Stabilization of polarity axis
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G73930 AT1G73930 |
| fragaria_vesca | FvH4_5g12680 |
| malus_domestica | MD06G1211600.v1.1 MD14G1222100.v1.1 |
| prunus_persica | Prupe.5G217600_v2.0.a1 Prupe.5G217600_v2.0.a1 |
| pyrus_communis | pycom06g18900 pycom14g18370 |
| rosa_chinensis | RchiOBHm_Chr7g0184651 |
| rosa_laevigata | RLG00000004962 |
| rosa_multiflora | Rmu_ssc0000289.1_g000026 |
| rosa_roxburghii | Rroxscaffold_3G00269450 |
| rosa_rugosa | Rorug06G0464100 Rorug06G0464200 Rorug06G0464200 Rorug06G0464200 Rorug06G0464200 |
| rosa_samantha | Rh7AG078700 Rh7BG068600 Rh7CG069400 Rh7DG068700 |
| rosa_wichuraiana | Rw7G005660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 673 |
| Acc36I | ACCTGC | 1 cut(s) | 673 |
| AccB1I | GGYRCC | 1 cut(s) | 1980 |
| AccBSI | CCGCTC | 1 cut(s) | 222 |
| AccI | GTMKAC | 1 cut(s) | 1497 |
| AccIII | TCCGGA | 1 cut(s) | 252 |
| AciI | CCGC | 5 cut(s) | 220, 265, 878, 1402, 1937 |
| AclWI | GGATC | 4 cut(s) | 47, 323, 786, 1489 |
| AcsI | RAATTY | 3 cut(s) | 974, 1199, 1213 |
| AcuI | CTGAAG | 2 cut(s) | 778, 1458 |
| AcyI | GRCGYC | 1 cut(s) | 1981 |
| AfaI | GTAC | 5 cut(s) | 494, 606, 753, 1890, 1992 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 608, 1478, 1933 |
| AflII | CTTAAG | 2 cut(s) | 356, 1859 |
| AflIII | ACRYGT | 1 cut(s) | 399 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 289, 486 |
| AjnI | CCWGG | 5 cut(s) | 607, 756, 1130, 1536, 1561 |
| Alw21I | GWGCWC | 3 cut(s) | 1292, 1422, 1957 |
| Alw26I | GTCTC | 6 cut(s) | 342, 421, 471, 999, 1262, 1777 |
| AlwI | GGATC | 4 cut(s) | 47, 323, 786, 1489 |
| Aor13HI | TCCGGA | 1 cut(s) | 252 |
| AoxI | GGCC | 4 cut(s) | 81, 593, 760, 1701 |
| ApeKI | GCWGC | 5 cut(s) | 67, 575, 641, 1810, 1906 |
| ApoI | RAATTY | 3 cut(s) | 974, 1199, 1213 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 514, 546, 959, 991 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1199, 1471 |
| AspLEI | GCGC | 3 cut(s) | 646, 1810, 1983 |
| AspS9I | GGNCC | 6 cut(s) | 530, 760, 1247, 1448, 1559, 1628 |
| AsuC2I | CCSGG | 2 cut(s) | 144, 194 |
| AsuHPI | GGTGA | 3 cut(s) | 857, 1347, 2010 |
| AsuNHI | GCTAGC | 1 cut(s) | 1826 |
| AvaII | GGWCC | 5 cut(s) | 530, 1247, 1448, 1559, 1628 |
| BanI | GGYRCC | 1 cut(s) | 1980 |
| BanII | GRGCYC | 3 cut(s) | 852, 1422, 1957 |
| BbsI | GAAGAC | 2 cut(s) | 1153, 1718 |
| Bbv12I | GWGCWC | 3 cut(s) | 1292, 1422, 1957 |
| BbvI | GCAGC | 5 cut(s) | 79, 562, 628, 1822, 1918 |
| BccI | CCATC | 2 cut(s) | 613, 715 |
