Rh4BG127300

ABC transporter C family member 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0022332
Physical Location & Seq
Reverse (-)
21321384 .. 21322008
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG127300.1

Sequence Viewer

Length: 306 bp
ATGGCGGAAGGTTTCTGGACCTTGTTTTGTGATTGTTCAACTGAGTCTGGAATTGAATGCAGTTCTGACATTGCAGCCATTAACCATCTAGATTCATGTATGTCATTGCAGTTGATATCTTGCTTATGTTCATCTTGTTTTGTATCCTCATCTATTAGAACACTATCAAAGAAGGTTATAGCATCATCAGAGTCTTGCACATTCTCTGCTGTGTCAATTGTTTCGGCCACTTTCAATGCATGTTTGTCTTTGGCCTATTTGGGTTCTACTCTATGTATTTTCATGAAGAAGATTTGGTTTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

101

Amino Acids

10.86

Weight (kDa)

5.05

Isoelectric Point (pI)

73.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABCC10_N PF24358 3 - 97 2e-12 ABCC10 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022332)

Species Orthologous Gene IDs
malus_domestica MD14G1118800.v1.1
rosa_chinensis RchiOBHm_Chr7g0195741
rosa_samantha Rh4BG127300 Rh7CG159200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 225
AgsI TTSAA 3 cut(s) 39, 56, 235
AoxI GGCC 2 cut(s) 225, 252
ApeKI GCWGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 18
AvaII GGWCC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 86
BccI CCATC 1 cut(s) 93
BciVI GTATCC 1 cut(s) 154
BfaI CTAG 1 cut(s) 89
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 191
Bse3DI GCAATG 2 cut(s) 69, 104
BseMI GCAATG 2 cut(s) 69, 104
BseMII CTCAG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 2 cut(s) 227, 254
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 2 cut(s) 227, 254
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 227, 254
BspCNI CTCAG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 282
BsrDI GCAATG 2 cut(s) 69, 104
BstDEI CTNAG 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 86
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 2 cut(s) 227, 254
CciI TCATGA 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 18
CviAII CATG 3 cut(s) 96, 240, 283
CviJI RGCY 3 cut(s) 77, 227, 254
CviKI_1 RGCY 3 cut(s) 77, 227, 254
DdeI CTNAG 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 225
EciI GGCGGA 1 cut(s) 20
Eco32I GATATC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 18
EcoRV GATATC 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 241
FaeI CATG 3 cut(s) 99, 243, 286
FaiI YATR 7 cut(s) 97, 101, 127, 179, 241, 274, 284
FatI CATG 3 cut(s) 95, 239, 282
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 89
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 2 cut(s) 227, 254
Hin1II CATG 3 cut(s) 99, 243, 286
HinfI GANTC 3 cut(s) 44, 92, 191
Hpy188I TCNGA 2 cut(s) 67, 190
Hpy188III TCNNGA 4 cut(s) 16, 48, 89, 283
HpyAV CCTTC 1 cut(s) 166
HpyCH4V TGCA 5 cut(s) 60, 74, 109, 198, 239
HpyF3I CTNAG 1 cut(s) 42
Hsp92II CATG 3 cut(s) 99, 243, 286
LpnPI CCDG 1 cut(s) 33
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 89
MboII GAAGA 2 cut(s) 298, 301
MfeI CAATTG 1 cut(s) 216
MluCI AATT 2 cut(s) 51, 216
MlyI GAGTC 2 cut(s) 53, 200
MnlI CCTC 1 cut(s) 157
Mph1103I ATGCAT 1 cut(s) 241
MseI TTAA 1 cut(s) 81
MunI CAATTG 1 cut(s) 216
Mva1269I GAATGC 1 cut(s) 62
NlaIII CATG 3 cut(s) 99, 243, 286
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 1 cut(s) 243
PagI TCATGA 1 cut(s) 282
PctI GAATGC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 2 cut(s) 52, 199
PpsI GAGTC 2 cut(s) 52, 199
PspPI GGNCC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 2 cut(s) 53, 200
SetI ASST 3 cut(s) 13, 23, 177
SfaNI GCATC 1 cut(s) 191
SinI GGWCC 1 cut(s) 18
Sse9I AATT 2 cut(s) 51, 216
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 89
TasI AATT 2 cut(s) 51, 216
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 4 cut(s) 84, 120, 271, 299
VpaK11BI GGWCC 1 cut(s) 18
XbaI TCTAGA 1 cut(s) 88
XceI RCATGY 1 cut(s) 243
XspI CTAG 1 cut(s) 89
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.