MD14G1118800.v1.1

ABC transporter C family member 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0022332
Physical Location & Seq
Reverse (-)
19329982 .. 19330797
816 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1118800.v1.1.491

Sequence Viewer

Length: 816 bp
ATGGGGGAGGGTTTCGGGACCTTATTTTGCAGCAGTTCTAACTGTTCCACTGAGTCTAGAACTGAATGCACTTCTGGATTTTTATCTGTCTTCGATCCAGATTCGTGTCTCAACAATATTTTTATCATAGCAGTTGACAACTTTATCCTATTTATCTTGTTATGTTTCTTCATATATAGAATCTCATCAAAGAAGATTATAGCACCATCAGACTCTCACACCTTCCATGCATTGTCAATTGTCTCGGCCAGCCTTAATTCCGGTTTGGCTTTCGCCTACTTGGGGTTTGGGATATGGAAAAACGTCGACAAAGTTAACACAGATCAGACTGTTTTACCTCTCCATGGATGGCTAGTCTTGTTCTTTCAAGGGTTCACATGGTTGCTTTTGAGTTTAACCATAACCCTAAAGAAGCCACACTCTCCACACATTGTGATAGCAAAAGCTTTTTCGATTCTTGCCTTCTTGCTTGCAGTTTTTATTTGCAGTTCGTCAATTTGGGAAGCTGTTGTGGATGAGGCAGTAACCGTTAATGTTGTTTTAAACATTTTATATTTCCCCGGGTCAATACTCTTGCTCTTTAGTGCATTTCAAGGAAGCAATATATTTGCAAAGGGTGATCTAGAACTGCATGACGATGCTTTCTACGCACCTTTGCAAGGGGAGGAATCAGATGTCAGAGATCAAATCAGCTCAAATGACAACGTAACCCCTTTTGCAAAAGCCAGGTTATTTAGTACATTGTCATTTTGGTGGTTGAATCCATTGATGAAGAAAGGCAAGAAAAAGCTTCTTCAGAATGAAGTTATTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

272

Amino Acids

30.09

Weight (kDa)

5.83

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABCC10_N PF24358 3 - 201 3.7e-70 ABCC10 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022332)

