	499, 743
BccI	CCATC	2 cut(s)	160, 989
BciT130I	CCWGG	2 cut(s)	338, 935
BclI	TGATCA	1 cut(s)	819
BcnI	CCSGG	2 cut(s)	615, 1016
BcoDI	GTCTC	2 cut(s)	140, 422
BfaI	CTAG	3 cut(s)	329, 663, 1008
BfmI	CTRYAG	1 cut(s)	881
BfuAI	ACCTGC	2 cut(s)	888, 925
BglI	GCCNNNNNGGC	1 cut(s)	596
BisI	GCNGC	7 cut(s)	488, 491, 537, 732, 873, 897, 1225
BlpI	GCTNAGC	2 cut(s)	51, 494
BlsI	GCNGC	7 cut(s)	489, 492, 538, 733, 874, 898, 1226
BmcAI	AGTACT	2 cut(s)	573, 678
Bme1390I	CCNGG	4 cut(s)	338, 615, 935, 1016
BmeT110I	CYCGRG	2 cut(s)	351, 1155
BmgT120I	GGNCC	1 cut(s)	1172
BmiI	GGNNCC	4 cut(s)	342, 789, 834, 915
BmrFI	CCNGG	4 cut(s)	338, 615, 935, 1016
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	4 cut(s)	306, 403, 883, 1076
BmuI	ACTGGG	1 cut(s)	413
Bpu1102I	GCTNAGC	2 cut(s)	51, 494
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	2 cut(s)	615, 1016
Bsa29I	ATCGAT	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	4 cut(s)	1015, 1074, 1154, 1184
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 158, 628, 797, 1190
Bse1I	ACTGG	2 cut(s)	214, 419
BseBI	CCWGG	2 cut(s)	338, 935
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	1015, 1074, 1154, 1184
BseGI	GGATG	5 cut(s)	152, 533, 1000, 1005, 1070
BseLI	CCNNNNNNNGG	5 cut(s)	34, 158, 628, 797, 1190
BseMII	CTCAG	4 cut(s)	65, 933, 1085, 1127
BseNI	ACTGG	2 cut(s)	214, 419
BseXI	GCAGC	2 cut(s)	499, 743
BseYI	CCCAGC	1 cut(s)	797
BsgI	GTGCAG	1 cut(s)	1057
BshFI	GGCC	3 cut(s)	200, 539, 1174
BshNI	GGYRCC	1 cut(s)	913
BshVI	ATCGAT	1 cut(s)	456
BsiHKCI	CYCGRG	2 cut(s)	351, 1155
BsiSI	CCGG	2 cut(s)	614, 1015
BslI	CCNNNNNNNGG	5 cut(s)	34, 158, 628, 797, 1190
BsmAI	GTCTC	2 cut(s)	140, 422
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	3 cut(s)	200, 539, 1174
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	2 cut(s)	351, 1155
Bsp143I	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1144
Bsp1720I	GCTNAGC	2 cut(s)	51, 494
BspACI	CCGC	7 cut(s)	490, 536, 873, 897, 946, 1191, 1224
BspANI	GGCC	3 cut(s)	200, 539, 1174
BspCNI	CTCAG	4 cut(s)	64, 934, 1086, 1128
BspDI	ATCGAT	1 cut(s)	456
BspLI	GGNNCC	4 cut(s)	342, 789, 834, 915
BspMAI	CTGCAG	1 cut(s)	885
BspMI	ACCTGC	2 cut(s)	888, 925
BspPI	GGATC	1 cut(s)	553
BspQI	GCTCTTC	2 cut(s)	653, 1214
BspT107I	GGYRCC	1 cut(s)	913
BspTNI	GGTCTC	1 cut(s)	140
BsrBI	CCGCTC	3 cut(s)	946, 1191, 1224
BsrI	ACTGG	2 cut(s)	214, 419
BssECI	CCNNGG	4 cut(s)	1015, 1074, 1154, 1184
BssMI	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1144
BssT1I	CCWWGG	2 cut(s)	1074, 1184
Bst2UI	CCWGG	2 cut(s)	338, 935
Bst4CI	ACNGT	5 cut(s)	32, 382, 433, 712, 846
Bst6I	CTCTTC	3 cut(s)	653, 903, 1214
BstC8I	GCNNGC	3 cut(s)	271, 296, 1133
BstDEI	CTNAG	8 cut(s)	51, 109, 139, 494, 942, 1094, 1127, 1136
BstEII	GGTNACC	1 cut(s)	617
BstF5I	GGATG	5 cut(s)	152, 533, 1000, 1005, 1070
BstKTI	GATC	6 cut(s)	100, 456, 561, 822, 1026, 1147
BstMAI	GTCTC	2 cut(s)	140, 422
BstMBI	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1144
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 971
BstNI	CCWGG	2 cut(s)	338, 935
BstNSI	RCATGY	2 cut(s)	298, 1034
BstPI	GGTNACC	1 cut(s)	617
BstSCI	CCNGG	4 cut(s)	336, 613, 933, 1014
BstSFI	CTRYAG	1 cut(s)	881
