Rroxscaffold_7G00165910

Galactose oxidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0022343
Physical Location & Seq
Reverse (-)
7547972 .. 7548472
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165910.1

Sequence Viewer

Length: 402 bp
ATGGTAGAGTACTTGTTGGGGGTAGCAATCCACATGAGTATTATAGGACTCGGATCTCAAGCTACACTCGAGTATGGAGAAAAGATAGCAATTGAGTTTTCCATCATTGGAGAAATTGCAAAAGATTATGTGTCAGTCGCCATGGTGGCACCCTCGTTTGCTACACATTCATTTTTAATGAATCAAAGGTTGTTGGTACTTGATTCGGAGAATGTGACAAGTGCAGGGGAGTCAATGTTTCAGATTCAGGTAACAACACCAACTTCAGCTAATCTTGCACCCACTGGATATCATCTTTTATTTGTGGTTCATCAAAATATACCAAGTGAAGGAATTTGGGTCCAAATTGTTGTAGGACGAGTTGGAAATCTTGTAAATACGAAAGGTTCACCAAGTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1929 Glyoxal_oxid_N

Protein Analysis

133

Amino Acids

14.29

Weight (kDa)

5.14

Isoelectric Point (pI)

28.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GO-like_E_set PF09118 20 - 116 1.8e-26 Galactose oxidase-like, Early set domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022343)

Species Orthologous Gene IDs
malus_domestica MD15G1068800.v1.1
pyrus_communis pycom08g06720
rosa_multiflora Rmu_co7995866.1_g000001
rosa_roxburghii Rroxscaffold_7G00165910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 148
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 2 cut(s) 11, 198
AfiI CCNNNNNNNGG 1 cut(s) 329
AluBI AGCT 2 cut(s) 62, 269
AluI AGCT 2 cut(s) 62, 269
AlwI GGATC 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 68
ApoI RAATTY 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 381
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 148
BccI CCATC 1 cut(s) 110
BglI GCCNNNNNGGC 1 cut(s) 146
BmcAI AGTACT 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 340
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 2 cut(s) 150, 341
BpuEI CTTGAG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 243
BshNI GGYRCC 1 cut(s) 148
BsiHKCI CYCGRG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 68
Bsp143I GATC 1 cut(s) 53
Bsp19I CCATGG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 150, 341
BspPI GGATC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 141
BstDSI CCRYGG 1 cut(s) 141
BstKTI GATC 1 cut(s) 56
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 146, 275
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BtgI CCRYGG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 340
Csp6I GTAC 2 cut(s) 10, 197
CviAII CATG 2 cut(s) 34, 142
CviJI RGCY 2 cut(s) 62, 269
CviKI_1 RGCY 2 cut(s) 62, 269
CviQI GTAC 2 cut(s) 10, 197
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 141
Eco32I GATATC 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 68
EcoRV GATATC 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 37, 145
FaiI YATR 6 cut(s) 35, 44, 75, 129, 143, 320
FatI CATG 2 cut(s) 33, 141
Hin1II CATG 2 cut(s) 37, 145
HinfI GANTC 5 cut(s) 48, 181, 203, 230, 244
HphI GGTGA 1 cut(s) 381
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 3 cut(s) 53, 208, 243
Hpy8I GTNNAC 1 cut(s) 389
HpyAV CCTTC 1 cut(s) 323
HpyCH4V TGCA 3 cut(s) 119, 224, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 275
Hsp92II CATG 2 cut(s) 37, 145
Kzo9I GATC 1 cut(s) 53
LpnPI CCDG 3 cut(s) 210, 233, 270
MaeIII GTNAC 2 cut(s) 214, 250
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MfeI CAATTG 1 cut(s) 90
MflI RGATCY 1 cut(s) 53
MluCI AATT 4 cut(s) 90, 114, 333, 345
MlyI GAGTC 2 cut(s) 42, 239
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 1 cut(s) 163
MseI TTAA 1 cut(s) 176
MunI CAATTG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 146, 275
NcoI CCATGG 1 cut(s) 141
NdeII GATC 1 cut(s) 53
NlaIII CATG 2 cut(s) 37, 145
NlaIV GGNNCC 2 cut(s) 150, 341
NmuCI GTSAC 1 cut(s) 214
PaeR7I CTCGAG 1 cut(s) 68
PfeI GAWTC 3 cut(s) 181, 203, 244
PleI GAGTC 2 cut(s) 42, 238
PpsI GAGTC 2 cut(s) 42, 238
PspN4I GGNNCC 2 cut(s) 150, 341
PspPI GGNCC 1 cut(s) 340
PspXI VCTCGAGB 1 cut(s) 68
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 2 cut(s) 11, 198
RsaNI GTAC 2 cut(s) 10, 197
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 1 cut(s) 53
Sau96I GGNCC 1 cut(s) 340
ScaI AGTACT 1 cut(s) 11
SchI GAGTC 2 cut(s) 42, 239
SetI ASST 5 cut(s) 64, 191, 252, 271, 388
Sfr274I CTCGAG 1 cut(s) 68
SinI GGWCC 1 cut(s) 340
SlaI CTCGAG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 57, 68
SmoI CTYRAG 2 cut(s) 57, 68
Sse9I AATT 4 cut(s) 90, 114, 333, 345
StyI CCWWGG 1 cut(s) 141
TaqI TCGA 1 cut(s) 69
TasI AATT 4 cut(s) 90, 114, 333, 345
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 3 cut(s) 181, 203, 244
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 3 cut(s) 159, 194, 299
TspRI CASTG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 340
XapI RAATTY 1 cut(s) 333
XhoI CTCGAG 1 cut(s) 68
ZrmI AGTACT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.