Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0024243

Physical Location & Seq

Genomic Coordinates Forward (+)

8767679 .. 8769665

Gene Structure 1987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12600.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGATTGCAGTGTTGTACTATTTTGACCACAGTGTGGCTTCCCAACTTGCTCAGCAGAAGGAATTCAATTTGAGAAAACCGCCTTCTTTCCATTACGATCTACTTCTCTTAGGGTTTATGGTCATAATATGTGGTCTCTTAGGCATTCCTCCATCCAATGGTGTCATACCGCAATCTCCAATGCATACAAAAAGTTTGGCCACACTGAAGCACCAGTTACTTCGCAATCGACTTGTAGCGACAGCAAGGAGATGTATTAGGAACAATGCCAGCTTGGAACAAGTATATGGAAGCATGCAAGAATCATATCAACAGATGCAAACCCCACTAGCATACCAGGAACCTTCAGCTCGGGGATTAAATGACTTGAAAGATTCAACTGTTCAAATGGCTTCAAGCATGGGTGACATAGATGCCCCAGTTGATGAGACAGTGTTTGATGTTGAGAAGGAGATCGATGATTTATTGCCTGTTGAGGTGAAAGAGCAGCGGCTCAGCAACTTGCTTCAAGCTGCATTTGTAGGAGGATGTGTTGCGGCCATGCCTTTTCTTAAAATGATCCCAACGTCAGTACTCTGGGGTTATTTTGCCTTTATGGCTGTTGAGAACTTACCGGGTAACCAATGTTGGGAGAGGATTCTGTTGCTTTTCACTGCCCCAACTAGAAGATACAAAGTACTCGAGGAATACCACGCAACTTTTGTTGAAACAGTACCATTCAAGACAATTGCAGCGTTAACCATTTTCCAAACTGCTTACTTGCTTGTTTGCTTCGGAATTACATGGGTTCCTACTGCTGGGGTTCTTTTCCCATTAATGATCATGCTTCTGGTTCCTGTTAGACAATACATTTTGCCCAAGTTTTTCAAAGCCGCACACCTGCAAGATTTAGATGCCGCAGAGTATGAAGAGGCACCTGCTTTGCCATTCAACCATGCAACTGAGCGGGAGATGAGTAGGACAGCTTCATTTGCAGACGAAGGAGAGATTTTAGATGGGATGATTACGAGAAGCCGGGGCGAGATCAGGCATGTGTGCAGTCCTAAAGTGGCAAGTTCACCTACAGCATCATCCAAGGAATTCAAAAGTACACTGAGCTTCTCGGACAAGGTAATCAGTCCTCGTCTAAGCCAGCTGAGAGGCGACCAAAGTCCTCGGGGTGGCGGAAAAGGGCCATTTAGTCCAAGAAGCGGAGAACCAAAATCATCAAACTTAAGGAAGATCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006873 GO:0006885 GO:0007275 GO:0008150 GO:0008509 GO:0009987 GO:0010036 GO:0012505 GO:0015075 GO:0016020 GO:0016021 GO:0019725 GO:0022622 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098656 GO:0098771 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

410

Amino Acids

45.54

Weight (kDa)

7.63

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024243)

