Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010513

Physical Location & Seq

Genomic Coordinates Reverse (-)

14687006 .. 14687991

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1185900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGCAGGCAGAGTCATAGAAACGGCAGTGACCAATCGCCGCCGGAGTCTAGGACTCCGCCGCCGATTGCATCGCGATCGTCGAGCATGAGAAGGAACGGCGACGATCGAGTTTCGCCTAGTGAGCTCAGCCCTGGATTGCTTGATATCCACTCCTTTGATACTGAGTTATTACCTGAGCCTACGAGCAGATCGCGAGGTTTGCCTGAGAATAATAATCTCCTCAAAGAGTTTCTCTGCAGAAAAAGAAGGGGGCAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005813 GO:0005815 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0065007 GO:0071840 GO:0071944 GO:1902850 GO:1903047 GO:1903338

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

88

Amino Acids

9.83

Weight (kDa)

9.75

Isoelectric Point (pI)

108.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010513)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04820 FvH4_1g04820 FvH4_1g04820 FvH4_1g04820 FvH4_1g04820 FvH4_1g04820
malus_domestica	MD02G1047000.v1.1 MD15G1185900.v1.1
prunus_persica	Prupe.7G231000_v2.0.a1
pyrus_communis	pycom02g03930
rosa_chinensis	RchiOBHm_Chr2g0090451
rosa_laevigata	RLG00000016111
rosa_multiflora	Rmu_sc0004514.1_g000020
rosa_roxburghii	Rroxscaffold_2G00151120
rosa_rugosa	Rorug02G0008100 Rorug02G0008100
rosa_samantha	Rh2AG053600 Rh2BG053000 Rh2CG055000 Rh2DG053800
rosa_wichuraiana	Rw2G004340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	76, 196
AciI	CCGC	3 cut(s)	41, 59, 62
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw21I	GWGCWC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	129
BceAI	ACGGC	2 cut(s)	40, 115
BcgI	CGANNNNNNTGC	2 cut(s)	60, 94
BciT130I	CCWGG	1 cut(s)	135
BfaI	CTAG	2 cut(s)	51, 120
BfmI	CTRYAG	1 cut(s)	238
BisI	GCNGC	2 cut(s)	41, 62
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	2 cut(s)	42, 63
Bme1390I	CCNGG	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	177
Bpu1102I	GCTNAGC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	133
BseMII	CTCAG	4 cut(s)	142, 156, 168, 198
BseRI	GAGGAG	1 cut(s)	212
Bsh1236I	CGCG	2 cut(s)	76, 196
Bsh1285I	CGRYCG	2 cut(s)	80, 109
BsiEI	CGRYCG	2 cut(s)	80, 109
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	77, 106, 191
Bsp1720I	GCTNAGC	1 cut(s)	128
Bsp68I	TCGCGA	2 cut(s)	76, 196
BspACI	CCGC	3 cut(s)	41, 59, 62
BspCNI	CTCAG	4 cut(s)	141, 157, 169, 199
BspFNI	CGCG	2 cut(s)	76, 196
BspMAI	CTGCAG	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	3 cut(s)	77, 106, 191
Bst2UI	CCWGG	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	4 cut(s)	128, 165, 177, 207
BstFNI	CGCG	2 cut(s)	76, 196
BstKTI	GATC	3 cut(s)	80, 109, 194
BstMBI	GATC	3 cut(s)	77, 106, 191
BstMCI	CGRYCG	2 cut(s)	80, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 202
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	238
BstUI	CGCG	2 cut(s)	76, 196
BtgZI	GCGATG	1 cut(s)	57
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	34
BtuMI	TCGCGA	2 cut(s)	76, 196
Cac8I	GCNNGC	1 cut(s)	8
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	3 cut(s)	127, 132, 181
CviKI_1	RGCY	3 cut(s)	127, 132, 181
DdeI	CTNAG	4 cut(s)	128, 165, 177, 207
DpnI	GATC	3 cut(s)	79, 108, 193
DpnII	GATC	3 cut(s)	77, 106, 191
EciI	GGCGGA	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	129
Eco32I	GATATC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	1 cut(s)	91
FaiI	YATR	2 cut(s)	18, 89
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	41, 62
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	41, 62
FspBI	CTAG	2 cut(s)	51, 120
GluI	GCNGC	2 cut(s)	41, 62
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	3 cut(s)	13, 47, 55
HpaII	CCGG	1 cut(s)	44
Hpy188III	TCNNGA	2 cut(s)	75, 195
Hpy99I	CGWCG	2 cut(s)	85, 107
HpyAV	CCTTC	2 cut(s)	87, 243
HpyCH4V	TGCA	2 cut(s)	71, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 202
HpyF3I	CTNAG	4 cut(s)	128, 165, 177, 207
Hsp92II	CATG	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	77, 106, 191
LpnPI	CCDG	5 cut(s)	57, 120, 147, 189, 219
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	2 cut(s)	51, 120
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	3 cut(s)	79, 108, 193
MboI	GATC	3 cut(s)	77, 106, 191
MhlI	GDGCHC	1 cut(s)	129
MlyI	GAGTC	3 cut(s)	22, 49, 56
MnlI	CCTC	2 cut(s)	191, 233
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	2 cut(s)	76, 196
MwoI	GCNNNNNNNGC	2 cut(s)	124, 202
NdeII	GATC	3 cut(s)	77, 106, 191
NlaIII	CATG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	29
NruI	TCGCGA	2 cut(s)	76, 196
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	42, 63
Ple19I	CGATCG	2 cut(s)	80, 109
PleI	GAGTC	3 cut(s)	21, 49, 55
PpsI	GAGTC	3 cut(s)	21, 49, 55
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	242
PvuI	CGATCG	2 cut(s)	80, 109
RruI	TCGCGA	2 cut(s)	76, 196
SacI	GAGCTC	1 cut(s)	129
SatI	GCNGC	2 cut(s)	41, 62
Sau3AI	GATC	3 cut(s)	77, 106, 191
SchI	GAGTC	3 cut(s)	22, 49, 56
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	3 cut(s)	129, 178, 202
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	238
SsiI	CCGC	3 cut(s)	41, 59, 62
SspMI	CTAG	2 cut(s)	51, 120
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	133
TaqI	TCGA	2 cut(s)	83, 109
TauI	GCSGC	2 cut(s)	43, 64
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	29
TspRI	CASTG	1 cut(s)	34
XspI	CTAG	2 cut(s)	51, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.