pycom14g06420

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0024274
Physical Location & Seq
Reverse (-)
6327372 .. 6329516
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g06420.1

Sequence Viewer

Length: 2145 bp
ATGACAGTTGGTGCGGTTAGTTGTTCACACCGCAGAATTTGCAACTGTTATTTTACTCCTAATTTTGTCAAATTTTCTTCATTATCTGCACTTAAAGCTACAGACTTTACTTATGAAGCAAACAATTCCGATGACTGTAACTGCCGCGAATTACAGCTCAGTATGCAATGCCATGCCTCCTCCGGTAACTTTGTGAAAGCCCTAGACTCTTTGAACTCCATGGGCAATGTGCCTGGCAAACCCACGGTGTATGATTTCAATGCTTTGCTTTACTCTTACTTGAAGTCACAGACTGTATTGCTAGACAATGTGGTTCAGGTTTACCACGGAATGAAGAGATTCGGGCCCGCTCCAAATGCTTCCACTTTCAATGCACTTTTGAATGGTATGCTATCACTTGGTCGTCTGAAAGATGCTCATATGATTGCTGAAGAGATGTTTGATGGTGGGTTTTTACCCTCGTTTACTTCTTTGTCAAGAATCTTGAAAAACATGCTTAGAGTTGGGAATTTAGTTAGCTCAATGGGTGTTTTTAAACTTATGTTGAGGTTGAAGTATTTCCCGACCGAACCCAGTTTGTGTTTGTTGATTTCTAAGCTTAGTAAAGCCATGATGACTGAAGAGGCGTGGTTTGTGTGCTATGCTCTTATGCGTAAGGGTCATTTTTTCGGTGCTTATGTTTATAACCCTATGCTTTGGGCGTTGTGTAAGACCGGCCAGAGCAATAATGCTTTGCAATTGTTTTATTGGATGAAGAGGAAGGGCGTTGTACATAATGTGTGCTCTTATACTGCTTTAGTTTATGGGTTTGGTAGAGAAGGTTTGTGGAGAGATCTTCTTTGCTGTTTAGATGAAATGGAGACTGATGGGTGTAAGCCTAGTGCGATAACATACACTATAGTTATTAAATCTCTTTGTGGTGATGGGAGGATTGCAGAGGCGTCAGAATATTTGGCTAAGATGGAAAGGGAAGGATGTGAACCAGATATGACCACATACAATGTGATCCTTCATGCACTTTGTATTCAAGATAGAGCGAATGACATTTTCAGCTTACTTGAGATGATTGAGAACAAAGGATTTTCTCCCAACGCGTACACATATGCTGCCGTGGGAGGAGGCCTGTTAAAAACAGGTAACATTGGGATTGCTTGTGAACTATTGCTTGATGTGATTACAGAGGGCAACTATGTGGATGTTGTTGTGTACAATATATACTTCAATTGTTTGTGTCATGAGAATAGATCAGAAGAAGCGCTATATGGATTGAAGAAAATGATTGGAGAAGGTTTAATGCCAAGTAATGTGTCATACAACACAATTTTAAAGGGTATCTGTAGAGAAAATAACCTCTCCAAGGCTTTGAAATTCTTGGACTACTTTAAGTGGGACGAAAATGGGCCTGATGTGGTTTCCTTCAATACAATTTTGTCTGTGGCATGCAAACAGAAAAAGCGTTCAATGATCCGGAGGGTCTTGAGTCATATGAAGAATGGCGGTGTTCAGCCTAATGTTGTTAGTTTGAATTGTTTAATTCAGTACTTCTGTAGGGTTGAAAACTTTTCTGAATGTTTGAAGCTCTTGGATTACATGACGTGCAGTGGTTCTAGTCCCACTATTGTCACTTTTAATCTGTTGCTAGACAGACTTTGTAAGAATGGTCTAGTTGGAATTGCAGAACGGGTTTTTAAGCAACTACGGAATACTGGATTTTTTCCTGATACAATTTCTTATAATATTCTTATTCACGCCTTCATTAAAGAGGGCAATAAGGCAATGGTTAATCAATTGGTTAGTGATATGTACAACCAGAGACTAAAACCAGATCTGTTTACATATGGGTCCTTAATTAGTGGCCTTTGCAAGGATGGAAAGGTATCTGTTGCTCTTGAGTTGAGGGATGACGTGGTAGAGAATGGGCTTACTCCAAGCATAACAATCTACAATACCTTATTGGAGGCAGTGTTCAAGAGGGGTGCTTTTTCAGACATTTTATCATTATTGAAAAATCTTGTACTGGAAGGCTGTCAACCGAATGAGGTAACTTTTGAGATTCTTAACCGACCAGTATTCAAAAGTTGGATAAAGAGATCTCCTGAGGTTTCAAATCTTGTGGAGCTTGTGCATGAATGCAAAGTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

715

Amino Acids

80.07

Weight (kDa)

8.2

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 226 - 271 3.6e-10 PPR repeat family
