Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008744

Physical Location & Seq

Genomic Coordinates Forward (+)

22475383 .. 22475943

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGACTAAAAGTGATAAGAAGTTAGATCCAAAGTCTCCCGATGTAAAAGTTCTTAAGAGGTCAAAAAGTAACAACAATTCTAATGCTTCGAGATACATGTATGAGTATGTTTTTAATAGACAGAGACATGATGAAAGGCTAAAACGAGGCGGGGAGCAGAAGTCTGTCGTAATCTTGTCGCACAGTCCGTACTCTAGTGTGTTTAGACCGTTGTTACAAATCATGGGTCCTCTATTTTTTGACATTGGAAGGAAAGCTCTTGAGCATATTGCTGCTTATGTTTCAATGTGGCCTGCTCCTGTACCTGGTAAGCTGATGGAGCTTCCTATTGGGAATGCTGTGCTGAAAGTGAACTTGCCACCTGCACATAGCTTGGCGTCAGAAAACGGAATGTTGCTTGAAGAGTCTGCCTCCTCGATGGCTCCTTTTCTTCCTAATAACCAGTCAGTCCCACAAGGCCTTTTTCATGACTCGATCTATTTGGCATCTTCAGGGGTCTCTTATTACAGCTCTGGGTTATGTGGGAGTTGTTACTTATTGGTGAGCCCATGCTTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPA

Protein Analysis

187

Amino Acids

20.54

Weight (kDa)

9.24

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73930 AT1G73930
fragaria_vesca	FvH4_5g12680
malus_domestica	MD06G1211600.v1.1 MD14G1222100.v1.1
prunus_persica	Prupe.5G217600_v2.0.a1 Prupe.5G217600_v2.0.a1
pyrus_communis	pycom06g18900 pycom14g18370
rosa_chinensis	RchiOBHm_Chr7g0184651
rosa_laevigata	RLG00000004962
rosa_multiflora	Rmu_ssc0000289.1_g000026
rosa_roxburghii	Rroxscaffold_3G00269450
rosa_rugosa	Rorug06G0464100 Rorug06G0464200 Rorug06G0464200 Rorug06G0464200 Rorug06G0464200
rosa_samantha	Rh7AG078700 Rh7BG068600 Rh7CG069400 Rh7DG068700
rosa_wichuraiana	Rw7G005660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	370
Acc36I	ACCTGC	1 cut(s)	370
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	377
AfaI	GTAC	2 cut(s)	191, 303
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflII	CTTAAG	1 cut(s)	53
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	285, 401
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	5 cut(s)	257, 313, 322, 372, 510
AluI	AGCT	5 cut(s)	257, 313, 322, 372, 510
Alw26I	GTCTC	3 cut(s)	39, 118, 502
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	2 cut(s)	290, 457
ApeKI	GCWGC	1 cut(s)	272
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	553
AvaII	GGWCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	548
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	2 cut(s)	310, 412
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	3 cut(s)	39, 118, 502
BfaI	CTAG	1 cut(s)	195
BfrI	CTTAAG	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	228, 423
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpuEI	CTTGAG	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	442
BseRI	GAGGAG	1 cut(s)	403
BseXI	GCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	2 cut(s)	292, 459
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	3 cut(s)	39, 118, 502
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	2 cut(s)	292, 459
Bso31I	GGTCTC	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	548
Bsp143I	GATC	2 cut(s)	25, 474
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	2 cut(s)	292, 459
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	228, 423
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	442
BssMI	GATC	2 cut(s)	25, 474
BssNI	GRCGYC	1 cut(s)	377
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	185, 210
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	377
BstAFI	CTTAAG	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	294
BstKTI	GATC	2 cut(s)	28, 477
BstMAI	GTCTC	3 cut(s)	39, 118, 502
BstMBI	GATC	2 cut(s)	25, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	292, 459
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	1 cut(s)	366
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	190, 302
CviAII	CATG	5 cut(s)	97, 128, 223, 467, 549
CviQI	GTAC	2 cut(s)	190, 302
DpnI	GATC	2 cut(s)	27, 476
DpnII	GATC	2 cut(s)	25, 474
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco147I	AGGCCT	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	548
Eco31I	GGTCTC	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	474
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	548
FaeI	CATG	5 cut(s)	100, 131, 226, 470, 552
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	5 cut(s)	96, 127, 222, 466, 548
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	273
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	292, 459
HgaI	GACGC	1 cut(s)	366
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	5 cut(s)	100, 131, 226, 470, 552
HinfI	GANTC	2 cut(s)	404, 470
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	4 cut(s)	38, 90, 260, 467
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	185, 210
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	5 cut(s)	100, 131, 226, 470, 552
Kzo9I	GATC	2 cut(s)	25, 474
LmnI	GCTCC	4 cut(s)	154, 301, 319, 427
LpnPI	CCDG	8 cut(s)	291, 306, 312, 318, 375, 455, 477, 498
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	494
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	3 cut(s)	68, 213, 530
MalI	GATC	2 cut(s)	27, 476
MboI	GATC	2 cut(s)	25, 474
MboII	GAAGA	3 cut(s)	413, 422, 480
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	548
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	2 cut(s)	413, 464
MnlI	CCTC	5 cut(s)	51, 140, 240, 421, 424
MseI	TTAA	2 cut(s)	54, 114
MspCI	CTTAAG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	319
NdeII	GATC	2 cut(s)	25, 474
NlaIII	CATG	5 cut(s)	100, 131, 226, 470, 552
NlaIV	GGNNCC	2 cut(s)	228, 423
NspI	RCATGY	1 cut(s)	100
PagI	TCATGA	1 cut(s)	466
PaqCI	CACCTGC	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	459
PciI	ACATGT	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PctI	GAATGC	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	2 cut(s)	412, 464
PpsI	GAGTC	2 cut(s)	412, 464
PpuMI	RGGWCCY	1 cut(s)	227
PscI	ACATGT	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	228, 423
PspPI	GGNCC	1 cut(s)	227
PspPPI	RGGWCCY	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	2 cut(s)	191, 303
RsaNI	GTAC	2 cut(s)	190, 302
SaqAI	TTAA	2 cut(s)	54, 114
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	2 cut(s)	25, 474
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	2 cut(s)	413, 464
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	548
SetI	ASST	8 cut(s)	62, 259, 307, 315, 324, 364, 374, 512
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	1 cut(s)	494
SinI	GGWCC	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	53, 260
SmoI	CTYRAG	2 cut(s)	53, 260
Sse9I	AATT	1 cut(s)	76
SseBI	AGGCCT	1 cut(s)	459
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	185, 210
TaqI	TCGA	3 cut(s)	89, 416, 473
TasI	AATT	1 cut(s)	76
Tru1I	TTAA	2 cut(s)	54, 114
Tru9I	TTAA	2 cut(s)	54, 114
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	147, 455
TspGWI	ACGGA	2 cut(s)	177, 402
Vha464I	CTTAAG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	227
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.