MD14G1075600.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0024274
Physical Location & Seq
Reverse (-)
8562693 .. 8566417
3725 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1075600.v1.1.491

Sequence Viewer

Length: 2145 bp
ATGACACTTGGCGCGGTTAGTTGTTCACACCGCAGAATTTGCAACTGTTATTTTCCTCCTATTTTTGTCAAATTTTCTTCATTATCTGCACTTAAAGCTACAGACTTTACTTATGAAGCAAGCAATTCCGATGACTGTAACTACCGTGAATTACAGCTCAGTATGCAATGCCATGCCTCCTCCGGTAACTTTGCGAAAGCCCTCGAGTCTTTGAACTCCATGGGCAATGTGCCCGGCAAACCCACTGTGTATGATTTCAATGCTTTGGTTTACTCTTACTTGAAGTCACAGACTGTATTGCTAGACAATGTGGTTCAGGTTTACCTCGGAATGAAGAGATTTGGGCCCGCCCCAAATGCTTCCACTTTCAATGCACTTTTGAATGGTATGCTATCACTTGGTCGTCTGAAAGATGCTTATATGATTGCTGAAGAGATGTTTGATTGTGGGTTTTTACCCTCTTTTACTTCTTTGTCGAGAATCTTGAAAAACATGCTTAGAGTTGGGAATTTAGTTAGCTCAATTGGTGTTTTTAAGCTTATGTTGAGGTTGAAGTATTTCCCGACCGAACCCAGTTTGTGTTTGTTGATTTCTAAGCTTAGTAAAGCCATGATGACCGAAGAGGCGTGGTTTGTGTGCTATGCTCTTATGTGTAAGGGTCATTTTTTCGGTGCTTATGTTTATAACCCTATGCTTTGGGCATTGTGTAAAACCGGCCAGAGTAATAATGCTTTGCAATTGTTTTATTGGATGAAGAGGAAGGGCGTTGTACACAATGTGTGCTCTTATACTGCCTTAGTTTATGGGTTTGGTAGAGAAGGTTTGTGGAGAGATCTTCTGTGTTGTTTAGATGAAATGGAGACTGATGGGTGTAAGCTTAGTGCGATAACATACACTATAGTTATTAAATCTCTTTGTGGTGATGGGAGGATTGCAGAGGCGTTAGAATATTTGGCTAAGATGGAAAGGGAAGGATGTGAACCAGATATGACCACATACAATGTGATCCTTCATGCACTTTGTATTCAAGATAGAGCGAATGACATTTTCAGCTTACTTGAGATGATTGAGAACAAAGGATTTTCTCCCAACGCATACACATATGCTGCCTTGGGAGGAGGCCTGTTAAAAACAGGTAACATTGGGATTGCTTGTGAACTACTGCTTGATGTGATTACAGAGGGCAACTATGTGGATGTTGTTGTGTACAATATATACTTCAATTGTTTGTGTCATGAGAATAGATCAGAAGAAGCGCTATATCGATTGAAGAAAATGATTGGGGAAGGTTTAATGCCAAGTAATGTGTCATATAACACAATTTTAAAGAGTTTCTGTAGAGAAAATAACCTCTCCAAGGCTTTGAAATTCTTGGACTACTTTAAGTGGGACGAAAATGGGCCTGATGTGGTTTCCTTCAATACGATTTTGTCTGTGGCATGCAAACAGAAAAAGAGTTCAGTGATCCGTAGGGTCTTGAGTCATATGAAGAATGGTGGTGTTCAGCCTAATGTTATTAGTTTGAATTGTTTAATTCAGTACTTCTGTAGAGTAAAAAACTTTTCTGAATGTCTGAAGCTCTTGGATTACATGACGTGTAGTGGTTCTAGTCCCACTATTGTCACTTTTAATCTGCTGCTAGACAGACTTTGTAAGAATGGTCTAGTTGGAATTGCAGAACGGGTTTTTAAGCAACTACGGAATACTGGATTTTTTCCTGATACAATTTCTTATAATATTCTTATTCACGCCTTCATTAAAGAGGGCAATAAGGCGATGGTTAATCAATTGGTTAGTGATATGTACAACCAGAGACTAAAACCGGATTTGTTTACCTATGGGTCCTTAATTAGTGGCCTTTGCAATGATGGAAAGGTATCTGTTGCTCTTGAGTTGAGGGATGACGTGATAGAGAATGGGCTTACTCCAAGCATAGCAATCTACAATACCTTATTGGAGGCAATGTTCAAGAGTGGTGCTTTTTCGGACATTTTATCATTATTGAAAAATCTTGTACTGGAAGGCTGTCAACCTAATGAGGTAACTTTCGAGATTCTTAGCCGACCAGTATTCAAAAGTTGGATAAAGAGATCTCCTGAGGTTTCAAATCTTGTGGAGCTTGTGCATGAATGCAAAGTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

715

Amino Acids

80.09

Weight (kDa)

8.08