PPR_3 PF13812 250 - 304 1.6e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 259 - 306 7.9e-11 PPR repeat family
PPR_3 PF13812 283 - 339 2.8e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 289 - 322 4e-08 PPR repeat
PPR_2 PF13041 301 - 341 2.4e-09 PPR repeat family
PPR_3 PF13812 318 - 370 3.6e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 332 - 371 1.2e-07 PPR repeat family
PPR_2 PF13041 399 - 447 3e-10 PPR repeat family
PPR_1 PF12854 430 - 459 2.6e-07 PPR repeat
PPR_long PF17177 439 - 591 5.7e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 468 - 507 7e-08 PPR repeat family
PPR_3 PF13812 468 - 515 5.8e-09 Pentatricopeptide repeat domain
PPR_3 PF13812 491 - 548 2.1e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 503 - 552 5.7e-13 PPR repeat family
PPR_1 PF12854 535 - 565 4.9e-07 PPR repeat
PPR_2 PF13041 538 - 585 2.7e-11 PPR repeat family
PPR_3 PF13812 561 - 618 3.9e-08 Pentatricopeptide repeat domain
PPR_long PF17177 561 - 688 7.9e-08 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 573 - 622 4.9e-13 PPR repeat family
PPR_1 PF12854 606 - 634 1.8e-09 PPR repeat
PPR_2 PF13041 643 - 686 1.2e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024274)

Species Orthologous Gene IDs
malus_domestica MD14G1075600.v1.1
prunus_persica Prupe.1G189500_v2.0.a1
pyrus_communis pycom14g06420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 684, 1734
AccBSI CCGCTC 1 cut(s) 350
AccII CGCG 2 cut(s) 147, 1094
AccIII TCCGGA 1 cut(s) 1467
AciI CCGC 5 cut(s) 14, 31, 145, 348, 1497
AclWI GGATC 2 cut(s) 1000, 1459
AcoI YGGCCR 1 cut(s) 715
AcsI RAATTY 4 cut(s) 36, 71, 508, 1367
AcuI CTGAAG 2 cut(s) 450, 639
AcyI GRCGYC 1 cut(s) 941
AfaI GTAC 6 cut(s) 771, 1097, 1208, 1541, 1805, 2016
AfeI AGCGCT 1 cut(s) 1257
AfiI CCNNNNNNNGG 2 cut(s) 1357, 1864
AflIII ACRYGT 1 cut(s) 1092
AjiI CACGTC 2 cut(s) 1596, 1906
AjnI CCWGG 1 cut(s) 232
AloI GAACNNNNNNTCC 2 cut(s) 1949, 1981
AluBI AGCT 7 cut(s) 98, 157, 519, 598, 1053, 1579, 2119
AluI AGCT 7 cut(s) 98, 157, 519, 598, 1053, 1579, 2119
Alw21I GWGCWC 1 cut(s) 785
Alw26I GTCTC 2 cut(s) 854, 1807
AlwI GGATC 2 cut(s) 1000, 1459
Aor13HI TCCGGA 1 cut(s) 1467
Aor51HI AGCGCT 1 cut(s) 1257
AoxI GGCC 5 cut(s) 344, 715, 1120, 1400, 1855
ApaI GGGCCC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 1106
ApoI RAATTY 4 cut(s) 36, 71, 508, 1367
Asp700I GAANNNNTTC 2 cut(s) 338, 557
AspLEI GCGC 1 cut(s) 1258
AspS9I GGNCC 4 cut(s) 344, 345, 1400, 1842
AsuHPI GGTGA 1 cut(s) 932
AvaII GGWCC 1 cut(s) 1842
AxyI CCTNAGG 1 cut(s) 2097
BaeGI GKGCMC 1 cut(s) 348
