MD15G1068800.v1.1

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0022343
Physical Location & Seq
Forward (+)
4752610 .. 4753092
483 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1068800.v1.1.491

Sequence Viewer

Length: 483 bp
ATGTACCATTCCACCACGGTATTATTACGTGATGGTAGGGTACTCGTTGGAGATAGTAACCCTCATGAAAATTACGAGTTAGCCGACGAGCTATTCCCAACAGAATTGAGATTAGAGGCATTTAGTCCTGATTATTTGGATGCCAAGAACTCGAAGTTGCGTCCGAGAATCATTGATCCCAAATCACAAGCTAAAATCAGTTATGGAAGAAAACTATTCATTCGGTTTTCATTGACGGGAAACGTAGCAACGAATTTGGTGTCGGTGACGATGGTGGCGCCGTCATTTAATACACATTCGTTCTCAATGAATCAGAGGCTGCTGGTTCTTGCAGCGGAGACCGTCAGAAAGGTATGGGAAATGACGTACCAAGTGCAGGTGACGACGCCGGCTTCCGGTAATCTTGCGCCTTCCGGATATTATCTTCTATATGTGGTGCATCAGCAAATTCCAAGTGAAGGCATCTGGGTCCAAATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

161

Amino Acids

18.1

Weight (kDa)

7.99

Isoelectric Point (pI)

23.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxal_oxid_N PF07250 1 - 45 2.6e-16 Glyoxal oxidase N-terminus
GO-like_E_set PF09118 54 - 159 4.2e-29 Galactose oxidase-like, Early set domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022343)