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 226 - 271 3.6e-10 PPR repeat family
PPR_2 PF13041 259 - 306 2e-09 PPR repeat family
PPR_3 PF13812 283 - 339 3.2e-09 Pentatricopeptide repeat domain
TPR_24 PF23276 284 - 356 9.4e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 289 - 322 4.7e-07 PPR repeat
PPR_2 PF13041 300 - 341 2.7e-10 PPR repeat family
PPR_2 PF13041 332 - 375 4.9e-08 PPR repeat family
PPR_2 PF13041 399 - 447 1.7e-10 PPR repeat family
PPR_1 PF12854 430 - 459 4e-08 PPR repeat
PPR_long PF17177 438 - 591 3.9e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 468 - 506 1.7e-07 PPR repeat family
PPR_3 PF13812 468 - 515 1.8e-08 Pentatricopeptide repeat domain
PPR_3 PF13812 491 - 548 4.3e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 503 - 552 1.1e-12 PPR repeat family
PPR_1 PF12854 535 - 565 4.9e-07 PPR repeat
PPR_2 PF13041 538 - 587 9.4e-12 PPR repeat family
PPR_3 PF13812 561 - 618 3.5e-08 Pentatricopeptide repeat domain
PPR_long PF17177 561 - 687 2.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 573 - 622 7.2e-13 PPR repeat family
PPR_1 PF12854 606 - 634 1.2e-08 PPR repeat
PPR_2 PF13041 643 - 686 2e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024274)

Species Orthologous Gene IDs
malus_domestica MD14G1075600.v1.1
prunus_persica Prupe.1G189500_v2.0.a1
pyrus_communis pycom14g06420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 684, 1734
AccII CGCG 1 cut(s) 14
AciI CCGC 3 cut(s) 14, 31, 348
AclWI GGATC 2 cut(s) 1000, 1459
AcoI YGGCCR 1 cut(s) 715
AcsI RAATTY 4 cut(s) 36, 71, 508, 1367
AcuI CTGAAG 2 cut(s) 450, 1595
AdeI CACNNNGTG 1 cut(s) 778
AfaI GTAC 5 cut(s) 771, 1208, 1541, 1805, 2016
AfeI AGCGCT 1 cut(s) 1257
AfiI CCNNNNNNNGG 1 cut(s) 1357
AflIII ACRYGT 1 cut(s) 1595
AjiI CACGTC 2 cut(s) 1596, 1906
AloI GAACNNNNNNTCC 2 cut(s) 1949, 1981
AluBI AGCT 9 cut(s) 98, 157, 519, 538, 598, 877, 1053, 1579, 2119
AluI AGCT 9 cut(s) 98, 157, 519, 538, 598, 877, 1053, 1579, 2119
Alw21I GWGCWC 1 cut(s) 785
Alw26I GTCTC 2 cut(s) 854, 1807
AlwI GGATC 2 cut(s) 1000, 1459
Ama87I CYCGRG 1 cut(s) 203
Aor51HI AGCGCT 1 cut(s) 1257
AoxI GGCC 5 cut(s) 344, 715, 1120, 1400, 1855
ApaI GGGCCC 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 1106, 1636
ApoI RAATTY 4 cut(s) 36, 71, 508, 1367
Asp700I GAANNNNTTC 1 cut(s) 557
AspLEI GCGC 2 cut(s) 14, 1258
AspS9I GGNCC 4 cut(s) 344, 345, 1400, 1842
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 932
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 1842
AxyI CCTNAGG 1 cut(s) 2097
BaeGI GKGCMC 2 cut(s) 234, 348
