RLG00000024297
MYB Family

TSL-kinase interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0019761
Physical Location & Seq
Forward (+)
34218053 .. 34220018
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024297

Sequence Viewer

Length: 693 bp
ATGGCTCCACCTGATCCTATTCTTGGAGTTTCTGAAGCATTCAAAACTAGCACAAATGAGAAGAAGCTCAACCTTGGAGCTGGGGCATACTGGACAGAAGAACTCCAGCAATATGAGCTTAATGTTGTTAAAAAGAAAAACGATAGAAAAATGGTCATGTTCAATTCTGATAGTATAGTGATAAAATTTCTGTATTTTCAGAGTGTTGTCTCTTCAACAGCAGCATATAAAAAGTGGGAGAAGGCTGCAATTGCTGGCGTTTCTTTGGTTGCAGATGCTGCTGAGCACTTGGAGCGAACAATCGATGAAGATGTTGGACAAGACAAAAGCAGTGCAGAGAAAAATAGTGCTGTTCCTGTTGGAAATTTTCTGCCTCCTATGCCCAATTTTCCACTAAACATTTATGCAGAGAACAACATAAACAACTCTATGAAGCTTAAACTCCAGTTGCTCCCAATTGATGATAGTACTAGAAAAGCCTTGGAAATGGATAAACATAATCCTCACCTGGCGCTTACGCTCCCTACTCGGAAAAAGAAATCCTCTGGGGAAGTTCAAGTGTGGCATCAGGAGAGCTCATGCTTTTTCCTAATAGTGTCCAGCAGGATAGCCCAGCAGGCTATTTGTCGAATTATGAGATTACTACGTAATTTGGACTCCATGCATCAGAGGATAGGACATATTCTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

231

Amino Acids

25.93

Weight (kDa)

8.95

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019761)