| BceAI | ACGGC | 1 cut(s) | 664 |
| BciT130I | CCWGG | 5 cut(s) | 609, 758, 1132, 1538, 1563 |
| BciVI | GTATCC | 1 cut(s) | 1309 |
| BcnI | CCSGG | 2 cut(s) | 144, 194 |
| BcoDI | GTCTC | 6 cut(s) | 342, 421, 471, 999, 1262, 1777 |
| BfaI | CTAG | 3 cut(s) | 498, 1464, 1827 |
| BfmI | CTRYAG | 2 cut(s) | 1622, 1871 |
| BfoI | RGCGCY | 1 cut(s) | 1984 |
| BfrI | CTTAAG | 2 cut(s) | 356, 1859 |
| BfuAI | ACCTGC | 1 cut(s) | 673 |
| BfuI | GTATCC | 1 cut(s) | 1309 |
| BglII | AGATCT | 2 cut(s) | 1589, 1867 |
| BisI | GCNGC | 7 cut(s) | 68, 576, 642, 1403, 1811, 1907, 1938 |
| BlsI | GCNGC | 7 cut(s) | 69, 577, 643, 1404, 1812, 1908, 1939 |
| Bme1390I | CCNGG | 7 cut(s) | 144, 194, 609, 758, 1132, 1538, 1563 |
| Bme18I | GGWCC | 5 cut(s) | 530, 1247, 1448, 1559, 1628 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 289, 486 |
| BmgT120I | GGNCC | 6 cut(s) | 530, 760, 1247, 1448, 1559, 1628 |
| BmiI | GGNNCC | 6 cut(s) | 531, 726, 1248, 1440, 1629, 1982 |
| BmrFI | CCNGG | 7 cut(s) | 144, 194, 609, 758, 1132, 1538, 1563 |
| BmsI | GCATC | 3 cut(s) | 220, 798, 1333 |
| BmtI | GCTAGC | 1 cut(s) | 1830 |
| BpiI | GAAGAC | 2 cut(s) | 1153, 1718 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 27, 698, 730 |
| BpmI | CTGGAG | 1 cut(s) | 1714 |
| BpuEI | CTTGAG | 2 cut(s) | 208, 584 |
| BpuMI | CCSGG | 2 cut(s) | 144, 194 |
| BsaHI | GRCGYC | 1 cut(s) | 1981 |
| BsaJI | CCNNGG | 6 cut(s) | 756, 757, 1358, 1537, 1562, 1643 |
| BsaWI | WCCGGW | 1 cut(s) | 252 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 449, 479, 974, 1004, 1231, 1261 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 608, 1478, 1933 |
| Bse118I | RCCGGY | 2 cut(s) | 1113, 1611 |
| Bse1I | ACTGG | 3 cut(s) | 745, 1147, 1601 |
| Bse3DI | GCAATG | 2 cut(s) | 77, 887 |
| BseAI | TCCGGA | 1 cut(s) | 252 |
| BseBI | CCWGG | 5 cut(s) | 609, 758, 1132, 1538, 1563 |
| BseDI | CCNNGG | 6 cut(s) | 756, 757, 1358, 1537, 1562, 1643 |
| BseGI | GGATG | 1 cut(s) | 1356 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 608, 1478, 1933 |
| BseMI | GCAATG | 2 cut(s) | 77, 887 |
| BseNI | ACTGG | 3 cut(s) | 745, 1147, 1601 |
| BseRI | GAGGAG | 4 cut(s) | 179, 706, 864, 1252 |
| BseXI | GCAGC | 5 cut(s) | 79, 562, 628, 1822, 1918 |
| BseYI | CCCAGC | 2 cut(s) | 207, 1346 |
| BsgI | GTGCAG | 1 cut(s) | 651 |
| BshFI | GGCC | 4 cut(s) | 83, 595, 762, 1703 |
| BshNI | GGYRCC | 1 cut(s) | 1980 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1292, 1422, 1957 |
| BsiSI | CCGG | 6 cut(s) | 144, 194, 253, 1114, 1313, 1612 |