BanII GRGCYC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 785
BbvI GCAGC 2 cut(s) 1093, 1623
BccI CCATC 5 cut(s) 860, 917, 955, 1771, 1862
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 854, 1807
BfaI CTAG 4 cut(s) 302, 1608, 1640, 1664
BfmI CTRYAG 4 cut(s) 99, 897, 1336, 1546
BfoI RGCGCY 1 cut(s) 1259
BglII AGATCT 2 cut(s) 832, 2090
BisI GCNGC 2 cut(s) 1107, 1637
BlsI GCNGC 2 cut(s) 1108, 1638
BmcAI AGTACT 1 cut(s) 1541
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 1842
BmeT110I CYCGRG 1 cut(s) 203
BmgBI CACGTC 2 cut(s) 1596, 1906
BmgT120I GGNCC 4 cut(s) 344, 345, 1400, 1842
BmiI GGNNCC 2 cut(s) 346, 1843
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 567
BpuEI CTTGAG 3 cut(s) 1079, 1498, 1910
BpuMI CCSGG 1 cut(s) 234
Bsa29I ATCGAT 1 cut(s) 1264
BsaJI CCNNGG 4 cut(s) 219, 325, 1110, 1356
BsaWI WCCGGW 2 cut(s) 182, 1822
BsaXI ACNNNNNCTCC 2 cut(s) 1949, 1979
Bsc4I CCNNNNNNNGG 1 cut(s) 1357
Bse118I RCCGGY 1 cut(s) 713
Bse1I ACTGG 4 cut(s) 573, 1711, 2022, 2066
Bse21I CCTNAGG 1 cut(s) 2097
Bse3DI GCAATG 4 cut(s) 173, 232, 1870, 1968
BseCI ATCGAT 1 cut(s) 1264
BseDI CCNNGG 4 cut(s) 219, 325, 1110, 1356
BseGI GGATG 4 cut(s) 756, 980, 1201, 1906
BseLI CCNNNNNNNGG 1 cut(s) 1357
BseMI GCAATG 4 cut(s) 173, 232, 1870, 1968
BseMII CTCAG 2 cut(s) 172, 2088
BseNI ACTGG 4 cut(s) 573, 1711, 2022, 2066
BseRI GAGGAG 2 cut(s) 169, 1131
BseSI GKGCMC 2 cut(s) 234, 348
BseXI GCAGC 2 cut(s) 1093, 1623
BsgI GTGCAG 1 cut(s) 72
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 567
BshFI GGCC 5 cut(s) 346, 717, 1122, 1402, 1857
BshVI ATCGAT 1 cut(s) 1264
BsiEI CGRYCG 1 cut(s) 567
BsiHKAI GWGCWC 1 cut(s) 785
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 4 cut(s) 183, 234, 714, 1823
BslFI GGGAC 2 cut(s) 1403, 1596
BslI CCNNNNNNNGG 1 cut(s) 1357
BsmAI GTCTC 2 cut(s) 854, 1807
BsmFI GGGAC 2 cut(s) 1403, 1596
BsmI GAATGC 1 cut(s) 2135
BsnI GGCC 5 cut(s) 346, 717, 1122, 1402, 1857
BsoBI CYCGRG 1 cut(s) 203
Bsp120I GGGCCC 1 cut(s) 344
Bsp1286I GDGCHC 3 cut(s) 234, 348, 785
Bsp1407I TGTACA 3 cut(s) 769, 1206, 1803
Bsp143I GATC 5 cut(s) 832, 1005, 1244, 1464, 2090
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 3 cut(s) 14, 31, 348
BspANI GGCC 5 cut(s) 346, 717, 1122, 1402, 1857
BspCNI CTCAG 2 cut(s) 171, 2089
BspDI ATCGAT 1 cut(s) 1264
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 1 cut(s) 1234
BspLI GGNNCC 2 cut(s) 346, 1843
BspPI GGATC 2 cut(s) 1000, 1459
BsrDI GCAATG 4 cut(s) 173, 232, 1870, 1968
BsrFI RCCGGY 1 cut(s) 713
BsrGI TGTACA 3 cut(s) 769, 1206, 1803