BanII GRGCYC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 785
BbvI GCAGC 1 cut(s) 1093
BccI CCATC 5 cut(s) 437, 860, 917, 955, 1862
BceAI ACGGC 1 cut(s) 1094
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 854, 1807
BfaI CTAG 6 cut(s) 203, 302, 879, 1608, 1640, 1664
BfmI CTRYAG 4 cut(s) 99, 897, 1336, 1546
BfoI RGCGCY 1 cut(s) 1259
BglII AGATCT 3 cut(s) 832, 1825, 2090
BisI GCNGC 2 cut(s) 145, 1107
BlsI GCNGC 2 cut(s) 146, 1108
BmcAI AGTACT 1 cut(s) 1541
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 1842
BmgBI CACGTC 2 cut(s) 1596, 1906
BmgT120I GGNCC 4 cut(s) 344, 345, 1400, 1842
BmiI GGNNCC 2 cut(s) 346, 1843
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 567
BpuEI CTTGAG 3 cut(s) 1079, 1498, 1910
BsaHI GRCGYC 1 cut(s) 941
BsaJI CCNNGG 5 cut(s) 219, 243, 325, 1110, 1356
BsaWI WCCGGW 2 cut(s) 182, 1467
BsaXI ACNNNNNCTCC 2 cut(s) 1949, 1979
Bsc4I CCNNNNNNNGG 2 cut(s) 1357, 1864
Bse118I RCCGGY 1 cut(s) 713
Bse1I ACTGG 4 cut(s) 573, 1711, 2022, 2066
Bse21I CCTNAGG 1 cut(s) 2097
Bse3DI GCAATG 3 cut(s) 173, 232, 1782
BseAI TCCGGA 1 cut(s) 1467
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 5 cut(s) 219, 243, 325, 1110, 1356
BseGI GGATG 5 cut(s) 756, 980, 1201, 1873, 1906
BseLI CCNNNNNNNGG 2 cut(s) 1357, 1864
BseMI GCAATG 3 cut(s) 173, 232, 1782
BseMII CTCAG 2 cut(s) 172, 2088
BseNI ACTGG 4 cut(s) 573, 1711, 2022, 2066
BseRI GAGGAG 2 cut(s) 169, 1131
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 1 cut(s) 1093
BsgI GTGCAG 2 cut(s) 72, 1618
Bsh1236I CGCG 2 cut(s) 147, 1094
Bsh1285I CGRYCG 1 cut(s) 567
BshFI GGCC 5 cut(s) 346, 717, 1122, 1402, 1857
BsiEI CGRYCG 1 cut(s) 567
BsiHKAI GWGCWC 1 cut(s) 785
BsiSI CCGG 3 cut(s) 183, 714, 1468
BslFI GGGAC 2 cut(s) 1403, 1596
BslI CCNNNNNNNGG 2 cut(s) 1357, 1864
BsmAI GTCTC 2 cut(s) 854, 1807
BsmFI GGGAC 2 cut(s) 1403, 1596
BsmI GAATGC 1 cut(s) 2135
BsnI GGCC 5 cut(s) 346, 717, 1122, 1402, 1857
Bsp120I GGGCCC 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 348, 785
Bsp13I TCCGGA 1 cut(s) 1467
Bsp1407I TGTACA 3 cut(s) 769, 1206, 1803
Bsp143I GATC 6 cut(s) 832, 1005, 1244, 1464, 1825, 2090
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 5 cut(s) 14, 31, 145, 348, 1497
BspANI GGCC 5 cut(s) 346, 717, 1122, 1402, 1857
BspCNI CTCAG 2 cut(s) 171, 2089
BspEI TCCGGA 1 cut(s) 1467
BspFNI CGCG 2 cut(s) 147, 1094
BspHI TCATGA 1 cut(s) 1234
BspLI GGNNCC 2 cut(s) 346, 1843
BspPI GGATC 2 cut(s) 1000, 1459
BsrBI CCGCTC 1 cut(s) 350
BsrDI GCAATG 3 cut(s) 173, 232, 1782
BsrFI RCCGGY 1 cut(s) 713
BsrGI TGTACA 3 cut(s) 769, 1206, 1803
BsrI ACTGG 4 cut(s) 573, 1711, 2022, 2066