Species Orthologous Gene IDs
malus_domestica MD15G1068800.v1.1
pyrus_communis pycom08g06720
rosa_multiflora Rmu_co7995866.1_g000001
rosa_roxburghii Rroxscaffold_7G00165910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 367
Acc36I ACCTGC 1 cut(s) 367
AccB1I GGYRCC 1 cut(s) 277
AccIII TCCGGA 1 cut(s) 413
AciI CCGC 1 cut(s) 335
AclWI GGATC 1 cut(s) 170
AcsI RAATTY 3 cut(s) 253, 447, 474
AcyI GRCGYC 2 cut(s) 278, 386
AfaI GTAC 3 cut(s) 5, 42, 368
AfiI CCNNNNNNNGG 3 cut(s) 376, 395, 458
AluBI AGCT 2 cut(s) 91, 191
AluI AGCT 2 cut(s) 91, 191
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 1 cut(s) 170
AlwNI CAGNNNCTG 1 cut(s) 319
Aor13HI TCCGGA 1 cut(s) 413
ApeKI GCWGC 2 cut(s) 319, 332
ApoI RAATTY 3 cut(s) 253, 447, 474
ArsI GACNNNNNNTTYG 2 cut(s) 245, 277
AspLEI GCGC 2 cut(s) 280, 409
AspS9I GGNCC 1 cut(s) 469
AsuHPI GGTGA 2 cut(s) 277, 391
AvaII GGWCC 1 cut(s) 469
BanI GGYRCC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 306, 344
BccI CCATC 2 cut(s) 26, 265
BceAI ACGGC 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 332
BfoI RGCGCY 1 cut(s) 281
BfuAI ACCTGC 1 cut(s) 367
BisI GCNGC 2 cut(s) 320, 333
BlsI GCNGC 2 cut(s) 321, 334
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 2 cut(s) 279, 470
BmsI GCATC 3 cut(s) 130, 448, 471
BsaAI YACGTR 1 cut(s) 29
BsaHI GRCGYC 2 cut(s) 278, 386
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 15
BsaWI WCCGGW 2 cut(s) 395, 413
Bsc4I CCNNNNNNNGG 3 cut(s) 376, 395, 458
Bse118I RCCGGY 1 cut(s) 388
BseAI TCCGGA 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 3 cut(s) 376, 395, 458
BseXI GCAGC 2 cut(s) 306, 344
BsgI GTGCAG 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 277
BsiSI CCGG 3 cut(s) 389, 396, 414
BslI CCNNNNNNNGG 3 cut(s) 376, 395, 458
BsmAI GTCTC 1 cut(s) 332
Bso31I GGTCTC 1 cut(s) 332
Bsp13I TCCGGA 1 cut(s) 413
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 1 cut(s) 335
BspEI TCCGGA 1 cut(s) 413
BspHI TCATGA 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 279, 470
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 388
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 1 cut(s) 175
BssNI GRCGYC 2 cut(s) 278, 386
Bst4CI ACNGT 2 cut(s) 19, 343
BstACI GRCGYC 2 cut(s) 278, 386
BstBAI YACGTR 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 390
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 145
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 2 cut(s) 280, 409
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 306, 344
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 1 cut(s) 145
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 390
CaiI CAGNNNCTG 1 cut(s) 319
CciI TCATGA 1 cut(s) 64
CfoI GCGC 2 cut(s) 280, 409
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 469
CseI GACGC 2 cut(s) 149, 394
Csp6I GTAC 3 cut(s) 4, 41, 367
CviAII CATG 1 cut(s) 65
CviJI RGCY 5 cut(s) 83, 91, 191, 319, 392
CviKI_1 RGCY 5 cut(s) 83, 91, 191, 319, 392
CviQI GTAC 3 cut(s) 4, 41, 367
DinI GGCGCC 1 cut(s) 279
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 469
EgeI GGCGCC 1 cut(s) 279
EheI GGCGCC 1 cut(s) 279
FaeI CATG 1 cut(s) 68
FaiI YATR 5 cut(s) 66, 204, 355, 430, 432
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 320, 333
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 320, 333
GlaI GCGC 2 cut(s) 279, 408
GluI GCNGC 2 cut(s) 320, 333
HaeII RGCGCY 1 cut(s) 281
HapII CCGG 3 cut(s) 389, 396, 414
HgaI GACGC 2 cut(s) 149, 394
HhaI GCGC 2 cut(s) 280, 409
Hin1I GRCGYC 2 cut(s) 278, 386
Hin1II CATG 1 cut(s) 68
Hin6I GCGC 2 cut(s) 278, 407
HinP1I GCGC 2 cut(s) 278, 407
HinfI GANTC 2 cut(s) 168, 310
HpaII CCGG 3 cut(s) 389, 396, 414
HphI GGTGA 2 cut(s) 277, 391
Hpy188I TCNGA 3 cut(s) 165, 315, 347
Hpy188III TCNNGA 3 cut(s) 65, 128, 414
Hpy99I CGWCG 2 cut(s) 89, 388
HpyAV CCTTC 2 cut(s) 420, 452
HpyCH4III ACNGT 2 cut(s) 19, 343
HpyCH4IV ACGT 3 cut(s) 28, 243, 365
HpyCH4V TGCA 3 cut(s) 332, 376, 439
HpySE526I ACGT 3 cut(s) 28, 243, 365
Hsp92I GRCGYC 2 cut(s) 278, 386
Hsp92II CATG 1 cut(s) 68
HspAI GCGC 2 cut(s) 278, 407
KasI GGCGCC 1 cut(s) 277
Kpn2I TCCGGA 1 cut(s) 413
KroI GCCGGC 1 cut(s) 388
KroNI GCCGGC 1 cut(s) 390
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 7 cut(s) 141, 308, 362, 402, 409, 427, 451
Lsp1109I GCAGC 2 cut(s) 306, 344
LweI GCATC 3 cut(s) 130, 448, 471
MaeII ACGT 3 cut(s) 28, 243, 365
MaeIII GTNAC 3 cut(s) 56, 265, 379
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 2 cut(s) 219, 416
MluCI AATT 5 cut(s) 70, 104, 253, 447, 474
Mly113I GGCGCC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 3 cut(s) 72, 109, 309
MroI TCCGGA 1 cut(s) 413
MroNI GCCGGC 1 cut(s) 388
MseI TTAA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 3 cut(s) 389, 396, 414
NaeI GCCGGC 1 cut(s) 390
NarI GGCGCC 1 cut(s) 278
NdeII GATC 1 cut(s) 175
NgoMIV GCCGGC 1 cut(s) 388
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 2 cut(s) 279, 470
NmuCI GTSAC 2 cut(s) 265, 379
PagI TCATGA 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 367
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdiI GCCGGC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 168, 310
PkrI GCNGC 2 cut(s) 321, 334
PluTI GGCGCC 1 cut(s) 281
Ppu21I YACGTR 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 279, 470
PspPI GGNCC 1 cut(s) 469
PstNI CAGNNNCTG 1 cut(s) 319
RsaI GTAC 3 cut(s) 5, 42, 368
RsaNI GTAC 3 cut(s) 4, 41, 367
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 320, 333
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 469
SetI ASST 7 cut(s) 31, 93, 193, 246, 354, 368, 381
SfaNI GCATC 3 cut(s) 130, 448, 471
SfoI GGCGCC 1 cut(s) 279
SinI GGWCC 1 cut(s) 469
Sse9I AATT 5 cut(s) 70, 104, 253, 447, 474
SsiI CCGC 1 cut(s) 335
SspDI GGCGCC 1 cut(s) 277
TaaI ACNGT 2 cut(s) 19, 343
TaiI ACGT 3 cut(s) 31, 246, 368
TaqI TCGA 1 cut(s) 152
TasI AATT 5 cut(s) 70, 104, 253, 447, 474
TfiI GAWTC 2 cut(s) 168, 310
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseFI GTSAC 2 cut(s) 265, 379
TseI GCWGC 2 cut(s) 319, 332
Tsp45I GTSAC 2 cut(s) 265, 379
TspDTI ATGAA 4 cut(s) 81, 208, 219, 323
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 3 cut(s) 253, 447, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.