BsrI ACTGG 4 cut(s) 573, 1711, 2022, 2066
BssAI RCCGGY 1 cut(s) 713
BssECI CCNNGG 4 cut(s) 219, 325, 1110, 1356
BssMI GATC 5 cut(s) 832, 1005, 1244, 1464, 2090
BssT1I CCWWGG 3 cut(s) 219, 1110, 1356
Bst4CI ACNGT 5 cut(s) 47, 137, 146, 247, 295
Bst6I CTCTTC 4 cut(s) 329, 426, 615, 749
BstAPI GCANNNNNTGC 1 cut(s) 39
BstAUI TGTACA 3 cut(s) 769, 1206, 1803
BstC8I GCNNGC 3 cut(s) 121, 348, 1441
BstDEI CTNAG 9 cut(s) 158, 497, 594, 599, 796, 878, 957, 2057, 2097
BstDSI CCRYGG 1 cut(s) 219
BstENI CCTNNNNNAGG 1 cut(s) 1355
BstF5I GGATG 4 cut(s) 756, 980, 1201, 1906
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 1259
BstHHI GCGC 2 cut(s) 14, 1258
BstKTI GATC 5 cut(s) 835, 1008, 1247, 1467, 2093
BstMAI GTCTC 2 cut(s) 854, 1807
BstMBI GATC 5 cut(s) 832, 1005, 1244, 1464, 2090
BstMCI CGRYCG 1 cut(s) 567
BstMWI GCNNNNNNNGC 4 cut(s) 39, 95, 163, 356
BstNSI RCATGY 2 cut(s) 496, 1443
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 4 cut(s) 99, 897, 1336, 1546
BstSLI GKGCMC 2 cut(s) 234, 348
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 1093, 1623
BstX2I RGATCY 2 cut(s) 832, 2090
BstYI RGATCY 2 cut(s) 832, 2090
Bsu15I ATCGAT 1 cut(s) 1264
Bsu36I CCTNAGG 1 cut(s) 2097
BsuRI GGCC 5 cut(s) 346, 717, 1122, 1402, 1857
BsuTUI ATCGAT 1 cut(s) 1264
BtgI CCRYGG 1 cut(s) 219
BtgZI GCGATG 1 cut(s) 1790
BtrI CACGTC 2 cut(s) 1596, 1906
BtsCI GGATG 4 cut(s) 756, 980, 1201, 1906
BtsIMutI CAGTG 2 cut(s) 243, 1467
Cac8I GCNNGC 3 cut(s) 121, 348, 1441
CciI TCATGA 1 cut(s) 1234
CfoI GCGC 2 cut(s) 14, 1258
Cfr10I RCCGGY 1 cut(s) 713
Cfr13I GGNCC 4 cut(s) 344, 345, 1400, 1842
ClaI ATCGAT 1 cut(s) 1264
Csp6I GTAC 5 cut(s) 770, 1207, 1540, 1804, 2015
CspCI CAANNNNNGTGG 2 cut(s) 2094, 2129
CviAII CATG 9 cut(s) 173, 220, 493, 610, 1013, 1235, 1440, 1591, 2126
CviQI GTAC 5 cut(s) 770, 1207, 1540, 1804, 2015
DdeI CTNAG 9 cut(s) 158, 497, 594, 599, 796, 878, 957, 2057, 2097
DpnI GATC 5 cut(s) 834, 1007, 1246, 1466, 2092
DpnII GATC 5 cut(s) 832, 1005, 1244, 1464, 2090
DraI TTTAAA 1 cut(s) 1326
DraIII CACNNNGTG 1 cut(s) 778
EaeI YGGCCR 1 cut(s) 715
Eam1104I CTCTTC 4 cut(s) 329, 426, 615, 749
EarI CTCTTC 4 cut(s) 329, 426, 615, 749
Eco130I CCWWGG 3 cut(s) 219, 1110, 1356
Eco147I AGGCCT 1 cut(s) 1122
Eco24I GRGCYC 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 1842
Eco47III AGCGCT 1 cut(s) 1257
Eco57I CTGAAG 2 cut(s) 450, 1595
Eco81I CCTNAGG 1 cut(s) 2097
Eco88I CYCGRG 1 cut(s) 203
EcoNI CCTNNNNNAGG 1 cut(s) 1355
EcoO109I RGGNCCY 1 cut(s) 1842
EcoT14I CCWWGG 3 cut(s) 219, 1110, 1356