Species Orthologous Gene IDs
malus_domestica MD14G1118800.v1.1
rosa_chinensis RchiOBHm_Chr7g0195741
rosa_samantha Rh4BG127300 Rh7CG159200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 779
AdeI CACNNNGTG 1 cut(s) 433
AfaI GTAC 1 cut(s) 739
AfiI CCNNNNNNNGG 3 cut(s) 282, 344, 659
AgsI TTSAA 3 cut(s) 368, 593, 760
AjnI CCWGG 1 cut(s) 725
AluBI AGCT 4 cut(s) 446, 506, 693, 790
AluI AGCT 4 cut(s) 446, 506, 693, 790
Alw26I GTCTC 2 cut(s) 113, 247
AlwI GGATC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 807
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 2 cut(s) 561, 562
AsuHPI GGTGA 1 cut(s) 629
AvaI CYCGRG 1 cut(s) 560
AvaII GGWCC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 42
BccI CCATC 2 cut(s) 214, 342
BciT130I CCWGG 1 cut(s) 727
BcnI CCSGG 2 cut(s) 561, 562
BcoDI GTCTC 2 cut(s) 113, 247
BfaI CTAG 3 cut(s) 57, 353, 623
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 3 cut(s) 561, 562, 727
Bme18I GGWCC 1 cut(s) 18
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 3 cut(s) 561, 562, 727
BmsI GCATC 1 cut(s) 628
BpiI GAAGAC 1 cut(s) 82
BpuMI CCSGG 2 cut(s) 561, 562
BsaBI GATNNNNATC 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 343, 559, 560
BsaWI WCCGGW 1 cut(s) 260
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 344, 659
Bse8I GATNNNNATC 1 cut(s) 82
BseBI CCWGG 1 cut(s) 727
BseDI CCNNGG 3 cut(s) 343, 559, 560
BseGI GGATG 2 cut(s) 353, 520
BseJI GATNNNNATC 1 cut(s) 82
BseLI CCNNNNNNNGG 3 cut(s) 282, 344, 659
BseMII CTCAG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 42
BshFI GGCC 1 cut(s) 248
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 2 cut(s) 261, 561
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 3 cut(s) 282, 344, 659
BsmAI GTCTC 2 cut(s) 113, 247
BsmFI GGGAC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 1 cut(s) 248
BsoBI CYCGRG 1 cut(s) 560
Bsp143I GATC 4 cut(s) 94, 322, 619, 682
Bsp19I CCATGG 1 cut(s) 343
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 89
BssECI CCNNGG 3 cut(s) 343, 559, 560
BssMI GATC 4 cut(s) 94, 322, 619, 682
BssT1I CCWWGG 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 727
Bst4CI ACNGT 3 cut(s) 44, 331, 529
BstC8I GCNNGC 2 cut(s) 250, 471
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 343
BstENI CCTNNNNNAGG 1 cut(s) 657
BstF5I GGATG 2 cut(s) 353, 520
BstKTI GATC 4 cut(s) 97, 325, 622, 685
BstMAI GTCTC 2 cut(s) 113, 247
BstMBI GATC 4 cut(s) 94, 322, 619, 682
BstMWI GCNNNNNNNGC 1 cut(s) 647
BstNI CCWGG 1 cut(s) 727
BstSCI CCNGG 3 cut(s) 559, 560, 725
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 248
BtgI CCRYGG 1 cut(s) 343
BtsCI GGATG 2 cut(s) 353, 520
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 250, 471
Cfr13I GGNCC 1 cut(s) 18
Cfr9I CCCGGG 1 cut(s) 560
Csp6I GTAC 1 cut(s) 738
CviAII CATG 4 cut(s) 227, 344, 378, 632
CviQI GTAC 1 cut(s) 738
DdeI CTNAG 1 cut(s) 51
DpnI GATC 4 cut(s) 96, 324, 621, 684
DpnII GATC 4 cut(s) 94, 322, 619, 682
DraI TTTAAA 1 cut(s) 543
DraIII CACNNNGTG 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 246
Eco130I CCWWGG 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 779
Eco88I CYCGRG 1 cut(s) 560
EcoNI CCTNNNNNAGG 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 725
EcoT14I CCWWGG 1 cut(s) 343
EcoT22I ATGCAT 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 4 cut(s) 230, 347, 381, 635
FaqI GGGAC 1 cut(s) 31
FatI CATG 4 cut(s) 226, 343, 377, 631
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 2 cut(s) 360, 527
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 3 cut(s) 57, 353, 623
