MD15G1185500.v1.1
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
14684190 .. 14685123
934 bp
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UTR
Exon/CDS
Intron
MD15G1185500.v1.1.491

Sequence Viewer

Length: 321 bp
ATGAAATGGAAAGATATGCCTGATTTTAAGGCTATGAACTTTCATTTGGAGGATGATCTTAATGCCGTCTTACAGGAGGAAGACCTCGGAACTGCTCACCGAAGACAAGTACAGCATATGATAGACATTGTTTGGGAGGAGATGAATCTGCTGGTTCAAGCTGATCAACCAGGCAACCTGATTGACGATTATATATGCAAATTGAATGCCATACTTTCTCAGAAGGCTTCAGGAATTCTTCAACTGCAGACTCAGTTGGCTCAATTCCTGTGGCATCTGAATGATCACAGCGTTTTAGTATCTTCTTCTTCAAGTAACTGA

Protein Analysis

107

Amino Acids

12.19

Weight (kDa)

4.77

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020923)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15885
malus_domestica MD15G1185500.v1.1
pyrus_communis pycom15g16660
rosa_samantha Rh2AG397100 Rh2CG383600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 111
AgsI TTSAA 4 cut(s) 158, 205, 242, 312
AjnI CCWGG 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
ApoI RAATTY 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 89
BbsI GAAGAC 2 cut(s) 87, 109
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 171
BclI TGATCA 2 cut(s) 163, 283
BfmI CTRYAG 1 cut(s) 245
Bme1390I CCNGG 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 283
BpiI GAAGAC 2 cut(s) 87, 109
BsaJI CCNNGG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 233, 266
BseRI GAGGAG 1 cut(s) 152
BsmI GAATGC 1 cut(s) 211
Bsp143I GATC 3 cut(s) 55, 163, 283
BspCNI CTCAG 2 cut(s) 232, 265
BspMAI CTGCAG 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 3 cut(s) 55, 163, 283
Bst2UI CCWGG 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 219, 252
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 3 cut(s) 58, 166, 286
BstMBI GATC 3 cut(s) 55, 163, 283
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 245
BstV2I GAAGAC 2 cut(s) 87, 109
BtsCI GGATG 1 cut(s) 58
Csp6I GTAC 1 cut(s) 110
CspCI CAANNNNNGTGG 2 cut(s) 251, 286
CviJI RGCY 4 cut(s) 32, 161, 227, 260
CviKI_1 RGCY 4 cut(s) 32, 161, 227, 260
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 2 cut(s) 219, 252
DpnI GATC 3 cut(s) 57, 165, 285
DpnII GATC 3 cut(s) 55, 163, 283
Eco57I CTGAAG 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 169
FaiI YATR 8 cut(s) 17, 35, 117, 119, 192, 194, 196, 212
FauNDI CATATG 1 cut(s) 117
FbaI TGATCA 2 cut(s) 163, 283
FokI GGATG 1 cut(s) 65
HinfI GANTC 2 cut(s) 145, 250
HphI GGTGA 1 cut(s) 89
Hpy188I TCNGA 3 cut(s) 89, 222, 279
Hpy188III TCNNGA 1 cut(s) 231
HpyAV CCTTC 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 198, 247
HpyF3I CTNAG 2 cut(s) 219, 252
Ksp22I TGATCA 2 cut(s) 163, 283
Kzo9I GATC 3 cut(s) 55, 163, 283
LpnPI CCDG 8 cut(s) 33, 59, 137, 156, 183, 191, 216, 281
LweI GCATC 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 314
MalI GATC 3 cut(s) 57, 165, 285
MboI GATC 3 cut(s) 55, 163, 283
MboII GAAGA 6 cut(s) 92, 114, 230, 294, 297, 300
MluCI AATT 3 cut(s) 200, 234, 263
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 4 cut(s) 43, 70, 95, 130
MseI TTAA 2 cut(s) 27, 60
MslI CAYNNNNRTG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 171
NdeI CATATG 1 cut(s) 117
NdeII GATC 3 cut(s) 55, 163, 283
PctI GAATGC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 145
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PstI CTGCAG 1 cut(s) 249
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 2 cut(s) 27, 60
Sau3AI GATC 3 cut(s) 55, 163, 283
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 171
SetI ASST 3 cut(s) 87, 163, 180
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 3 cut(s) 200, 234, 263
StyD4I CCNGG 1 cut(s) 169
TasI AATT 3 cut(s) 200, 234, 263
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 2 cut(s) 27, 60
Tru9I TTAA 2 cut(s) 27, 60
TspDTI ATGAA 4 cut(s) 17, 32, 50, 158
XapI RAATTY 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.