Species Orthologous Gene IDs
malus_domestica MD15G1036300.v1.1
rosa_chinensis RchiOBHm_Chr3g0470091
rosa_laevigata RLG00000024297
rosa_rugosa Rorug03G0106800
rosa_samantha Rh3AG156000 Rh3BG180000 Rh3CG170700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 8
AcsI RAATTY 2 cut(s) 185, 364
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 4 cut(s) 43, 163, 216, 557
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 5 cut(s) 67, 80, 118, 436, 576
AluI AGCT 5 cut(s) 67, 80, 118, 436, 576
Alw21I GWGCWC 2 cut(s) 288, 578
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 1 cut(s) 8
AlwNI CAGNNNCTG 1 cut(s) 278
ApeKI GCWGC 3 cut(s) 221, 245, 278
ApoI RAATTY 2 cut(s) 185, 364
AspLEI GCGC 1 cut(s) 514
AsuHPI GGTGA 1 cut(s) 497
BanII GRGCYC 1 cut(s) 578
Bbv12I GWGCWC 2 cut(s) 288, 578
BbvI GCAGC 3 cut(s) 232, 233, 265
BciT130I CCWGG 1 cut(s) 509
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 2 cut(s) 48, 471
BfoI RGCGCY 1 cut(s) 515
BglI GCCNNNNNGGC 1 cut(s) 617
BisI GCNGC 3 cut(s) 222, 246, 279
BlpI GCTNAGC 1 cut(s) 282
BlsI GCNGC 3 cut(s) 223, 247, 280
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 1 cut(s) 509
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 509
BmsI GCATC 3 cut(s) 265, 574, 673
BpmI CTGGAG 2 cut(s) 89, 428
Bpu1102I GCTNAGC 1 cut(s) 282
Bsa29I ATCGAT 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 647
BsaJI CCNNGG 2 cut(s) 73, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 2 cut(s) 95, 445
BseBI CCWGG 1 cut(s) 509
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 73, 480
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 95, 445
BseXI GCAGC 3 cut(s) 232, 233, 265
BseYI CCCAGC 2 cut(s) 80, 612
BsgI GTGCAG 1 cut(s) 354
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 2 cut(s) 288, 578
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 288, 578
Bsp143I GATC 1 cut(s) 13
Bsp1720I GCTNAGC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 274
BspDI ATCGAT 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 8
BsrI ACTGG 2 cut(s) 95, 445
BssECI CCNNGG 2 cut(s) 73, 480
BssMI GATC 1 cut(s) 13
BssT1I CCWWGG 2 cut(s) 73, 480
Bst2UI CCWGG 1 cut(s) 509
Bst6I CTCTTC 1 cut(s) 217
BstAPI GCANNNNNTGC 1 cut(s) 278
BstBAI YACGTR 1 cut(s) 647
BstC8I GCNNGC 2 cut(s) 256, 618
BstDEI CTNAG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 515
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 6 cut(s) 115, 251, 278, 292, 379, 617
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 507
BstSNI TACGTA 1 cut(s) 647
BstV1I GCAGC 3 cut(s) 232, 233, 265
Bsu15I ATCGAT 1 cut(s) 303
BsuTUI ATCGAT 1 cut(s) 303
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 337
Cac8I GCNNGC 2 cut(s) 256, 618
CaiI CAGNNNCTG 1 cut(s) 278
CfoI GCGC 1 cut(s) 514
ClaI ATCGAT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 468
CviAII CATG 3 cut(s) 157, 579, 661
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 1 cut(s) 282
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Ecl136II GAGCTC 1 cut(s) 576
Eco105I TACGTA 1 cut(s) 647
Eco130I CCWWGG 2 cut(s) 73, 480
Eco24I GRGCYC 1 cut(s) 578
Eco53kI GAGCTC 1 cut(s) 576
Eco57I CTGAAG 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 2 cut(s) 73, 480
EcoT22I ATGCAT 1 cut(s) 666
EcoT38I GRGCYC 1 cut(s) 578
ErhI CCWWGG 2 cut(s) 73, 480
FaeI CATG 3 cut(s) 160, 582, 664
FatI CATG 3 cut(s) 156, 578, 660
Fnu4HI GCNGC 3 cut(s) 222, 246, 279
FriOI GRGCYC 1 cut(s) 578
Fsp4HI GCNGC 3 cut(s) 222, 246, 279
FspBI CTAG 2 cut(s) 48, 471
GlaI GCGC 1 cut(s) 513
GluI GCNGC 3 cut(s) 222, 246, 279
GsaI CCCAGC 2 cut(s) 84, 616
GsuI CTGGAG 2 cut(s) 89, 428
HaeII RGCGCY 1 cut(s) 515
HhaI GCGC 1 cut(s) 514
Hin1II CATG 3 cut(s) 160, 582, 664
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 1 cut(s) 656
HphI GGTGA 1 cut(s) 497
Hpy188I TCNGA 5 cut(s) 34, 169, 201, 531, 669
Hpy188III TCNNGA 1 cut(s) 569
HpyAV CCTTC 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 646
HpyCH4V TGCA 5 cut(s) 248, 272, 335, 407, 664
HpyF10VI GCNNNNNNNGC 6 cut(s) 115, 251, 278, 292, 379, 617
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 646
Hsp92II CATG 3 cut(s) 160, 582, 664
HspAI GCGC 1 cut(s) 512
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 5 cut(s) 10, 77, 292, 456, 525
Lsp1109I GCAGC 3 cut(s) 232, 233, 265
LweI GCATC 3 cut(s) 265, 574, 673
MaeI CTAG 2 cut(s) 48, 471
MaeII ACGT 1 cut(s) 646
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 4 cut(s) 73, 110, 204, 320
MfeI CAATTG 2 cut(s) 249, 456
MhlI GDGCHC 2 cut(s) 288, 578
MluCI AATT 8 cut(s) 163, 185, 249, 364, 385, 456, 630, 649
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 2 cut(s) 295, 340
MnlI CCTC 4 cut(s) 384, 513, 553, 663
Mph1103I ATGCAT 1 cut(s) 666
MseI TTAA 3 cut(s) 120, 129, 438
MspR9I CCNGG 1 cut(s) 509
MunI CAATTG 2 cut(s) 249, 456
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 6 cut(s) 115, 251, 278, 292, 379, 617
NdeII GATC 1 cut(s) 13
NlaIII CATG 3 cut(s) 160, 582, 664
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 666
PctI GAATGC 1 cut(s) 38
PkrI GCNGC 3 cut(s) 223, 247, 280
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
Ppu21I YACGTR 1 cut(s) 647
Psp124BI GAGCTC 1 cut(s) 578
Psp6I CCWGG 1 cut(s) 507
PspFI CCCAGC 2 cut(s) 80, 612
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
SacI GAGCTC 1 cut(s) 578
SaqAI TTAA 3 cut(s) 120, 129, 438
SatI GCNGC 3 cut(s) 222, 246, 279
Sau3AI GATC 1 cut(s) 13
ScaI AGTACT 1 cut(s) 469
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 2 cut(s) 288, 578
SetI ASST 9 cut(s) 13, 69, 75, 82, 120, 438, 510, 578, 649
SfaNI GCATC 3 cut(s) 265, 574, 673
SnaBI TACGTA 1 cut(s) 647
Sse9I AATT 8 cut(s) 163, 185, 249, 364, 385, 456, 630, 649
SspMI CTAG 2 cut(s) 48, 471
SstI GAGCTC 1 cut(s) 578
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 2 cut(s) 73, 480
TaiI ACGT 1 cut(s) 649
TaqI TCGA 2 cut(s) 303, 628
TasI AATT 8 cut(s) 163, 185, 249, 364, 385, 456, 630, 649
TatI WGTACW 1 cut(s) 467
Tru1I TTAA 3 cut(s) 120, 129, 438
Tru9I TTAA 3 cut(s) 120, 129, 438
TscAI CASTG 1 cut(s) 337
TseI GCWGC 3 cut(s) 221, 245, 278
TspDTI ATGAA 2 cut(s) 321, 446
TspRI CASTG 1 cut(s) 337
XapI RAATTY 2 cut(s) 185, 364
XspI CTAG 2 cut(s) 48, 471
ZrmI AGTACT 1 cut(s) 469
Zsp2I ATGCAT 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.