Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0019748

Physical Location & Seq

Genomic Coordinates Forward (+)

43131439 .. 43132361

Gene Structure 923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1284900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCTGGAATCGTTGTGTCGAAGTATGATCATAGCCCTGTGCACAAGGCCATAGTCACGAGGGATTATGCCGGTCTCAGGAGGATTCTAGCTGGCCTCCCGCGGCTTTGTGACCCTGCTGAGATTCGAACTCAATCAGCTTCATTAGCTGAGGAAGAGAAGGCTGATGCCATTGCTGCCGTCATTGACCGGAGAGATGTCCGAAACCATGAAACCCCTCTTCACTTGGCTGTAAAACTTGGTGACCAGACAGCGACCGAAATGCTTATGGTTGCCGGTGCGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_5 GPCR_chapero_1

Protein Analysis

96

Amino Acids

10.3

Weight (kDa)

6.05

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019748)

Species	Orthologous Gene IDs
malus_domestica	MD13G1284900.v1.1
prunus_persica	Prupe.7G222900_v2.0.a1
pyrus_communis	pycom420g00680
rosa_chinensis	RchiOBHm_Chr2g0105151 RchiOBHm_Chr2g0107541 RchiOBHm_Chr3g0491521
rosa_samantha	Rh2AG221900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	103
AciI	CCGC	3 cut(s)	101, 103, 281
AfiI	CCNNNNNNNGG	1 cut(s)	78
AluBI	AGCT	3 cut(s)	92, 140, 149
AluI	AGCT	3 cut(s)	92, 140, 149
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	80
Alw44I	GTGCAC	1 cut(s)	41
AoxI	GGCC	2 cut(s)	48, 94
ApaLI	GTGCAC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	104, 177
BlsI	GCNGC	2 cut(s)	105, 178
BmsI	GCATC	1 cut(s)	157
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse118I	RCCGGY	2 cut(s)	71, 275
Bse3DI	GCAATG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	3 cut(s)	91, 111, 141
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	163
Bsh1236I	CGCG	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	50, 96
BsiEI	CGRYCG	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	3 cut(s)	72, 190, 276
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	50, 96
Bso31I	GGTCTC	1 cut(s)	80
Bsp119I	TTCGAA	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	3 cut(s)	101, 103, 281
BspANI	GGCC	2 cut(s)	50, 96
BspCNI	CTCAG	3 cut(s)	90, 112, 142
BspFNI	CGCG	1 cut(s)	103
BspT104I	TTCGAA	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	2 cut(s)	71, 275
BssAI	RCCGGY	2 cut(s)	71, 275
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	1 cut(s)	28
BssSI	CACGAG	1 cut(s)	58
Bst2BI	CACGAG	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	150, 225
BstBI	TTCGAA	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	77, 120, 150
BstDSI	CCRYGG	1 cut(s)	101
BstEII	GGTNACC	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	103
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	1 cut(s)	28
BstMCI	CGRYCG	1 cut(s)	258
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 176
BstPI	GGTNACC	1 cut(s)	242
BstSLI	GKGCMC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	50, 96
BtgI	CCRYGG	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	94
Cfr10I	RCCGGY	2 cut(s)	71, 275
Cfr42I	CCGCGG	1 cut(s)	104
CviAII	CATG	1 cut(s)	209
DdeI	CTNAG	3 cut(s)	77, 120, 150
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eam1104I	CTCTTC	2 cut(s)	150, 225
EarI	CTCTTC	2 cut(s)	150, 225
Eco31I	GGTCTC	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	242
FaeI	CATG	1 cut(s)	212
FaiI	YATR	6 cut(s)	27, 33, 53, 69, 210, 269
FatI	CATG	1 cut(s)	208
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	104, 177
Fsp4HI	GCNGC	2 cut(s)	104, 177
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	2 cut(s)	104, 177
HaeIII	GGCC	2 cut(s)	50, 96
HapII	CCGG	3 cut(s)	72, 190, 276
Hin1II	CATG	1 cut(s)	212
HinfI	GANTC	3 cut(s)	9, 85, 124
HpaII	CCGG	3 cut(s)	72, 190, 276
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	2 cut(s)	58, 79
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	154
HpyCH4V	TGCA	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 176
HpyF3I	CTNAG	3 cut(s)	77, 120, 150
Hsp92II	CATG	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	28
KspI	CCGCGG	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	28
LpnPI	CCDG	7 cut(s)	51, 64, 78, 85, 129, 203, 260
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	3 cut(s)	55, 110, 242
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	2 cut(s)	167, 212
MhlI	GDGCHC	1 cut(s)	45
MnlI	CCTC	5 cut(s)	54, 75, 107, 145, 228
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	3 cut(s)	72, 190, 276
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	146, 176
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	1 cut(s)	212
NmuCI	GTSAC	3 cut(s)	55, 110, 242
NspV	TTCGAA	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	9, 85, 124
PkrI	GCNGC	2 cut(s)	105, 178
PspEI	GGTNACC	1 cut(s)	242
SacII	CCGCGG	1 cut(s)	104
SatI	GCNGC	2 cut(s)	104, 177
Sau3AI	GATC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	3 cut(s)	94, 142, 151
SfaNI	GCATC	1 cut(s)	157
Sfr303I	CCGCGG	1 cut(s)	104
SfuI	TTCGAA	1 cut(s)	127
SgrBI	CCGCGG	1 cut(s)	104
SsiI	CCGC	3 cut(s)	101, 103, 281
SspMI	CTAG	1 cut(s)	89
TaqI	TCGA	2 cut(s)	20, 127
TaqII	GACCGA	1 cut(s)	272
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	3 cut(s)	9, 85, 124
TseFI	GTSAC	3 cut(s)	55, 110, 242
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	3 cut(s)	55, 110, 242
TspDTI	ATGAA	2 cut(s)	132, 225
VneI	GTGCAC	1 cut(s)	41
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.