| BslFI | GGGAC | 1 cut(s) | 1641 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 608, 1478, 1933 |
| BsmAI | GTCTC | 6 cut(s) | 342, 421, 471, 999, 1262, 1777 |
| BsmFI | GGGAC | 1 cut(s) | 1641 |
| BsmI | GAATGC | 3 cut(s) | 228, 643, 1228 |
| BsnI | GGCC | 4 cut(s) | 83, 595, 762, 1703 |
| Bsp1286I | GDGCHC | 4 cut(s) | 852, 1292, 1422, 1957 |
| Bsp13I | TCCGGA | 1 cut(s) | 252 |
| Bsp1407I | TGTACA | 1 cut(s) | 1990 |
| Bsp143I | GATC | 7 cut(s) | 52, 103, 328, 778, 1481, 1589, 1867 |
| Bsp19I | CCATGG | 1 cut(s) | 1643 |
| BspACI | CCGC | 5 cut(s) | 220, 265, 878, 1402, 1937 |
| BspANI | GGCC | 4 cut(s) | 83, 595, 762, 1703 |
| BspEI | TCCGGA | 1 cut(s) | 252 |
| BspHI | TCATGA | 3 cut(s) | 232, 769, 1260 |
| BspLI | GGNNCC | 6 cut(s) | 531, 726, 1248, 1440, 1629, 1982 |
| BspMAI | CTGCAG | 1 cut(s) | 1875 |
| BspMI | ACCTGC | 1 cut(s) | 673 |
| BspOI | GCTAGC | 1 cut(s) | 1830 |
| BspPI | GGATC | 4 cut(s) | 47, 323, 786, 1489 |
| BspQI | GCTCTTC | 1 cut(s) | 1947 |
| BspT107I | GGYRCC | 1 cut(s) | 1980 |
| BspTI | CTTAAG | 2 cut(s) | 356, 1859 |
| BsrBI | CCGCTC | 1 cut(s) | 222 |
| BsrDI | GCAATG | 2 cut(s) | 77, 887 |
| BsrFI | RCCGGY | 2 cut(s) | 1113, 1611 |
| BsrGI | TGTACA | 1 cut(s) | 1990 |
| BsrI | ACTGG | 3 cut(s) | 745, 1147, 1601 |
| BssAI | RCCGGY | 2 cut(s) | 1113, 1611 |
| BssECI | CCNNGG | 6 cut(s) | 756, 757, 1358, 1537, 1562, 1643 |
| BssMI | GATC | 7 cut(s) | 52, 103, 328, 778, 1481, 1589, 1867 |
| BssNI | GRCGYC | 1 cut(s) | 1981 |
| BssT1I | CCWWGG | 2 cut(s) | 1358, 1643 |
| Bst2UI | CCWGG | 5 cut(s) | 609, 758, 1132, 1538, 1563 |
| Bst4CI | ACNGT | 3 cut(s) | 488, 513, 1804 |
| Bst6I | CTCTTC | 3 cut(s) | 123, 1065, 1947 |
| BstACI | GRCGYC | 1 cut(s) | 1981 |
| BstAFI | CTTAAG | 2 cut(s) | 356, 1859 |
| BstAUI | TGTACA | 1 cut(s) | 1990 |
| BstC8I | GCNNGC | 7 cut(s) | 597, 677, 1119, 1662, 1701, 1828, 1875 |
| BstDEI | CTNAG | 3 cut(s) | 333, 1308, 1737 |
| BstDSI | CCRYGG | 1 cut(s) | 1643 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1476 |
| BstF5I | GGATG | 1 cut(s) | 1356 |
| BstH2I | RGCGCY | 1 cut(s) | 1984 |
| BstHHI | GCGC | 3 cut(s) | 646, 1810, 1983 |
| BstKTI | GATC | 7 cut(s) | 55, 106, 331, 781, 1484, 1592, 1870 |
| BstMAI | GTCTC | 6 cut(s) | 342, 421, 471, 999, 1262, 1777 |
| BstMBI | GATC | 7 cut(s) | 52, 103, 328, 778, 1481, 1589, 1867 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 622 |
| BstNI | CCWGG | 5 cut(s) | 609, 758, 1132, 1538, 1563 |
| BstNSI | RCATGY | 2 cut(s) | 403, 1906 |