Species	Orthologous Gene IDs
malus_domestica	MD13G1146400.v1.1
pyrus_communis	pycom13g12600 pycom16g12450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	888, 925
Acc36I	ACCTGC	2 cut(s)	888, 925
AccB1I	GGYRCC	1 cut(s)	913
AccB7I	CCANNNNNTGG	2 cut(s)	34, 158
AccBSI	CCGCTC	1 cut(s)	946
AciI	CCGC	9 cut(s)	80, 170, 490, 536, 873, 897, 946, 1164, 1191
AclWI	GGATC	1 cut(s)	553
AcoI	YGGCCR	2 cut(s)	198, 537
AcsI	RAATTY	2 cut(s)	62, 1079
AcuI	CTGAAG	2 cut(s)	227, 330
AdeI	CACNNNGTG	1 cut(s)	34
AfaI	GTAC	5 cut(s)	17, 573, 678, 714, 1090
AfiI	CCNNNNNNNGG	6 cut(s)	34, 158, 628, 797, 1160, 1190
AflII	CTTAAG	1 cut(s)	1213
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	6 cut(s)	273, 350, 512, 965, 1098, 1135
AluI	AGCT	6 cut(s)	273, 350, 512, 965, 1098, 1135
Alw26I	GTCTC	2 cut(s)	140, 422
AlwI	GGATC	1 cut(s)	553
Ama87I	CYCGRG	3 cut(s)	351, 680, 1155
AoxI	GGCC	3 cut(s)	198, 537, 1172
ApeKI	GCWGC	3 cut(s)	487, 512, 731
ApoI	RAATTY	2 cut(s)	62, 1079
AseI	ATTAAT	1 cut(s)	815
Asp700I	GAANNNNTTC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	1172
AsuC2I	CCSGG	2 cut(s)	615, 1016
AsuHPI	GGTGA	3 cut(s)	416, 490, 1050
AvaI	CYCGRG	3 cut(s)	351, 680, 1155
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	913
BarI	GAAGNNNNNNTAC	2 cut(s)	949, 981
BbvI	GCAGC	3 cut(s)	499, 499, 743
BccI	CCATC	2 cut(s)	160, 989
BciT130I	CCWGG	1 cut(s)	338
BclI	TGATCA	1 cut(s)	819
BcnI	CCSGG	2 cut(s)	615, 1016
BcoDI	GTCTC	2 cut(s)	140, 422
BfaI	CTAG	2 cut(s)	329, 663
BfmI	CTRYAG	1 cut(s)	1062
BfrI	CTTAAG	1 cut(s)	1213
BfuAI	ACCTGC	2 cut(s)	888, 925
BglI	GCCNNNNNGGC	1 cut(s)	596
BisI	GCNGC	7 cut(s)	488, 491, 513, 537, 732, 873, 897
BlpI	GCTNAGC	2 cut(s)	51, 494
BlsI	GCNGC	7 cut(s)	489, 492, 514, 538, 733, 874, 898
BmcAI	AGTACT	2 cut(s)	573, 678
Bme1390I	CCNGG	3 cut(s)	338, 615, 1016
BmeT110I	CYCGRG	3 cut(s)	351, 680, 1155
BmgT120I	GGNCC	1 cut(s)	1172
BmiI	GGNNCC	4 cut(s)	342, 789, 834, 915
BmrFI	CCNGG	3 cut(s)	338, 615, 1016
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	4 cut(s)	306, 403, 883, 1076
BmuI	ACTGGG	1 cut(s)	413
BoxI	GACNNNNGTC	1 cut(s)	1149
Bpu1102I	GCTNAGC	2 cut(s)	51, 494
BpuMI	CCSGG	2 cut(s)	615, 1016
Bsa29I	ATCGAT	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	1015, 1074, 1154
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 158, 628, 797, 1160, 1190
Bse1I	ACTGG	2 cut(s)	214, 419
BseBI	CCWGG	1 cut(s)	338
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	1015, 1074, 1154
BseGI	GGATG	4 cut(s)	152, 533, 1005, 1070
BseLI	CCNNNNNNNGG	6 cut(s)	34, 158, 628, 797, 1160, 1190
BseMII	CTCAG	5 cut(s)	65, 508, 933, 1085, 1127
BseNI	ACTGG	2 cut(s)	214, 419
