Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0019761

Physical Location & Seq

Genomic Coordinates Reverse (-)

2538902 .. 2540728

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1036300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGGAAGTTGAAGCTTGGGAGTTCTTCTTGGAGCTTGAACAAGGAAAGAAACTGTCTGTTTACGAAGACGGAGTCTTTTGGTAGGGTATCTATGGTAGCTGCGGTGAATGTCTCCAAATTCGAGGGTGTAACGATGGCCCCGCCGGATCCAATTCTCGGAGTTTCTGAAGCATTCAAATCTAGCACAAACGAATCAAAGCTCGACCTTGGAGTTGGGGCATATCGAACGGAAGAGCTTCAGCCATACGTGCTTGATGTTGTTAAGAAGGTCAGATCCCTATCCTCCACGAAATACAAAATCTTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004069 GO:0006082 GO:0006103 GO:0006520 GO:0006531 GO:0006536 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009064 GO:0009066 GO:0009987 GO:0016740 GO:0016769 GO:0019752 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0051186 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00270 ko00330 ko00350 ko00360 ko00400 ko00950 ko00960 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map00250 map00270 map00330 map00350 map00360 map00400 map00950 map00960 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

104

Amino Acids

11.35

Weight (kDa)

9.48

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019761)

Species	Orthologous Gene IDs
malus_domestica	MD15G1036300.v1.1
rosa_chinensis	RchiOBHm_Chr3g0470091
rosa_laevigata	RLG00000024297
rosa_rugosa	Rorug03G0106800
rosa_samantha	Rh3AG156000 Rh3BG180000 Rh3CG170700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	104, 143
AclWI	GGATC	3 cut(s)	143, 156, 270
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	2 cut(s)	189, 224
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	13, 40, 178
AluBI	AGCT	5 cut(s)	16, 36, 101, 202, 238
AluI	AGCT	5 cut(s)	16, 36, 101, 202, 238
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	3 cut(s)	143, 156, 270
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
Asp700I	GAANNNNTTC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	118
BamHI	GGATCC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	183
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	141, 150
BpiI	GAAGAC	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	88
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	148, 275
BspACI	CCGC	2 cut(s)	104, 143
BspANI	GGCC	1 cut(s)	140
BspLI	GGNNCC	2 cut(s)	141, 150
BspPI	GGATC	3 cut(s)	143, 156, 270
BspQI	GCTCTTC	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	2 cut(s)	148, 275
BssT1I	CCWWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	228
BstBAI	YACGTR	1 cut(s)	250
BstKTI	GATC	2 cut(s)	151, 278
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	2 cut(s)	148, 275
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	2 cut(s)	148, 275
BstYI	RGATCY	2 cut(s)	148, 275
BsuRI	GGCC	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	139
CviJI	RGCY	7 cut(s)	16, 36, 101, 140, 202, 238, 244
CviKI_1	RGCY	7 cut(s)	16, 36, 101, 140, 202, 238, 244
DpnI	GATC	2 cut(s)	150, 277
DpnII	GATC	2 cut(s)	148, 275
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	189, 224
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaiI	YATR	3 cut(s)	95, 223, 247
FauI	CCCGC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	2 cut(s)	74, 194
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	3 cut(s)	161, 169, 275
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpySE526I	ACGT	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	148, 275
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	1 cut(s)	159
Lsp1109I	GCAGC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	150, 277
MboI	GATC	2 cut(s)	148, 275
MboII	GAAGA	3 cut(s)	18, 79, 245
MflI	RGATCY	2 cut(s)	148, 275
MluCI	AATT	2 cut(s)	119, 153
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	2 cut(s)	118, 295
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	1 cut(s)	264
MspI	CCGG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	250
NdeII	GATC	2 cut(s)	148, 275
NlaIV	GGNNCC	2 cut(s)	141, 150
PciSI	GCTCTTC	1 cut(s)	228
PctI	GAATGC	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	194
PflFI	GACNNNGTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Ppu21I	YACGTR	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	141, 150
PspPI	GGNCC	1 cut(s)	139
PsuI	RGATCY	2 cut(s)	148, 275
PsyI	GACNNNGTC	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	148, 275
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	83
SetI	ASST	8 cut(s)	18, 38, 103, 204, 210, 240, 252, 273
Sse9I	AATT	2 cut(s)	119, 153
SsiI	CCGC	2 cut(s)	104, 143
SspMI	CTAG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	3 cut(s)	123, 204, 226
TasI	AATT	2 cut(s)	119, 153
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TseI	GCWGC	1 cut(s)	101
TspGWI	ACGGA	2 cut(s)	86, 245
Tth111I	GACNNNGTC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.