| BstSCI | CCNGG | 7 cut(s) | 142, 192, 607, 756, 1130, 1536, 1561 |
| BstSFI | CTRYAG | 2 cut(s) | 1622, 1871 |
| BstV1I | GCAGC | 5 cut(s) | 79, 562, 628, 1822, 1918 |
| BstV2I | GAAGAC | 2 cut(s) | 1153, 1718 |
| BstX2I | RGATCY | 5 cut(s) | 328, 778, 1481, 1589, 1867 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1435 |
| BstYI | RGATCY | 5 cut(s) | 328, 778, 1481, 1589, 1867 |
| BsuI | GTATCC | 1 cut(s) | 1309 |
| BsuRI | GGCC | 4 cut(s) | 83, 595, 762, 1703 |
| BtgI | CCRYGG | 1 cut(s) | 1643 |
| BtsCI | GGATG | 1 cut(s) | 1356 |
| BtsI | GCAGTG | 2 cut(s) | 892, 940 |
| BtsIMutI | CAGTG | 3 cut(s) | 892, 940, 1809 |
| BveI | ACCTGC | 1 cut(s) | 673 |
| Cac8I | GCNNGC | 7 cut(s) | 597, 677, 1119, 1662, 1701, 1828, 1875 |
| CciI | TCATGA | 3 cut(s) | 232, 769, 1260 |
| CfoI | GCGC | 3 cut(s) | 646, 1810, 1983 |
| Cfr10I | RCCGGY | 2 cut(s) | 1113, 1611 |
| Cfr13I | GGNCC | 6 cut(s) | 530, 760, 1247, 1448, 1559, 1628 |
| CseI | GACGC | 1 cut(s) | 490 |
| CsiI | ACCWGGT | 1 cut(s) | 607 |
| Csp6I | GTAC | 5 cut(s) | 493, 605, 752, 1889, 1991 |
| CviAII | CATG | 9 cut(s) | 233, 400, 431, 526, 770, 965, 1261, 1644, 1903 |
| CviQI | GTAC | 5 cut(s) | 493, 605, 752, 1889, 1991 |
| DdeI | CTNAG | 3 cut(s) | 333, 1308, 1737 |
| DinI | GGCGCC | 1 cut(s) | 1982 |
| DpnI | GATC | 7 cut(s) | 54, 105, 330, 780, 1483, 1591, 1869 |
| DpnII | GATC | 7 cut(s) | 52, 103, 328, 778, 1481, 1589, 1867 |
| DriI | GACNNNNNGTC | 2 cut(s) | 289, 486 |
| Eam1104I | CTCTTC | 3 cut(s) | 123, 1065, 1947 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 289, 486 |
| EarI | CTCTTC | 3 cut(s) | 123, 1065, 1947 |
| Ecl136II | GAGCTC | 2 cut(s) | 1420, 1955 |
| Eco130I | CCWWGG | 2 cut(s) | 1358, 1643 |
| Eco24I | GRGCYC | 3 cut(s) | 852, 1422, 1957 |
| Eco47I | GGWCC | 5 cut(s) | 530, 1247, 1448, 1559, 1628 |
| Eco53kI | GAGCTC | 2 cut(s) | 1420, 1955 |
| Eco57I | CTGAAG | 2 cut(s) | 778, 1458 |
| EcoICRI | GAGCTC | 2 cut(s) | 1420, 1955 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1476 |
| EcoO109I | RGGNCCY | 4 cut(s) | 530, 760, 1247, 1559 |
| EcoRII | CCWGG | 5 cut(s) | 607, 756, 1130, 1536, 1561 |
| EcoT14I | CCWWGG | 2 cut(s) | 1358, 1643 |
| EcoT38I | GRGCYC | 3 cut(s) | 852, 1422, 1957 |
| EgeI | GGCGCC | 1 cut(s) | 1982 |
| EheI | GGCGCC | 1 cut(s) | 1982 |
| ErhI | CCWWGG | 2 cut(s) | 1358, 1643 |
| FaeI | CATG | 9 cut(s) | 236, 403, 434, 529, 773, 968, 1264, 1647, 1906 |
| FaqI | GGGAC | 1 cut(s) | 1641 |
| FatI | CATG | 9 cut(s) | 232, 399, 430, 525, 769, 964, 1260, 1643, 1902 |