BseXI	GCAGC	3 cut(s)	499, 499, 743
BseYI	CCCAGC	1 cut(s)	797
BsgI	GTGCAG	1 cut(s)	1057
BshFI	GGCC	3 cut(s)	200, 539, 1174
BshNI	GGYRCC	1 cut(s)	913
BshVI	ATCGAT	1 cut(s)	456
BsiHKCI	CYCGRG	3 cut(s)	351, 680, 1155
BsiSI	CCGG	2 cut(s)	614, 1015
BslI	CCNNNNNNNGG	6 cut(s)	34, 158, 628, 797, 1160, 1190
BsmAI	GTCTC	2 cut(s)	140, 422
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	3 cut(s)	200, 539, 1174
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	3 cut(s)	351, 680, 1155
Bsp143I	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1221
Bsp1720I	GCTNAGC	2 cut(s)	51, 494
BspACI	CCGC	9 cut(s)	80, 170, 490, 536, 873, 897, 946, 1164, 1191
BspANI	GGCC	3 cut(s)	200, 539, 1174
BspCNI	CTCAG	5 cut(s)	64, 507, 934, 1086, 1128
BspDI	ATCGAT	1 cut(s)	456
BspLI	GGNNCC	4 cut(s)	342, 789, 834, 915
BspMI	ACCTGC	2 cut(s)	888, 925
BspPI	GGATC	1 cut(s)	553
BspT107I	GGYRCC	1 cut(s)	913
BspTI	CTTAAG	1 cut(s)	1213
BspTNI	GGTCTC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	946
BsrI	ACTGG	2 cut(s)	214, 419
BssECI	CCNNGG	3 cut(s)	1015, 1074, 1154
BssMI	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1221
BssT1I	CCWWGG	1 cut(s)	1074
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	4 cut(s)	32, 382, 433, 712
Bst6I	CTCTTC	1 cut(s)	903
BstAFI	CTTAAG	1 cut(s)	1213
BstC8I	GCNNGC	3 cut(s)	271, 296, 1133
BstDEI	CTNAG	8 cut(s)	51, 109, 139, 494, 942, 1094, 1127, 1136
BstEII	GGTNACC	1 cut(s)	617
BstF5I	GGATG	4 cut(s)	152, 533, 1005, 1070
BstKTI	GATC	6 cut(s)	100, 456, 561, 822, 1026, 1224
BstMAI	GTCTC	2 cut(s)	140, 422
BstMBI	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1221
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 971
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	2 cut(s)	298, 1034
BstPAI	GACNNNNGTC	1 cut(s)	1149
BstPI	GGTNACC	1 cut(s)	617
BstSCI	CCNGG	3 cut(s)	336, 613, 1014
BstSFI	CTRYAG	1 cut(s)	1062
BstV1I	GCAGC	3 cut(s)	499, 499, 743
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	3 cut(s)	200, 539, 1174
BsuTUI	ATCGAT	1 cut(s)	456
BtsCI	GGATG	4 cut(s)	152, 533, 1005, 1070
BtsI	GCAGTG	2 cut(s)	15, 651
BtsIMutI	CAGTG	6 cut(s)	15, 37, 203, 438, 651, 1091
BveI	ACCTGC	2 cut(s)	888, 925
Cac8I	GCNNGC	3 cut(s)	271, 296, 1133
Cfr13I	GGNCC	1 cut(s)	1172
ClaI	ATCGAT	1 cut(s)	456
Csp6I	GTAC	5 cut(s)	16, 572, 677, 713, 1089
CviAII	CATG	7 cut(s)	295, 400, 541, 783, 823, 935, 1031
CviQI	GTAC	5 cut(s)	16, 572, 677, 713, 1089
DdeI	CTNAG	8 cut(s)	51, 109, 139, 494, 942, 1094, 1127, 1136
DpnI	GATC	6 cut(s)	99, 455, 560, 821, 1025, 1223
DpnII	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1221
DraIII	CACNNNGTG	1 cut(s)	34
EaeI	YGGCCR	2 cut(s)	198, 537