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 3 cut(s) 219, 1110, 1356
FaeI CATG 9 cut(s) 176, 223, 496, 613, 1016, 1238, 1443, 1594, 2129
FaqI GGGAC 2 cut(s) 1403, 1596
FatI CATG 9 cut(s) 172, 219, 492, 609, 1012, 1234, 1439, 1590, 2125
FauI CCCGC 1 cut(s) 355
FauNDI CATATG 2 cut(s) 1102, 1485
Fnu4HI GCNGC 2 cut(s) 1107, 1637
FokI GGATG 4 cut(s) 763, 987, 1208, 1913
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 2 cut(s) 1107, 1637
FspBI CTAG 4 cut(s) 302, 1608, 1640, 1664
GlaI GCGC 2 cut(s) 13, 1257
GluI GCNGC 2 cut(s) 1107, 1637
HaeII RGCGCY 1 cut(s) 1259
HaeIII GGCC 5 cut(s) 346, 717, 1122, 1402, 1857
HapII CCGG 4 cut(s) 183, 234, 714, 1823
HhaI GCGC 2 cut(s) 14, 1258
Hin1II CATG 9 cut(s) 176, 223, 496, 613, 1016, 1238, 1443, 1594, 2129
Hin6I GCGC 2 cut(s) 12, 1256
HinP1I GCGC 2 cut(s) 12, 1256
HincII GTYRAC 1 cut(s) 2030
HindII GTYRAC 1 cut(s) 2030
HindIII AAGCTT 3 cut(s) 536, 596, 875
HinfI GANTC 4 cut(s) 206, 480, 1480, 2053
HpaII CCGG 4 cut(s) 183, 234, 714, 1823
HphI GGTGA 1 cut(s) 932
Hpy166II GTNNAC 9 cut(s) 26, 271, 322, 772, 980, 1157, 1207, 1833, 2030
Hpy188I TCNGA 7 cut(s) 130, 329, 408, 1249, 1567, 1575, 1987
Hpy8I GTNNAC 9 cut(s) 26, 271, 322, 772, 980, 1157, 1207, 1833, 2030
HpyAV CCTTC 8 cut(s) 754, 812, 965, 1019, 1280, 1426, 1762, 2015
HpyCH4III ACNGT 5 cut(s) 47, 137, 146, 247, 295
HpyCH4IV ACGT 2 cut(s) 1595, 1905
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 95, 163, 356
HpyF3I CTNAG 9 cut(s) 158, 497, 594, 599, 796, 878, 957, 2057, 2097
HpySE526I ACGT 2 cut(s) 1595, 1905
Hsp92II CATG 9 cut(s) 176, 223, 496, 613, 1016, 1238, 1443, 1594, 2129
HspAI GCGC 2 cut(s) 12, 1256
Kzo9I GATC 5 cut(s) 832, 1005, 1244, 1464, 2090
LmnI GCTCC 1 cut(s) 2116
Lsp1109I GCAGC 2 cut(s) 1093, 1623
LweI GCATC 1 cut(s) 403
MaeI CTAG 4 cut(s) 302, 1608, 1640, 1664
MaeII ACGT 2 cut(s) 1595, 1905
MaeIII GTNAC 6 cut(s) 137, 185, 285, 1136, 1621, 2041
MalI GATC 5 cut(s) 834, 1007, 1246, 1466, 2092
MboI GATC 5 cut(s) 832, 1005, 1244, 1464, 2090
MboII GAAGA 9 cut(s) 69, 346, 443, 632, 766, 827, 1262, 1282, 1501
MfeI CAATTG 4 cut(s) 522, 737, 1222, 1787
MflI RGATCY 2 cut(s) 832, 2090
MhlI GDGCHC 3 cut(s) 234, 348, 785
MlyI GAGTC 2 cut(s) 215, 1489
MmeI TCCRAC 2 cut(s) 1648, 2060
MroXI GAANNNNTTC 1 cut(s) 557
MspI CCGG 4 cut(s) 183, 234, 714, 1823
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 4 cut(s) 522, 737, 1222, 1787
Mva1269I GAATGC 1 cut(s) 2135
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 4 cut(s) 39, 95, 163, 356
NciI CCSGG 1 cut(s) 234