| FauI | CCCGC | 1 cut(s) | 258 |
| FblI | GTMKAC | 1 cut(s) | 1497 |
| Fnu4HI | GCNGC | 7 cut(s) | 68, 576, 642, 1403, 1811, 1907, 1938 |
| FokI | GGATG | 1 cut(s) | 1363 |
| FriOI | GRGCYC | 3 cut(s) | 852, 1422, 1957 |
| Fsp4HI | GCNGC | 7 cut(s) | 68, 576, 642, 1403, 1811, 1907, 1938 |
| FspBI | CTAG | 3 cut(s) | 498, 1464, 1827 |
| GlaI | GCGC | 3 cut(s) | 645, 1809, 1982 |
| GluI | GCNGC | 7 cut(s) | 68, 576, 642, 1403, 1811, 1907, 1938 |
| GsaI | CCCAGC | 2 cut(s) | 211, 1350 |
| GsuI | CTGGAG | 1 cut(s) | 1714 |
| HaeII | RGCGCY | 1 cut(s) | 1984 |
| HaeIII | GGCC | 4 cut(s) | 83, 595, 762, 1703 |
| HapII | CCGG | 6 cut(s) | 144, 194, 253, 1114, 1313, 1612 |
| HgaI | GACGC | 1 cut(s) | 490 |
| HhaI | GCGC | 3 cut(s) | 646, 1810, 1983 |
| Hin1I | GRCGYC | 1 cut(s) | 1981 |
| Hin1II | CATG | 9 cut(s) | 236, 403, 434, 529, 773, 968, 1264, 1647, 1906 |
| Hin6I | GCGC | 3 cut(s) | 644, 1808, 1981 |
| HinP1I | GCGC | 3 cut(s) | 644, 1808, 1981 |
| HincII | GTYRAC | 1 cut(s) | 1387 |
| HindII | GTYRAC | 1 cut(s) | 1387 |
| HindIII | AAGCTT | 1 cut(s) | 47 |
| HpaI | GTTAAC | 1 cut(s) | 1387 |
| HpaII | CCGG | 6 cut(s) | 144, 194, 253, 1114, 1313, 1612 |
| HphI | GGTGA | 3 cut(s) | 857, 1347, 2010 |
| Hpy166II | GTNNAC | 3 cut(s) | 655, 1387, 1498 |
| Hpy188I | TCNGA | 7 cut(s) | 34, 216, 685, 778, 1477, 1552, 1747 |
| Hpy8I | GTNNAC | 3 cut(s) | 655, 1387, 1498 |
| HpyCH4III | ACNGT | 3 cut(s) | 488, 513, 1804 |
| HpyCH4IV | ACGT | 1 cut(s) | 1077 |
| HpyCH4V | TGCA | 9 cut(s) | 67, 668, 885, 920, 933, 1640, 1844, 1873, 1906 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 622 |
| HpyF3I | CTNAG | 3 cut(s) | 333, 1308, 1737 |
| HpySE526I | ACGT | 1 cut(s) | 1077 |
| Hsp92I | GRCGYC | 1 cut(s) | 1981 |
| Hsp92II | CATG | 9 cut(s) | 236, 403, 434, 529, 773, 968, 1264, 1647, 1906 |
| HspAI | GCGC | 3 cut(s) | 644, 1808, 1981 |
| KasI | GGCGCC | 1 cut(s) | 1980 |
| Kpn2I | TCCGGA | 1 cut(s) | 252 |
| KspAI | GTTAAC | 1 cut(s) | 1387 |
| Kzo9I | GATC | 7 cut(s) | 52, 103, 328, 778, 1481, 1589, 1867 |
| LguI | GCTCTTC | 1 cut(s) | 1947 |
| Lsp1109I | GCAGC | 5 cut(s) | 79, 562, 628, 1822, 1918 |
| LweI | GCATC | 3 cut(s) | 220, 798, 1333 |
| MabI | ACCWGGT | 1 cut(s) | 607 |
| MaeI | CTAG | 3 cut(s) | 498, 1464, 1827 |
| MaeII | ACGT | 1 cut(s) | 1077 |
| MaeIII | GTNAC | 4 cut(s) | 516, 834, 1033, 1353 |
| MalI | GATC | 7 cut(s) | 54, 105, 330, 780, 1483, 1591, 1869 |
| MbiI | CCGCTC | 1 cut(s) | 222 |
| MboI | GATC | 7 cut(s) | 52, 103, 328, 778, 1481, 1589, 1867 |
| MflI | RGATCY | 5 cut(s) | 328, 778, 1481, 1589, 1867 |