Eam1104I	CTCTTC	1 cut(s)	903
EarI	CTCTTC	1 cut(s)	903
EciI	GGCGGA	1 cut(s)	1179
Eco130I	CCWWGG	1 cut(s)	1074
Eco31I	GGTCTC	1 cut(s)	140
Eco57I	CTGAAG	2 cut(s)	227, 330
Eco88I	CYCGRG	3 cut(s)	351, 680, 1155
Eco91I	GGTNACC	1 cut(s)	617
EcoO65I	GGTNACC	1 cut(s)	617
EcoRI	GAATTC	2 cut(s)	62, 1079
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	1074
EcoT22I	ATGCAT	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	1074
FaeI	CATG	7 cut(s)	298, 403, 544, 786, 826, 938, 1034
FatI	CATG	7 cut(s)	294, 399, 540, 782, 822, 934, 1030
FauI	CCCGC	1 cut(s)	939
FbaI	TGATCA	1 cut(s)	819
Fnu4HI	GCNGC	7 cut(s)	488, 491, 513, 537, 732, 873, 897
FokI	GGATG	4 cut(s)	139, 540, 1012, 1057
Fsp4HI	GCNGC	7 cut(s)	488, 491, 513, 537, 732, 873, 897
FspBI	CTAG	2 cut(s)	329, 663
GluI	GCNGC	7 cut(s)	488, 491, 513, 537, 732, 873, 897
GsaI	CCCAGC	1 cut(s)	801
HaeIII	GGCC	3 cut(s)	200, 539, 1174
HapII	CCGG	2 cut(s)	614, 1015
Hin1II	CATG	7 cut(s)	298, 403, 544, 786, 826, 938, 1034
HincII	GTYRAC	1 cut(s)	738
HindII	GTYRAC	1 cut(s)	738
HinfI	GANTC	3 cut(s)	302, 374, 637
HpaI	GTTAAC	1 cut(s)	738
HpaII	CCGG	2 cut(s)	614, 1015
HphI	GGTGA	3 cut(s)	416, 490, 1050
Hpy166II	GTNNAC	3 cut(s)	738, 1058, 1091
Hpy188I	TCNGA	2 cut(s)	776, 1105
Hpy188III	TCNNGA	1 cut(s)	721
Hpy8I	GTNNAC	3 cut(s)	738, 1058, 1091
HpyAV	CCTTC	5 cut(s)	52, 93, 354, 442, 974
HpyCH4III	ACNGT	4 cut(s)	32, 382, 433, 712
HpyCH4IV	ACGT	1 cut(s)	566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 971
HpyF3I	CTNAG	8 cut(s)	51, 109, 139, 494, 942, 1094, 1127, 1136
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	7 cut(s)	298, 403, 544, 786, 826, 938, 1034
Ksp22I	TGATCA	1 cut(s)	819
KspAI	GTTAAC	1 cut(s)	738
Kzo9I	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1221
Lsp1109I	GCAGC	3 cut(s)	499, 499, 743
LweI	GCATC	4 cut(s)	306, 403, 883, 1076
MaeI	CTAG	2 cut(s)	329, 663
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	3 cut(s)	216, 404, 617
MalI	GATC	6 cut(s)	99, 455, 560, 821, 1025, 1223
MbiI	CCGCTC	1 cut(s)	946
MboI	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1221
MboII	GAAGA	2 cut(s)	678, 920
MfeI	CAATTG	1 cut(s)	726
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	5 cut(s)	62, 67, 726, 777, 1079
MluNI	TGGCCA	1 cut(s)	200
MnlI	CCTC	9 cut(s)	159, 469, 518, 627, 676, 904, 1131, 1133, 1164
Mox20I	TGGCCA	1 cut(s)	200
Mph1103I	ATGCAT	1 cut(s)	186
MroXI	GAANNNNTTC	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	5 cut(s)	359, 552, 737, 815, 1214
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	2 cut(s)	490, 1135
MspCI	CTTAAG	1 cut(s)	1213
MspI	CCGG	2 cut(s)	614, 1015
