Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0019761

Physical Location & Seq

Genomic Coordinates Forward (+)

8592335 .. 8593635

Gene Structure 1301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0106800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTCTATACAAGATAATGTCTGCGCCCTAGTTATGGAAGAGCATGCACCTGTGGCGGTCTGTGATGAAGCAATGCTGGCTCCTGAGGAAGTATTTTCGGGCAAAGATGATAAGAAAGAAGCAGAACTTACACAGGTGGAGAGAAAAAGGAGGACAGCTAACAATAAAAGGAAATTTAAAGCTGTGACAGCAAAAAGGATGGCAAAGAAGCCACGAGACGGCATATATAGAAGCCATGTGACAGCGAGGCGTTATGGTTCTTATCAATATATAAACATTAGATCAAAGATATGGGAGTGCCAAAAGAGAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004069 GO:0006082 GO:0006103 GO:0006520 GO:0006531 GO:0006536 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009064 GO:0009066 GO:0009987 GO:0016740 GO:0016769 GO:0019752 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0051186 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00270 ko00330 ko00350 ko00360 ko00400 ko00950 ko00960 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map00250 map00270 map00330 map00350 map00360 map00400 map00950 map00960 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

104

Amino Acids

12.1

Weight (kDa)

9.71

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mpp10	PF04006	2 - 63	2.2e-10	Mpp10 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019761)

Species	Orthologous Gene IDs
malus_domestica	MD15G1036300.v1.1
rosa_chinensis	RchiOBHm_Chr3g0470091
rosa_laevigata	RLG00000024297
rosa_rugosa	Rorug03G0106800
rosa_samantha	Rh3AG156000 Rh3BG180000 Rh3CG170700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	34, 218
AluBI	AGCT	2 cut(s)	158, 182
AluI	AGCT	2 cut(s)	158, 182
Alw26I	GTCTC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	26
AxyI	CCTNAGG	1 cut(s)	84
BauI	CACGAG	1 cut(s)	213
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 218
Bse21I	CCTNAGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	34, 218
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	34, 218
BsmAI	GTCTC	1 cut(s)	210
BsmBI	CGTCTC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	281
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	81
BspQI	GCTCTTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	78
BssMI	GATC	1 cut(s)	281
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	2 cut(s)	45, 78
BstDEI	CTNAG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	284
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	281
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 77, 188
BstNSI	RCATGY	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	45, 78
CfoI	GCGC	1 cut(s)	26
CviAII	CATG	2 cut(s)	44, 236
CviJI	RGCY	5 cut(s)	80, 158, 182, 211, 234
CviKI_1	RGCY	5 cut(s)	80, 158, 182, 211, 234
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	283
DpnII	GATC	1 cut(s)	281
DraI	TTTAAA	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco81I	CCTNAGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	2 cut(s)	47, 239
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	2 cut(s)	43, 235
FokI	GGATG	1 cut(s)	211
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	47, 239
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
Hpy188III	TCNNGA	1 cut(s)	83
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 77, 188
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	47, 239
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	281
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	62, 63, 96, 119
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	184, 238
MalI	GATC	1 cut(s)	283
MboI	GATC	1 cut(s)	281
MboII	GAAGA	1 cut(s)	50
MluCI	AATT	1 cut(s)	173
MnlI	CCTC	3 cut(s)	79, 144, 240
MseI	TTAA	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	53, 77, 188
NdeII	GATC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	47, 239
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	184, 238
NspI	RCATGY	1 cut(s)	47
PaeI	GCATGC	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	281
SetI	ASST	4 cut(s)	52, 138, 160, 184
SphI	GCATGC	1 cut(s)	47
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	29
TasI	AATT	1 cut(s)	173
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseFI	GTSAC	2 cut(s)	184, 238
Tsp45I	GTSAC	2 cut(s)	184, 238
TspDTI	ATGAA	1 cut(s)	81
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	47
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.