Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0024243

Physical Location & Seq

Genomic Coordinates Forward (+)

8736177 .. 8736407

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g12450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGTTACTAGAAGCCGGGGCGAGATCAGGCATGTGTGCAGTCCTAAAGTGACAAGCTCACCTACAACATCATCCAAGGAATTGAAAAGCACACTGAGCTTCTCGGACAAGGTAATCAGTCCTCGTCTAAGCGAGCTGAGAGGCGACCAAAGTCCTCGGAGTGGCGGAAAAGGACCATTTAGTCCAAGGAGTGGAGAACCGAAATCATCTAACTTAGGGAAGAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006873 GO:0006885 GO:0007275 GO:0008150 GO:0008509 GO:0009987 GO:0010036 GO:0012505 GO:0015075 GO:0016020 GO:0016021 GO:0019725 GO:0022622 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098656 GO:0098771 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

77

Amino Acids

8.06

Weight (kDa)

10.65

Isoelectric Point (pI)

71.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024243)

Species	Orthologous Gene IDs
malus_domestica	MD13G1146400.v1.1
pyrus_communis	pycom13g12600 pycom16g12450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	191
AciI	CCGC	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	161, 191
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	3 cut(s)	57, 99, 136
AluI	AGCT	3 cut(s)	57, 99, 136
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	17
BfaI	CTAG	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	17
BoxI	GACNNNNGTC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	17
BsaJI	CCNNGG	4 cut(s)	16, 75, 155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 191
BseDI	CCNNGG	4 cut(s)	16, 75, 155, 185
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	2 cut(s)	161, 191
BseMII	CTCAG	2 cut(s)	86, 128
BsgI	GTGCAG	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	161, 191
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	87, 129
BssECI	CCNNGG	4 cut(s)	16, 75, 155, 185
BssMI	GATC	1 cut(s)	24
BssT1I	CCWWGG	2 cut(s)	75, 185
Bst6I	CTCTTC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	4 cut(s)	95, 128, 137, 214
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	35
BstPAI	GACNNNNGTC	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	173
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	4 cut(s)	15, 57, 99, 136
CviKI_1	RGCY	4 cut(s)	15, 57, 99, 136
DdeI	CTNAG	4 cut(s)	95, 128, 137, 214
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
DrdI	GACNNNNNNGTC	1 cut(s)	180
DseDI	GACNNNNNNGTC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
EciI	GGCGGA	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	75, 185
Eco47I	GGWCC	1 cut(s)	173
EcoT14I	CCWWGG	2 cut(s)	75, 185
ErhI	CCWWGG	2 cut(s)	75, 185
FaeI	CATG	1 cut(s)	35
FaiI	YATR	1 cut(s)	33
FatI	CATG	1 cut(s)	31
FokI	GGATG	1 cut(s)	58
FspBI	CTAG	1 cut(s)	9
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	1 cut(s)	35
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	106, 159
HpyCH4V	TGCA	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	4 cut(s)	95, 128, 137, 214
Hsp92II	CATG	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	24
LpnPI	CCDG	2 cut(s)	13, 29
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	4, 49
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	3 cut(s)	132, 134, 165
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	35
PflMI	CCANNNNNTGG	1 cut(s)	191
PshAI	GACNNNNGTC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	173
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	5 cut(s)	59, 64, 101, 114, 138
SinI	GGWCC	1 cut(s)	173
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	75, 185
TasI	AATT	1 cut(s)	80
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspRI	CASTG	1 cut(s)	99
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	173
XceI	RCATGY	1 cut(s)	35
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.