Rh7CG159200

ABC transporter C family member 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0022332
Physical Location & Seq
Forward (+)
13020770 .. 13021788
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG159200.1

Sequence Viewer

Length: 759 bp
ATGGCGGAAGGTTACTGGACCTTGTTCTGTGATTGTTCAACTGAGTCTGGAATTGAATGCAGTTCTGACATTGCAGCCATTATCAATCCAGATTCATGTATCAACAATATTGCGGTCATTGCAGTTGATATCTTGCTTCTATTCATCTTGTTTTGTATCTTCATCTATAGATTATCAAAGAAGGTTATAGCACCATCAGAGTCTTACACCTTCTCTGCTGTGTCAGTTGTTTCGGCCACTTTCAATGCCTGTTTGTCTTTGGCCTATTTGGGTTTTGGGATATGGAAAATGGTCGAGAAAGTAAACACAGATCAGACTTTTTTACCTCTGCATGGATGGCTAGTGTTTTTCTTTCAGGGGTTTACTTGGTTTATGCTGGGATTAACCATAAACCTAAAGAAGCCACACCCTCCCCACATTGCAATAACAAAAGTGCTTTCAATTCTTGGCTTTTTTATTGCAGTTTTGCTTTGTGGTTCATCAATTTGGGAAACTATTCTTGATGAAGAAGTATCCGTTATGATTGTTTTGAACATTCTTTGTTTCCCTGGATCAGTTCTCTTGCTTTTTAGTGCATTTGAGGGATGCAATGTTGCTAAAGGTGATCCACAAGTCCATGTTGACAATGCTCTGGACACACCTCTGCTGGGTGCAGAATCGGATATCGCAGAGGAAAGCTATTCTGATTTCTGGTATCTTTGCACTCATCAAGGTTCTCACACTGACCAGCGGTCCACTGTTTCTGAGGGCCTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

252

Amino Acids

27.82

Weight (kDa)

4.59

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABCC10_N PF24358 3 - 197 1.3e-69 ABCC10 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022332)