| MhlI | GDGCHC | 4 cut(s) | 852, 1292, 1422, 1957 |
| Mly113I | GGCGCC | 1 cut(s) | 1981 |
| MlyI | GAGTC | 5 cut(s) | 13, 716, 767, 1683, 1829 |
| MmeI | TCCRAC | 3 cut(s) | 529, 893, 1069 |
| MroI | TCCGGA | 1 cut(s) | 252 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1199, 1471 |
| MseI | TTAA | 9 cut(s) | 27, 357, 372, 417, 1053, 1386, 1521, 1730, 1860 |
| MslI | CAYNNNNRTG | 2 cut(s) | 237, 302 |
| MspCI | CTTAAG | 2 cut(s) | 356, 1859 |
| MspI | CCGG | 6 cut(s) | 144, 194, 253, 1114, 1313, 1612 |
| MspR9I | CCNGG | 7 cut(s) | 144, 194, 609, 758, 1132, 1538, 1563 |
| Mva1269I | GAATGC | 3 cut(s) | 228, 643, 1228 |
| MvaI | CCWGG | 5 cut(s) | 609, 758, 1132, 1538, 1563 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 622 |
| NarI | GGCGCC | 1 cut(s) | 1981 |
| NciI | CCSGG | 2 cut(s) | 144, 194 |
| NcoI | CCATGG | 1 cut(s) | 1643 |
| NdeII | GATC | 7 cut(s) | 52, 103, 328, 778, 1481, 1589, 1867 |
| NheI | GCTAGC | 1 cut(s) | 1826 |
| NlaIII | CATG | 9 cut(s) | 236, 403, 434, 529, 773, 968, 1264, 1647, 1906 |
| NlaIV | GGNNCC | 6 cut(s) | 531, 726, 1248, 1440, 1629, 1982 |
| NmuCI | GTSAC | 2 cut(s) | 1033, 1353 |
| NspI | RCATGY | 2 cut(s) | 403, 1906 |
| PagI | TCATGA | 3 cut(s) | 232, 769, 1260 |
| PaqCI | CACCTGC | 1 cut(s) | 673 |
| PasI | CCCWGGG | 1 cut(s) | 757 |
| PciI | ACATGT | 1 cut(s) | 399 |
| PciSI | GCTCTTC | 1 cut(s) | 1947 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 488 |
| PctI | GAATGC | 3 cut(s) | 228, 643, 1228 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1199, 1471 |
| PfeI | GAWTC | 5 cut(s) | 59, 197, 256, 1370, 1763 |
| PfoI | TCCNGGA | 1 cut(s) | 192 |
| PkrI | GCNGC | 7 cut(s) | 69, 577, 643, 1404, 1812, 1908, 1939 |
| PleI | GAGTC | 5 cut(s) | 12, 715, 767, 1683, 1829 |
| PluTI | GGCGCC | 1 cut(s) | 1984 |
| PpsI | GAGTC | 5 cut(s) | 12, 715, 767, 1683, 1829 |
| PpuMI | RGGWCCY | 3 cut(s) | 530, 1247, 1559 |
| PscI | ACATGT | 1 cut(s) | 399 |
| Psp124BI | GAGCTC | 2 cut(s) | 1422, 1957 |
| Psp5II | RGGWCCY | 3 cut(s) | 530, 1247, 1559 |
| Psp6I | CCWGG | 5 cut(s) | 607, 756, 1130, 1536, 1561 |
| PspFI | CCCAGC | 2 cut(s) | 207, 1346 |
| PspGI | CCWGG | 5 cut(s) | 607, 756, 1130, 1536, 1561 |
| PspN4I | GGNNCC | 6 cut(s) | 531, 726, 1248, 1440, 1629, 1982 |
| PspPI | GGNCC | 6 cut(s) | 530, 760, 1247, 1448, 1559, 1628 |
| PspPPI | RGGWCCY | 3 cut(s) | 530, 1247, 1559 |
| PstI | CTGCAG | 1 cut(s) | 1875 |
| PsuI | RGATCY | 5 cut(s) | 328, 778, 1481, 1589, 1867 |
| RsaI | GTAC | 5 cut(s) | 494, 606, 753, 1890, 1992 |