BssAI RCCGGY 1 cut(s) 713
BssECI CCNNGG 5 cut(s) 219, 243, 325, 1110, 1356
BssMI GATC 6 cut(s) 832, 1005, 1244, 1464, 1825, 2090
BssNI GRCGYC 1 cut(s) 941
BssT1I CCWWGG 2 cut(s) 219, 1356
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 5 cut(s) 7, 47, 137, 247, 295
Bst6I CTCTTC 4 cut(s) 329, 426, 615, 749
BstACI GRCGYC 1 cut(s) 941
BstAPI GCANNNNNTGC 1 cut(s) 39
BstAUI TGTACA 3 cut(s) 769, 1206, 1803
BstC8I GCNNGC 2 cut(s) 348, 1441
BstDEI CTNAG 6 cut(s) 158, 497, 594, 599, 957, 2097
BstDSI CCRYGG 4 cut(s) 219, 243, 325, 1110
BstENI CCTNNNNNAGG 2 cut(s) 1355, 1862
BstF5I GGATG 5 cut(s) 756, 980, 1201, 1873, 1906
BstFNI CGCG 2 cut(s) 147, 1094
BstH2I RGCGCY 1 cut(s) 1259
BstHHI GCGC 1 cut(s) 1258
BstKTI GATC 6 cut(s) 835, 1008, 1247, 1467, 1828, 2093
BstMAI GTCTC 2 cut(s) 854, 1807
BstMBI GATC 6 cut(s) 832, 1005, 1244, 1464, 1825, 2090
BstMCI CGRYCG 1 cut(s) 567
BstMWI GCNNNNNNNGC 4 cut(s) 39, 95, 163, 356
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 2 cut(s) 496, 1443
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 4 cut(s) 99, 897, 1336, 1546
BstSLI GKGCMC 1 cut(s) 348
BstUI CGCG 2 cut(s) 147, 1094
BstV1I GCAGC 1 cut(s) 1093
BstX2I RGATCY 3 cut(s) 832, 1825, 2090
BstYI RGATCY 3 cut(s) 832, 1825, 2090
Bsu36I CCTNAGG 1 cut(s) 2097
BsuRI GGCC 5 cut(s) 346, 717, 1122, 1402, 1857
BtgI CCRYGG 4 cut(s) 219, 243, 325, 1110
BtrI CACGTC 2 cut(s) 1596, 1906
BtsCI GGATG 5 cut(s) 756, 980, 1201, 1873, 1906
BtsI GCAGTG 2 cut(s) 1606, 1968
BtsIMutI CAGTG 2 cut(s) 1606, 1968
Cac8I GCNNGC 2 cut(s) 348, 1441
CciI TCATGA 1 cut(s) 1234
CfoI GCGC 1 cut(s) 1258
Cfr10I RCCGGY 1 cut(s) 713
Cfr13I GGNCC 4 cut(s) 344, 345, 1400, 1842
CseI GACGC 1 cut(s) 930
Csp6I GTAC 6 cut(s) 770, 1096, 1207, 1540, 1804, 2015
CspCI CAANNNNNGTGG 2 cut(s) 2094, 2129
CviAII CATG 9 cut(s) 173, 220, 493, 610, 1013, 1235, 1440, 1591, 2126
CviQI GTAC 6 cut(s) 770, 1096, 1207, 1540, 1804, 2015
DdeI CTNAG 6 cut(s) 158, 497, 594, 599, 957, 2097
DpnI GATC 6 cut(s) 834, 1007, 1246, 1466, 1827, 2092
DpnII GATC 6 cut(s) 832, 1005, 1244, 1464, 1825, 2090
DraI TTTAAA 2 cut(s) 535, 1326
EaeI YGGCCR 1 cut(s) 715
Eam1104I CTCTTC 4 cut(s) 329, 426, 615, 749
EarI CTCTTC 4 cut(s) 329, 426, 615, 749
Eco130I CCWWGG 2 cut(s) 219, 1356
Eco147I AGGCCT 1 cut(s) 1122
Eco24I GRGCYC 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 1842
Eco47III AGCGCT 1 cut(s) 1257
Eco57I CTGAAG 2 cut(s) 450, 639
Eco81I CCTNAGG 1 cut(s) 2097
EcoNI CCTNNNNNAGG 2 cut(s) 1355, 1862
EcoO109I RGGNCCY 1 cut(s) 1842
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 219, 1356