MspR9I	CCNGG	3 cut(s)	338, 615, 1016
MunI	CAATTG	1 cut(s)	726
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	596, 971
NciI	CCSGG	2 cut(s)	615, 1016
NdeII	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1221
NlaIII	CATG	7 cut(s)	298, 403, 544, 786, 826, 938, 1034
NlaIV	GGNNCC	4 cut(s)	342, 789, 834, 915
NmuCI	GTSAC	1 cut(s)	404
NsiI	ATGCAT	1 cut(s)	186
NspI	RCATGY	2 cut(s)	298, 1034
PaeI	GCATGC	1 cut(s)	298
PaeR7I	CTCGAG	1 cut(s)	680
PaqCI	CACCTGC	2 cut(s)	888, 925
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	3 cut(s)	302, 374, 637
PflMI	CCANNNNNTGG	2 cut(s)	34, 158
PkrI	GCNGC	7 cut(s)	489, 492, 514, 538, 733, 874, 898
PshAI	GACNNNNGTC	1 cut(s)	1149
PshBI	ATTAAT	1 cut(s)	815
Psp6I	CCWGG	1 cut(s)	336
PspEI	GGTNACC	1 cut(s)	617
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	4 cut(s)	342, 789, 834, 915
PspPI	GGNCC	1 cut(s)	1172
PspXI	VCTCGAGB	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	1135
RsaI	GTAC	5 cut(s)	17, 573, 678, 714, 1090
RsaNI	GTAC	5 cut(s)	16, 572, 677, 713, 1089
SaqAI	TTAA	5 cut(s)	359, 552, 737, 815, 1214
SatI	GCNGC	7 cut(s)	488, 491, 513, 537, 732, 873, 897
Sau3AI	GATC	6 cut(s)	97, 453, 558, 819, 1023, 1221
Sau96I	GGNCC	1 cut(s)	1172
ScaI	AGTACT	2 cut(s)	573, 678
ScrFI	CCNGG	3 cut(s)	338, 615, 1016
SfaNI	GCATC	4 cut(s)	306, 403, 883, 1076
SfcI	CTRYAG	1 cut(s)	1062
Sfr274I	CTCGAG	1 cut(s)	680
SlaI	CTCGAG	1 cut(s)	680
SmlI	CTYRAG	2 cut(s)	680, 1213
SmoI	CTYRAG	2 cut(s)	680, 1213
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	5 cut(s)	62, 67, 726, 777, 1079
SsiI	CCGC	9 cut(s)	80, 170, 490, 536, 873, 897, 946, 1164, 1191
SspMI	CTAG	2 cut(s)	329, 663
StyD4I	CCNGG	3 cut(s)	336, 613, 1014
StyI	CCWWGG	1 cut(s)	1074
TaaI	ACNGT	4 cut(s)	32, 382, 433, 712
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	3 cut(s)	229, 456, 681
TasI	AATT	5 cut(s)	62, 67, 726, 777, 1079
TatI	WGTACW	4 cut(s)	15, 571, 676, 1088
TauI	GCSGC	4 cut(s)	493, 539, 875, 899
TfiI	GAWTC	3 cut(s)	302, 374, 637
Tru1I	TTAA	5 cut(s)	359, 552, 737, 815, 1214
Tru9I	TTAA	5 cut(s)	359, 552, 737, 815, 1214
TscAI	CASTG	6 cut(s)	15, 37, 210, 438, 658, 1098
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	3 cut(s)	487, 512, 731
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	921, 957
TspRI	CASTG	6 cut(s)	15, 37, 210, 438, 658, 1098
Van91I	CCANNNNNTGG	2 cut(s)	34, 158
Vha464I	CTTAAG	1 cut(s)	1213
VspI	ATTAAT	1 cut(s)	815
XapI	RAATTY	2 cut(s)	62, 1079
XceI	RCATGY	2 cut(s)	298, 1034
XhoI	CTCGAG	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	2 cut(s)	329, 663
ZrmI	AGTACT	2 cut(s)	573, 678
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.