BstV1I	GCAGC	2 cut(s)	499, 743
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	3 cut(s)	200, 539, 1174
BsuTUI	ATCGAT	1 cut(s)	456
BtsCI	GGATG	5 cut(s)	152, 533, 1000, 1005, 1070
BtsI	GCAGTG	2 cut(s)	15, 651
BtsIMutI	CAGTG	5 cut(s)	15, 37, 203, 438, 651
BveI	ACCTGC	2 cut(s)	888, 925
Cac8I	GCNNGC	3 cut(s)	271, 296, 1133
Cfr13I	GGNCC	1 cut(s)	1172
ClaI	ATCGAT	1 cut(s)	456
CseI	GACGC	1 cut(s)	954
Csp6I	GTAC	5 cut(s)	16, 572, 677, 713, 847
CviAII	CATG	8 cut(s)	118, 295, 400, 541, 783, 823, 927, 1031
CviQI	GTAC	5 cut(s)	16, 572, 677, 713, 847
DdeI	CTNAG	8 cut(s)	51, 109, 139, 494, 942, 1094, 1127, 1136
DpnI	GATC	6 cut(s)	99, 455, 560, 821, 1025, 1146
DpnII	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1144
DraIII	CACNNNGTG	1 cut(s)	34
EaeI	YGGCCR	2 cut(s)	198, 537
Eam1104I	CTCTTC	3 cut(s)	653, 903, 1214
EarI	CTCTTC	3 cut(s)	653, 903, 1214
Eco130I	CCWWGG	2 cut(s)	1074, 1184
Eco31I	GGTCTC	1 cut(s)	140
Eco57I	CTGAAG	2 cut(s)	227, 330
Eco88I	CYCGRG	2 cut(s)	351, 1155
Eco91I	GGTNACC	1 cut(s)	617
EcoO65I	GGTNACC	1 cut(s)	617
EcoRI	GAATTC	2 cut(s)	62, 1079
EcoRII	CCWGG	2 cut(s)	336, 933
EcoT14I	CCWWGG	2 cut(s)	1074, 1184
EcoT22I	ATGCAT	1 cut(s)	186
ErhI	CCWWGG	2 cut(s)	1074, 1184
FaeI	CATG	8 cut(s)	121, 298, 403, 544, 786, 826, 930, 1034
FatI	CATG	8 cut(s)	117, 294, 399, 540, 782, 822, 926, 1030
FauI	CCCGC	1 cut(s)	939
FbaI	TGATCA	1 cut(s)	819
Fnu4HI	GCNGC	7 cut(s)	488, 491, 537, 732, 873, 897, 1225
FokI	GGATG	5 cut(s)	139, 540, 1007, 1012, 1057
Fsp4HI	GCNGC	7 cut(s)	488, 491, 537, 732, 873, 897, 1225
FspBI	CTAG	3 cut(s)	329, 663, 1008
GluI	GCNGC	7 cut(s)	488, 491, 537, 732, 873, 897, 1225
GsaI	CCCAGC	1 cut(s)	801
HaeIII	GGCC	3 cut(s)	200, 539, 1174
HapII	CCGG	2 cut(s)	614, 1015
HgaI	GACGC	1 cut(s)	954
Hin1II	CATG	8 cut(s)	121, 298, 403, 544, 786, 826, 930, 1034
HinfI	GANTC	3 cut(s)	302, 374, 637
HpaII	CCGG	2 cut(s)	614, 1015
HphI	GGTGA	3 cut(s)	416, 490, 1050
Hpy188I	TCNGA	4 cut(s)	776, 1095, 1105, 1166
Hpy188III	TCNNGA	1 cut(s)	721
Hpy99I	CGWCG	1 cut(s)	707
HpyAV	CCTTC	6 cut(s)	52, 93, 354, 442, 709, 974
HpyCH4III	ACNGT	5 cut(s)	32, 382, 433, 712, 846
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	8 cut(s)	8, 184, 298, 319, 731, 883, 930, 1038
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 971
HpyF3I	CTNAG	8 cut(s)	51, 109, 139, 494, 942, 1094, 1127, 1136
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	8 cut(s)	121, 298, 403, 544, 786, 826, 930, 1034
Ksp22I	TGATCA	1 cut(s)	819
Kzo9I	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1144
LguI	GCTCTTC	2 cut(s)	653, 1214
LmnI	GCTCC	1 cut(s)	1188
Lsp1109I	GCAGC	2 cut(s)	499, 743
LweI	GCATC	4 cut(s)	306, 403, 883, 1076
MaeI	CTAG	3 cut(s)	329, 663, 1008
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	3 cut(s)	216, 404, 617
MalI	GATC	6 cut(s)	99, 455, 560, 821, 1025, 1146
MbiI	CCGCTC	3 cut(s)	946, 1191, 1224
MboI	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1144
MboII	GAAGA	4 cut(s)	640, 678, 856, 920
MfeI	CAATTG	1 cut(s)	726
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	6 cut(s)	62, 67, 726, 777, 1054, 1079
MluNI	TGGCCA	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	1144