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 2 cut(s) 219, 1356
FaeI CATG 9 cut(s) 176, 223, 496, 613, 1016, 1238, 1443, 1594, 2129
FaqI GGGAC 2 cut(s) 1403, 1596
FatI CATG 9 cut(s) 172, 219, 492, 609, 1012, 1234, 1439, 1590, 2125
FauI CCCGC 1 cut(s) 355
FauNDI CATATG 4 cut(s) 420, 1102, 1485, 1837
Fnu4HI GCNGC 2 cut(s) 145, 1107
FokI GGATG 5 cut(s) 763, 987, 1208, 1880, 1913
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 2 cut(s) 145, 1107
FspBI CTAG 6 cut(s) 203, 302, 879, 1608, 1640, 1664
GlaI GCGC 1 cut(s) 1257
GluI GCNGC 2 cut(s) 145, 1107
HaeII RGCGCY 1 cut(s) 1259
HaeIII GGCC 5 cut(s) 346, 717, 1122, 1402, 1857
HapII CCGG 3 cut(s) 183, 714, 1468
HgaI GACGC 1 cut(s) 930
HhaI GCGC 1 cut(s) 1258
Hin1I GRCGYC 1 cut(s) 941
Hin1II CATG 9 cut(s) 176, 223, 496, 613, 1016, 1238, 1443, 1594, 2129
Hin6I GCGC 1 cut(s) 1256
HinP1I GCGC 1 cut(s) 1256
HincII GTYRAC 1 cut(s) 2030
HindII GTYRAC 1 cut(s) 2030
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 5 cut(s) 206, 339, 480, 1480, 2053
HpaII CCGG 3 cut(s) 183, 714, 1468
HphI GGTGA 1 cut(s) 932
Hpy166II GTNNAC 9 cut(s) 26, 322, 465, 980, 1098, 1157, 1207, 1833, 2030
Hpy188I TCNGA 6 cut(s) 130, 408, 946, 1249, 1567, 1987
Hpy8I GTNNAC 9 cut(s) 26, 322, 465, 980, 1098, 1157, 1207, 1833, 2030
HpyAV CCTTC 8 cut(s) 754, 812, 965, 1019, 1280, 1426, 1762, 2015
HpyCH4III ACNGT 5 cut(s) 7, 47, 137, 247, 295
HpyCH4IV ACGT 2 cut(s) 1595, 1905
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 95, 163, 356
HpyF3I CTNAG 6 cut(s) 158, 497, 594, 599, 957, 2097
HpySE526I ACGT 2 cut(s) 1595, 1905
Hsp92I GRCGYC 1 cut(s) 941
Hsp92II CATG 9 cut(s) 176, 223, 496, 613, 1016, 1238, 1443, 1594, 2129
HspAI GCGC 1 cut(s) 1256
Kpn2I TCCGGA 1 cut(s) 1467
Kzo9I GATC 6 cut(s) 832, 1005, 1244, 1464, 1825, 2090
LmnI GCTCC 2 cut(s) 355, 2116
Lsp1109I GCAGC 1 cut(s) 1093
LweI GCATC 1 cut(s) 403
MaeI CTAG 6 cut(s) 203, 302, 879, 1608, 1640, 1664
MaeII ACGT 2 cut(s) 1595, 1905
MaeIII GTNAC 6 cut(s) 137, 185, 285, 1136, 1621, 2041
MalI GATC 6 cut(s) 834, 1007, 1246, 1466, 1827, 2092
MbiI CCGCTC 1 cut(s) 350
MboI GATC 6 cut(s) 832, 1005, 1244, 1464, 1825, 2090
MboII GAAGA 9 cut(s) 69, 346, 443, 632, 766, 827, 1262, 1282, 1501
MfeI CAATTG 3 cut(s) 737, 1222, 1787
MflI RGATCY 3 cut(s) 832, 1825, 2090
MhlI GDGCHC 2 cut(s) 348, 785
MluI ACGCGT 1 cut(s) 1092
MlyI GAGTC 2 cut(s) 200, 1489
MmeI TCCRAC 2 cut(s) 1648, 2060
MroI TCCGGA 1 cut(s) 1467
MroXI GAANNNNTTC 2 cut(s) 338, 557
MspI CCGG 3 cut(s) 183, 714, 1468
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 3 cut(s) 737, 1222, 1787