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 248
HapII CCGG 2 cut(s) 261, 561
Hin1II CATG 4 cut(s) 230, 347, 381, 635
HincII GTYRAC 3 cut(s) 136, 307, 316
HindII GTYRAC 3 cut(s) 136, 307, 316
HindIII AAGCTT 2 cut(s) 444, 788
HinfI GANTC 7 cut(s) 53, 101, 180, 212, 454, 668, 760
HpaI GTTAAC 1 cut(s) 316
HpaII CCGG 2 cut(s) 261, 561
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 4 cut(s) 136, 307, 316, 375
Hpy188I TCNGA 5 cut(s) 211, 327, 673, 680, 798
Hpy188III TCNNGA 5 cut(s) 16, 57, 75, 98, 623
Hpy8I GTNNAC 4 cut(s) 136, 307, 316, 375
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 232, 472
HpyCH4III ACNGT 3 cut(s) 44, 331, 529
HpyCH4IV ACGT 2 cut(s) 303, 705
HpyF10VI GCNNNNNNNGC 1 cut(s) 647
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 2 cut(s) 303, 705
Hsp92II CATG 4 cut(s) 230, 347, 381, 635
KspAI GTTAAC 1 cut(s) 316
Kzo9I GATC 4 cut(s) 94, 322, 619, 682
LpnPI CCDG 7 cut(s) 60, 111, 262, 274, 574, 712, 739
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 1 cut(s) 628
MaeI CTAG 3 cut(s) 57, 353, 623
MaeII ACGT 2 cut(s) 303, 705
MaeIII GTNAC 2 cut(s) 523, 706
MalI GATC 4 cut(s) 96, 324, 621, 684
MboI GATC 4 cut(s) 94, 322, 619, 682
MboII GAAGA 5 cut(s) 82, 160, 205, 784, 785
MfeI CAATTG 1 cut(s) 237
MluCI AATT 3 cut(s) 237, 256, 495
MlyI GAGTC 2 cut(s) 62, 206
MnlI CCTC 3 cut(s) 348, 511, 658
Mph1103I ATGCAT 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 807
MseI TTAA 5 cut(s) 255, 315, 395, 531, 542
MslI CAYNNNNRTG 2 cut(s) 636, 751
MspI CCGG 2 cut(s) 261, 561
MspR9I CCNGG 3 cut(s) 561, 562, 727
MunI CAATTG 1 cut(s) 237
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 1 cut(s) 727
MwoI GCNNNNNNNGC 1 cut(s) 647
NciI CCSGG 2 cut(s) 561, 562
NcoI CCATGG 1 cut(s) 343
NdeII GATC 4 cut(s) 94, 322, 619, 682
NlaIII CATG 4 cut(s) 230, 347, 381, 635
NlaIV GGNNCC 1 cut(s) 19
NmeAIII GCCGAG 1 cut(s) 224
NsiI ATGCAT 1 cut(s) 232
PctI GAATGC 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 5 cut(s) 101, 180, 454, 668, 760
PkrI GCNGC 1 cut(s) 32
PleI GAGTC 2 cut(s) 61, 206
PpsI GAGTC 2 cut(s) 61, 206
PpuMI RGGWCCY 1 cut(s) 18
Psp5II RGGWCCY 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 725
PspGI CCWGG 1 cut(s) 725
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 18
PspPPI RGGWCCY 1 cut(s) 18
RsaI GTAC 1 cut(s) 739
RsaNI GTAC 1 cut(s) 738
RseI CAYNNNNRTG 2 cut(s) 636, 751
SalI GTCGAC 1 cut(s) 305
SaqAI TTAA 5 cut(s) 255, 315, 395, 531, 542
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 4 cut(s) 94, 322, 619, 682
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 2 cut(s) 62, 206
ScrFI CCNGG 3 cut(s) 561, 562, 727
SfaNI GCATC 1 cut(s) 628
SinI GGWCC 1 cut(s) 18
SmaI CCCGGG 1 cut(s) 562
SmiMI CAYNNNNRTG 2 cut(s) 636, 751
Sse9I AATT 3 cut(s) 237, 256, 495
SspI AATATT 1 cut(s) 118
SspMI CTAG 3 cut(s) 57, 353, 623
StyD4I CCNGG 3 cut(s) 559, 560, 725
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 3 cut(s) 44, 331, 529
TaiI ACGT 2 cut(s) 306, 708
TaqI TCGA 3 cut(s) 93, 306, 452
TasI AATT 3 cut(s) 237, 256, 495
TatI WGTACW 1 cut(s) 737
TfiI GAWTC 5 cut(s) 101, 180, 454, 668, 760
Tru1I TTAA 5 cut(s) 255, 315, 395, 531, 542
Tru9I TTAA 5 cut(s) 255, 315, 395, 531, 542
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 3 cut(s) 160, 785, 816
TspMI CCCGGG 1 cut(s) 560
TspRI CASTG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 18
XagI CCTNNNNNAGG 1 cut(s) 657
XbaI TCTAGA 2 cut(s) 56, 622
XmaI CCCGGG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 3 cut(s) 57, 353, 623
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.