MnlI	CCTC	9 cut(s)	159, 469, 518, 627, 676, 904, 1131, 1133, 1164
Mox20I	TGGCCA	1 cut(s)	200
Mph1103I	ATGCAT	1 cut(s)	186
MroXI	GAANNNNTTC	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	4 cut(s)	359, 552, 737, 815
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	2 cut(s)	490, 1135
MspI	CCGG	2 cut(s)	614, 1015
MspR9I	CCNGG	4 cut(s)	338, 615, 935, 1016
MunI	CAATTG	1 cut(s)	726
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	2 cut(s)	338, 935
MwoI	GCNNNNNNNGC	2 cut(s)	596, 971
NciI	CCSGG	2 cut(s)	615, 1016
NdeII	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1144
NlaIII	CATG	8 cut(s)	121, 298, 403, 544, 786, 826, 930, 1034
NlaIV	GGNNCC	4 cut(s)	342, 789, 834, 915
NmuCI	GTSAC	1 cut(s)	404
NsiI	ATGCAT	1 cut(s)	186
NspI	RCATGY	2 cut(s)	298, 1034
PaeI	GCATGC	1 cut(s)	298
PaqCI	CACCTGC	2 cut(s)	888, 925
PciSI	GCTCTTC	2 cut(s)	653, 1214
PcsI	WCGNNNNNNNCGW	1 cut(s)	699
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	3 cut(s)	302, 374, 637
PflFI	GACNNNGTC	1 cut(s)	964
PflMI	CCANNNNNTGG	2 cut(s)	34, 158
PkrI	GCNGC	7 cut(s)	489, 492, 538, 733, 874, 898, 1226
PshBI	ATTAAT	1 cut(s)	815
Psp6I	CCWGG	2 cut(s)	336, 933
PspEI	GGTNACC	1 cut(s)	617
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	2 cut(s)	336, 933
PspN4I	GGNNCC	4 cut(s)	342, 789, 834, 915
PspPI	GGNCC	1 cut(s)	1172
PstI	CTGCAG	1 cut(s)	885
PsyI	GACNNNGTC	1 cut(s)	964
PvuII	CAGCTG	1 cut(s)	1135
RsaI	GTAC	5 cut(s)	17, 573, 678, 714, 848
RsaNI	GTAC	5 cut(s)	16, 572, 677, 713, 847
SapI	GCTCTTC	2 cut(s)	653, 1214
SaqAI	TTAA	4 cut(s)	359, 552, 737, 815
SatI	GCNGC	7 cut(s)	488, 491, 537, 732, 873, 897, 1225
Sau3AI	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1144
Sau96I	GGNCC	1 cut(s)	1172
SbfI	CCTGCAGG	1 cut(s)	885
ScaI	AGTACT	2 cut(s)	573, 678
ScrFI	CCNGG	4 cut(s)	338, 615, 935, 1016
SdaI	CCTGCAGG	1 cut(s)	885
SfaNI	GCATC	4 cut(s)	306, 403, 883, 1076
SfcI	CTRYAG	1 cut(s)	881
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
SphI	GCATGC	1 cut(s)	298
Sse8387I	CCTGCAGG	1 cut(s)	885
Sse9I	AATT	6 cut(s)	62, 67, 726, 777, 1054, 1079
SsiI	CCGC	7 cut(s)	490, 536, 873, 897, 946, 1191, 1224
SspMI	CTAG	3 cut(s)	329, 663, 1008
StyD4I	CCNGG	4 cut(s)	336, 613, 933, 1014
StyI	CCWWGG	2 cut(s)	1074, 1184
TaaI	ACNGT	5 cut(s)	32, 382, 433, 712, 846
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	3 cut(s)	229, 456, 705
TasI	AATT	6 cut(s)	62, 67, 726, 777, 1054, 1079
TatI	WGTACW	4 cut(s)	15, 571, 676, 846
TauI	GCSGC	5 cut(s)	493, 539, 875, 899, 1227
TfiI	GAWTC	3 cut(s)	302, 374, 637
Tru1I	TTAA	4 cut(s)	359, 552, 737, 815
Tru9I	TTAA	4 cut(s)	359, 552, 737, 815
TscAI	CASTG	5 cut(s)	15, 37, 210, 438, 658
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	487, 731
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	75, 106, 921
TspRI	CASTG	5 cut(s)	15, 37, 210, 438, 658
Tth111I	GACNNNGTC	1 cut(s)	964
Van91I	CCANNNNNTGG	2 cut(s)	34, 158
VspI	ATTAAT	1 cut(s)	815
XapI	RAATTY	3 cut(s)	62, 1054, 1079
XceI	RCATGY	2 cut(s)	298, 1034
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	3 cut(s)	329, 663, 1008
ZrmI	AGTACT	2 cut(s)	573, 678
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.