Mva1269I GAATGC 1 cut(s) 2135
MvaI CCWGG 1 cut(s) 234
MvnI CGCG 2 cut(s) 147, 1094
MwoI GCNNNNNNNGC 4 cut(s) 39, 95, 163, 356
NcoI CCATGG 1 cut(s) 219
NdeI CATATG 4 cut(s) 420, 1102, 1485, 1837
NdeII GATC 6 cut(s) 832, 1005, 1244, 1464, 1825, 2090
NlaIII CATG 9 cut(s) 176, 223, 496, 613, 1016, 1238, 1443, 1594, 2129
NlaIV GGNNCC 2 cut(s) 346, 1843
NmuCI GTSAC 2 cut(s) 285, 1621
NspI RCATGY 2 cut(s) 496, 1443
PaeI GCATGC 1 cut(s) 1443
PagI TCATGA 1 cut(s) 1234
PceI AGGCCT 1 cut(s) 1122
PctI GAATGC 1 cut(s) 2135
PdmI GAANNNNTTC 2 cut(s) 338, 557
PfeI GAWTC 3 cut(s) 339, 480, 2053
PkrI GCNGC 2 cut(s) 146, 1108
PleI GAGTC 2 cut(s) 200, 1488
PpsI GAGTC 2 cut(s) 200, 1488
PpuMI RGGWCCY 1 cut(s) 1842
PsiI TTATAA 2 cut(s) 684, 1734
Psp5II RGGWCCY 1 cut(s) 1842
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 2 cut(s) 346, 1843
PspOMI GGGCCC 1 cut(s) 344
PspPI GGNCC 4 cut(s) 344, 345, 1400, 1842
PspPPI RGGWCCY 1 cut(s) 1842
PsuI RGATCY 3 cut(s) 832, 1825, 2090
RsaI GTAC 6 cut(s) 771, 1097, 1208, 1541, 1805, 2016
RsaNI GTAC 6 cut(s) 770, 1096, 1207, 1540, 1804, 2015
SatI GCNGC 2 cut(s) 145, 1107
Sau3AI GATC 6 cut(s) 832, 1005, 1244, 1464, 1825, 2090
Sau96I GGNCC 4 cut(s) 344, 345, 1400, 1842
ScaI AGTACT 1 cut(s) 1541
SchI GAGTC 2 cut(s) 200, 1489
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 2 cut(s) 348, 785
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 4 cut(s) 99, 897, 1336, 1546
SinI GGWCC 1 cut(s) 1842
SmlI CTYRAG 3 cut(s) 1058, 1477, 1889
SmoI CTYRAG 3 cut(s) 1058, 1477, 1889
SphI GCATGC 1 cut(s) 1443
SseBI AGGCCT 1 cut(s) 1122
SsiI CCGC 5 cut(s) 14, 31, 145, 348, 1497
SspI AATATT 2 cut(s) 950, 1738
SspMI CTAG 6 cut(s) 203, 302, 879, 1608, 1640, 1664
StuI AGGCCT 1 cut(s) 1122
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 2 cut(s) 219, 1356
TaaI ACNGT 5 cut(s) 7, 47, 137, 247, 295
TaiI ACGT 2 cut(s) 1598, 1908
TaqII GACCGA 1 cut(s) 581
TatI WGTACW 5 cut(s) 769, 1206, 1539, 1803, 2014
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 3 cut(s) 339, 480, 2053
TscAI CASTG 2 cut(s) 1606, 1968
TseFI GTSAC 2 cut(s) 285, 1621
TseI GCWGC 1 cut(s) 1106
Tsp45I GTSAC 2 cut(s) 285, 1621
TspDTI ATGAA 9 cut(s) 69, 129, 347, 767, 867, 1001, 1502, 1744, 2142
TspGWI ACGGA 2 cut(s) 342, 1714
TspRI CASTG 2 cut(s) 1606, 1968
VpaK11BI GGWCC 1 cut(s) 1842
XagI CCTNNNNNAGG 2 cut(s) 1355, 1862
XapI RAATTY 4 cut(s) 36, 71, 508, 1367
XceI RCATGY 2 cut(s) 496, 1443
XmnI GAANNNNTTC 2 cut(s) 338, 557
XspI CTAG 6 cut(s) 203, 302, 879, 1608, 1640, 1664
ZrmI AGTACT 1 cut(s) 1541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.