Species Orthologous Gene IDs
malus_domestica MD14G1118800.v1.1
rosa_chinensis RchiOBHm_Chr7g0195741
rosa_samantha Rh4BG127300 Rh7CG159200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 113, 730
AclWI GGATC 2 cut(s) 559, 599
AcoI YGGCCR 1 cut(s) 234
AfiI CCNNNNNNNGG 2 cut(s) 332, 647
AgsI TTSAA 5 cut(s) 39, 56, 244, 441, 532
AhdI GACNNNNNGTC 1 cut(s) 730
AjnI CCWGG 1 cut(s) 547
AluBI AGCT 1 cut(s) 678
AluI AGCT 1 cut(s) 678
AlwI GGATC 2 cut(s) 559, 599
AoxI GGCC 3 cut(s) 234, 261, 748
ApeKI GCWGC 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 3 cut(s) 18, 732, 748
AsuHPI GGTGA 1 cut(s) 614
AvaII GGWCC 2 cut(s) 18, 732
BbvI GCAGC 1 cut(s) 86
BccI CCATC 2 cut(s) 202, 330
BciT130I CCWGG 1 cut(s) 549
BciVI GTATCC 1 cut(s) 523
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 166
BfuI GTATCC 1 cut(s) 523
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 549
Bme18I GGWCC 2 cut(s) 18, 732
BmeRI GACNNNNNGTC 1 cut(s) 730
BmgT120I GGNCC 3 cut(s) 18, 732, 748
BmrFI CCNGG 1 cut(s) 549
BmsI GCATC 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 547
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 647
Bse1I ACTGG 1 cut(s) 20
Bse3DI GCAATG 4 cut(s) 69, 117, 417, 595
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 2 cut(s) 341, 590
BseLI CCNNNNNNNGG 2 cut(s) 332, 647
BseMI GCAATG 4 cut(s) 69, 117, 417, 595
BseMII CTCAG 2 cut(s) 33, 735
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 2 cut(s) 376, 646
BsgI GTGCAG 1 cut(s) 672
BshFI GGCC 3 cut(s) 236, 263, 750
BslI CCNNNNNNNGG 2 cut(s) 332, 647
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 3 cut(s) 236, 263, 750
Bsp143I GATC 3 cut(s) 310, 551, 604
BspACI CCGC 3 cut(s) 5, 113, 730
BspANI GGCC 3 cut(s) 236, 263, 750
BspCNI CTCAG 2 cut(s) 34, 736
BspPI GGATC 2 cut(s) 559, 599
BsrDI GCAATG 4 cut(s) 69, 117, 417, 595
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 547
BssMI GATC 3 cut(s) 310, 551, 604
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 1 cut(s) 739
BstDEI CTNAG 2 cut(s) 42, 744
BstF5I GGATG 2 cut(s) 341, 590
BstKTI GATC 3 cut(s) 313, 554, 607
BstMBI GATC 3 cut(s) 310, 551, 604
BstMWI GCNNNNNNNGC 2 cut(s) 119, 337
BstNI CCWGG 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 547
BstSFI CTRYAG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 86
BsuI GTATCC 1 cut(s) 523
BsuRI GGCC 3 cut(s) 236, 263, 750
BtsCI GGATG 2 cut(s) 341, 590
BtsIMutI CAGTG 2 cut(s) 720, 735
Cfr13I GGNCC 3 cut(s) 18, 732, 748
CviAII CATG 3 cut(s) 96, 332, 617
CviJI RGCY 8 cut(s) 77, 236, 263, 340, 403, 450, 678, 750
CviKI_1 RGCY 8 cut(s) 77, 236, 263, 340, 403, 450, 678, 750
DdeI CTNAG 2 cut(s) 42, 744
DpnI GATC 3 cut(s) 312, 553, 606
DpnII GATC 3 cut(s) 310, 551, 604
DriI GACNNNNNGTC 1 cut(s) 730
EaeI YGGCCR 1 cut(s) 234
Eam1105I GACNNNNNGTC 1 cut(s) 730
EciI GGCGGA 1 cut(s) 20
Eco32I GATATC 2 cut(s) 130, 664
Eco47I GGWCC 2 cut(s) 18, 732
EcoO109I RGGNCCY 1 cut(s) 748
EcoRII CCWGG 1 cut(s) 547
EcoRV GATATC 2 cut(s) 130, 664
FaeI CATG 3 cut(s) 99, 335, 620
FaiI YATR 9 cut(s) 97, 168, 188, 283, 333, 374, 389, 521, 618
FatI CATG 3 cut(s) 95, 331, 616
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 2 cut(s) 348, 597
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 341
GluI GCNGC 1 cut(s) 75
GsaI CCCAGC 2 cut(s) 380, 650
HaeIII GGCC 3 cut(s) 236, 263, 750
Hin1II CATG 3 cut(s) 99, 335, 620
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HinfI GANTC 4 cut(s) 44, 92, 200, 656
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 4 cut(s) 304, 363, 622, 735
Hpy188I TCNGA 6 cut(s) 67, 199, 315, 661, 685, 745
Hpy188III TCNNGA 5 cut(s) 48, 89, 295, 500, 632
Hpy8I GTNNAC 4 cut(s) 304, 363, 622, 735
HpyAV CCTTC 2 cut(s) 175, 220
HpyCH4III ACNGT 1 cut(s) 739
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 337
HpyF3I CTNAG 2 cut(s) 42, 744
Hsp92II CATG 3 cut(s) 99, 335, 620
Kzo9I GATC 3 cut(s) 310, 551, 604
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 575
MaeI CTAG 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 11
MalI GATC 3 cut(s) 312, 553, 606
MboI GATC 3 cut(s) 310, 551, 604
MboII GAAGA 2 cut(s) 151, 518
MluCI AATT 3 cut(s) 51, 441, 483
MlyI GAGTC 2 cut(s) 53, 209
MnlI CCTC 6 cut(s) 336, 420, 574, 651, 664, 739
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 730
MspR9I CCNGG 1 cut(s) 549
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 1 cut(s) 549
MwoI GCNNNNNNNGC 2 cut(s) 119, 337
NdeII GATC 3 cut(s) 310, 551, 604
NlaIII CATG 3 cut(s) 99, 335, 620
PctI GAATGC 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 2 cut(s) 92, 656
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 2 cut(s) 52, 208
PpsI GAGTC 2 cut(s) 52, 208
Psp6I CCWGG 1 cut(s) 547
PspFI CCCAGC 2 cut(s) 376, 646
PspGI CCWGG 1 cut(s) 547
PspPI GGNCC 3 cut(s) 18, 732, 748
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 3 cut(s) 310, 551, 604
Sau96I GGNCC 3 cut(s) 18, 732, 748
SchI GAGTC 2 cut(s) 53, 209
ScrFI CCNGG 1 cut(s) 549
SfaNI GCATC 1 cut(s) 575
SfcI CTRYAG 1 cut(s) 166
SinI GGWCC 2 cut(s) 18, 732
Sse9I AATT 3 cut(s) 51, 441, 483
SsiI CCGC 3 cut(s) 5, 113, 730
SspI AATATT 1 cut(s) 109
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 547
TaaI ACNGT 1 cut(s) 739
TaqI TCGA 1 cut(s) 294
TasI AATT 3 cut(s) 51, 441, 483
TfiI GAWTC 2 cut(s) 92, 656
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TscAI CASTG 2 cut(s) 727, 742
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 6 cut(s) 84, 133, 151, 468, 519, 743
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 2 cut(s) 727, 742
VpaK11BI GGWCC 2 cut(s) 18, 732
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.