NcoI CCATGG 1 cut(s) 219
NdeI CATATG 2 cut(s) 1102, 1485
NdeII GATC 5 cut(s) 832, 1005, 1244, 1464, 2090
NlaIII CATG 9 cut(s) 176, 223, 496, 613, 1016, 1238, 1443, 1594, 2129
NlaIV GGNNCC 2 cut(s) 346, 1843
NmuCI GTSAC 2 cut(s) 285, 1621
NspI RCATGY 2 cut(s) 496, 1443
PaeI GCATGC 1 cut(s) 1443
PaeR7I CTCGAG 1 cut(s) 203
PagI TCATGA 1 cut(s) 1234
PceI AGGCCT 1 cut(s) 1122
PctI GAATGC 1 cut(s) 2135
PdmI GAANNNNTTC 1 cut(s) 557
PfeI GAWTC 2 cut(s) 480, 2053
PkrI GCNGC 2 cut(s) 1108, 1638
PleI GAGTC 2 cut(s) 214, 1488
PpsI GAGTC 2 cut(s) 214, 1488
PpuMI RGGWCCY 1 cut(s) 1842
PsiI TTATAA 2 cut(s) 684, 1734
Psp5II RGGWCCY 1 cut(s) 1842
PspN4I GGNNCC 2 cut(s) 346, 1843
PspOMI GGGCCC 1 cut(s) 344
PspPI GGNCC 4 cut(s) 344, 345, 1400, 1842
PspPPI RGGWCCY 1 cut(s) 1842
PspXI VCTCGAGB 1 cut(s) 203
PsuI RGATCY 2 cut(s) 832, 2090
RsaI GTAC 5 cut(s) 771, 1208, 1541, 1805, 2016
RsaNI GTAC 5 cut(s) 770, 1207, 1540, 1804, 2015
SatI GCNGC 2 cut(s) 1107, 1637
Sau3AI GATC 5 cut(s) 832, 1005, 1244, 1464, 2090
Sau96I GGNCC 4 cut(s) 344, 345, 1400, 1842
ScaI AGTACT 1 cut(s) 1541
SchI GAGTC 2 cut(s) 215, 1489
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 3 cut(s) 234, 348, 785
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 4 cut(s) 99, 897, 1336, 1546
Sfr274I CTCGAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 1842
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 4 cut(s) 203, 1058, 1477, 1889
SmoI CTYRAG 4 cut(s) 203, 1058, 1477, 1889
SphI GCATGC 1 cut(s) 1443
SseBI AGGCCT 1 cut(s) 1122
SsiI CCGC 3 cut(s) 14, 31, 348
SspI AATATT 2 cut(s) 950, 1738
SspMI CTAG 4 cut(s) 302, 1608, 1640, 1664
StuI AGGCCT 1 cut(s) 1122
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 3 cut(s) 219, 1110, 1356
TaaI ACNGT 5 cut(s) 47, 137, 146, 247, 295
TaiI ACGT 2 cut(s) 1598, 1908
TaqI TCGA 4 cut(s) 204, 476, 1264, 2049
TaqII GACCGA 2 cut(s) 581, 632
TatI WGTACW 5 cut(s) 769, 1206, 1539, 1803, 2014
TfiI GAWTC 2 cut(s) 480, 2053
TscAI CASTG 2 cut(s) 250, 1467
TseFI GTSAC 2 cut(s) 285, 1621
TseI GCWGC 2 cut(s) 1106, 1636
Tsp45I GTSAC 2 cut(s) 285, 1621
TspDTI ATGAA 9 cut(s) 69, 129, 347, 767, 867, 1001, 1502, 1744, 2142
TspGWI ACGGA 2 cut(s) 1457, 1714
TspRI CASTG 2 cut(s) 250, 1467
VpaK11BI GGWCC 1 cut(s) 1842
XagI CCTNNNNNAGG 1 cut(s) 1355
XapI RAATTY 4 cut(s) 36, 71, 508, 1367
XceI RCATGY 2 cut(s) 496, 1443
XhoI CTCGAG 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 557
XspI CTAG 4 cut(s) 302, 1608, 1640, 1664
ZrmI AGTACT 1 cut(s) 1541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.