| RsaNI | GTAC | 5 cut(s) | 493, 605, 752, 1889, 1991 |
| RseI | CAYNNNNRTG | 2 cut(s) | 237, 302 |
| SacI | GAGCTC | 2 cut(s) | 1422, 1957 |
| SapI | GCTCTTC | 1 cut(s) | 1947 |
| SaqAI | TTAA | 9 cut(s) | 27, 357, 372, 417, 1053, 1386, 1521, 1730, 1860 |
| SatI | GCNGC | 7 cut(s) | 68, 576, 642, 1403, 1811, 1907, 1938 |
| Sau3AI | GATC | 7 cut(s) | 52, 103, 328, 778, 1481, 1589, 1867 |
| Sau96I | GGNCC | 6 cut(s) | 530, 760, 1247, 1448, 1559, 1628 |
| SchI | GAGTC | 5 cut(s) | 13, 716, 767, 1683, 1829 |
| ScrFI | CCNGG | 7 cut(s) | 144, 194, 609, 758, 1132, 1538, 1563 |
| SduI | GDGCHC | 4 cut(s) | 852, 1292, 1422, 1957 |
| SexAI | ACCWGGT | 1 cut(s) | 607 |
| SfaNI | GCATC | 3 cut(s) | 220, 798, 1333 |
| SfcI | CTRYAG | 2 cut(s) | 1622, 1871 |
| SfoI | GGCGCC | 1 cut(s) | 1982 |
| SinI | GGWCC | 5 cut(s) | 530, 1247, 1448, 1559, 1628 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 237, 302 |
| SmlI | CTYRAG | 4 cut(s) | 223, 356, 563, 1859 |
| SmoI | CTYRAG | 4 cut(s) | 223, 356, 563, 1859 |
| SsiI | CCGC | 5 cut(s) | 220, 265, 878, 1402, 1937 |
| SspDI | GGCGCC | 1 cut(s) | 1980 |
| SspI | AATATT | 1 cut(s) | 1398 |
| SspMI | CTAG | 3 cut(s) | 498, 1464, 1827 |
| SstI | GAGCTC | 2 cut(s) | 1422, 1957 |
| StyD4I | CCNGG | 7 cut(s) | 142, 192, 607, 756, 1130, 1536, 1561 |
| StyI | CCWWGG | 2 cut(s) | 1358, 1643 |
| TaaI | ACNGT | 3 cut(s) | 488, 513, 1804 |
| TaiI | ACGT | 1 cut(s) | 1080 |
| TaqI | TCGA | 2 cut(s) | 719, 1770 |
| TatI | WGTACW | 2 cut(s) | 1888, 1990 |
| TauI | GCSGC | 2 cut(s) | 1405, 1940 |
| TfiI | GAWTC | 5 cut(s) | 59, 197, 256, 1370, 1763 |
| Tru1I | TTAA | 9 cut(s) | 27, 357, 372, 417, 1053, 1386, 1521, 1730, 1860 |
| Tru9I | TTAA | 9 cut(s) | 27, 357, 372, 417, 1053, 1386, 1521, 1730, 1860 |
| TscAI | CASTG | 3 cut(s) | 892, 940, 1809 |
| TseFI | GTSAC | 2 cut(s) | 1033, 1353 |
| TseI | GCWGC | 5 cut(s) | 67, 575, 641, 1810, 1906 |
| Tsp45I | GTSAC | 2 cut(s) | 1033, 1353 |
| TspDTI | ATGAA | 6 cut(s) | 6, 221, 758, 1244, 1407, 1724 |
| TspGWI | ACGGA | 5 cut(s) | 480, 705, 986, 1280, 1479 |
| TspRI | CASTG | 3 cut(s) | 892, 940, 1809 |
| Vha464I | CTTAAG | 2 cut(s) | 356, 1859 |
| VpaK11BI | GGWCC | 5 cut(s) | 530, 1247, 1448, 1559, 1628 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1476 |
| XapI | RAATTY | 3 cut(s) | 974, 1199, 1213 |
| XceI | RCATGY | 2 cut(s) | 403, 1906 |
| XmiI | GTMKAC | 1 cut(s) | 1497 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1199, 1471 |
| XspI | CTAG | 3 cut(s) | 498, 1464, 1827 |