MD15G1282700.v1.1

Multidrug and

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
25533796 .. 25535483
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1282700.v1.1.491

Sequence Viewer

Length: 1551 bp
ATGAGGTGTAACAAGATTGGTGAAGCTACCTCACATATATATTTTCTGCTTTTGTCCAAGCTATTCGACCACCCCATTAATGACGATGAAGAAGATGGACAAGATTCTCAGCATTGGCCATCCACCATTTCTTCAACGGTTCTTGAAGAGATCAAGCAGCTATACAACATAGCTCTGCCAATGATTTTGACAGGCCTCATGGTGTATGCAAAATTAGCGATTTCAATGTTATTTTTGGGAAAATCGGGAAAGGGGGAATTAGCAGGAGGGAGCCTAGCCATTAGTGTGGCCAACATTAGCGGTTACTCGGTTCTTGCCGGCCTCGCTTCAGGCATGGAAGGGATCTCATCACAAGCATTTGGAGCCCAACAATGGCCTCTCATGACTCACATCTTCCAACGCACCATCACCATCCTCATCTTCACTTCTATCCCCATTTCCATCTTGTGGTTCAATTGTGAGCCGTTACTTATCTTTTCGGGCCAAAACCCAACAATCTCATCCACAGCCACAACCTACCTCACCTTCTCTATCCCAACTTTATTTTTCCAATCCATCATAAATCCCCTCAGAATCCACCTTAGAACCCAAAGCATCACATTCCCTTTAATGCTTAGTGCTGTAGTGGCCCTTGTGATTCATGCCCCTGCCAGCTATATCCTTGCATGGCATTTTGGCTTAGGCATTCGGGGTGTTGCCCTTGCTGGAACCTTAACCGACATGAGCTGTCTCATAACTCTTATTCTATACTTGTGTGTTTCAAATATCAGCACAAACACACGGCAATGGTGGTCCATCCGATGTTGCTTCAATGGCTGGAGCCAAATTATATGTCAAGCAGTCCCAAGTTGTGTTTCTGTGTGCTTAGAGTGGTGGTGGTATGAGATTATGATTATCCTATCAGGGTTTCTCAGTAATGCAGCTGAAGCTATGTCTACCATGGGAATTATAATTCAGGCCACCGCGTTGGTCTACCAATTCCCCTATGCGTTAAGTCAAGCTGTGTCGACTCGGGTGGGGAATGAGATAGGCGCCAACTATCCAAAACAAGCTAAGCAATCATCGTTTATTGCATTGTATTTTTCCATTCTCACAGGGCTTATAACATCCACTTTCTTGCTCACAATGCAGAATGTTTGGGGGGAAATTTTCACGGCTGATCGAGCGGTTATATCACTGACTGCTTCTGTGTTGCCTGTGGTAGGGTTGTGTGAGCTTGGGAACTGCCCTCAAACCACTGTTTGTGGTGTGTTGAAAGGTAGTGCGAGGCCAATGTTGGGTGCGATTATCAATTTTGGTGCTTTCTATGTTGTTGGGTTACCTATGGCACTTTTAATGGCGTTTGTGATGCATTTAGGCTTGTTGGGCCTATGGTTAGGCCTTCTAGCTGCCCAGATGGTTTGCTTTCTTGTGATGGTGATTGTGTTGATCAGGACTGACTGGGTGGCACTAGTGGAGAGATCTAGAGAGCTCACTAGTGCTGGTGTGGAGGAGATTTTAGCGAACGAATTCTATGAGGACTTAGTATATGCTATTATGCTAGTTAATTAG

Protein Analysis

517

Amino Acids

56.48

Weight (kDa)

5.62

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 60 - 220 6.5e-28 MatE
MatE PF01554 282 - 444 3.5e-29 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016734)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15940 FvH4_1g15940
malus_domestica MD15G1282700.v1.1
prunus_persica Prupe.7G134400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0105331
rosa_laevigata RLG00000017417
rosa_multiflora Rmu_sc0001407.1_g000017
rosa_roxburghii Rroxscaffold_2G00138280
rosa_rugosa Rorug02G0127700
rosa_samantha Rh2AG178300 Rh2BG186800 Rh2CG182900 Rh2DG184300
rosa_wichuraiana Rw2G014000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 950, 1103
AccB1I GGYRCC 1 cut(s) 1031
AccB7I CCANNNNNTGG 1 cut(s) 447
AccBSI CCGCTC 1 cut(s) 1166
AccI GTMKAC 3 cut(s) 935, 972, 1007
AccII CGCG 1 cut(s) 965
AciI CCGC 3 cut(s) 300, 963, 1166
AclWI GGATC 1 cut(s) 350
AcoI YGGCCR 2 cut(s) 116, 288
AcsI RAATTY 2 cut(s) 1146, 1508
AcuI CTGAAG 2 cut(s) 312, 945
AcyI GRCGYC 1 cut(s) 1032
AfiI CCNNNNNNNGG 4 cut(s) 372, 447, 1202, 1277
AgsI TTSAA 7 cut(s) 135, 146, 225, 454, 762, 811, 1255
AhlI ACTAGT 2 cut(s) 1450, 1475
AjuI GAANNNNNNNTTGG 2 cut(s) 838, 870
Alw21I GWGCWC 1 cut(s) 1473
Alw26I GTCTC 1 cut(s) 734
AlwI GGATC 1 cut(s) 350
Ama87I CYCGRG 1 cut(s) 1011
ApeKI GCWGC 3 cut(s) 157, 920, 1388
ApoI RAATTY 2 cut(s) 1146, 1508
ArsI GACNNNNNNTTYG 2 cut(s) 817, 849
AseI ATTAAT 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 1508
AspLEI GCGC 1 cut(s) 1034
AspS9I GGNCC 4 cut(s) 481, 628, 792, 1366
AsuHPI GGTGA 4 cut(s) 32, 400, 514, 1429
AvaI CYCGRG 1 cut(s) 1011
AvaII GGWCC 1 cut(s) 792
BalI TGGCCA 2 cut(s) 118, 290
BanI GGYRCC 1 cut(s) 1031
BanII GRGCYC 2 cut(s) 367, 1473
Bbv12I GWGCWC 1 cut(s) 1473
BbvI GCAGC 3 cut(s) 169, 932, 1375
BccI CCATC 9 cut(s) 89, 127, 413, 419, 449, 563, 803, 1390, 1408
BceAI ACGGC 3 cut(s) 448, 797, 1170
BclI TGATCA 1 cut(s) 1428
BcoDI GTCTC 1 cut(s) 734
BcuI ACTAGT 2 cut(s) 1450, 1475
BfaI CTAG 6 cut(s) 275, 1385, 1451, 1464, 1476, 1541
BfmI CTRYAG 1 cut(s) 621
BfoI RGCGCY 1 cut(s) 1035
BglII AGATCT 1 cut(s) 1460
BisI GCNGC 3 cut(s) 158, 921, 1389
BlpI GCTNAGC 1 cut(s) 1053
BlsI GCNGC 3 cut(s) 159, 922, 1390
Bme18I GGWCC 1 cut(s) 792
BmeT110I CYCGRG 1 cut(s) 1011
BmgT120I GGNCC 4 cut(s) 481, 628, 792, 1366
BmiI GGNNCC 5 cut(s) 272, 364, 709, 821, 1033
BmrI ACTGGG 1 cut(s) 1450
BmsI GCATC 2 cut(s) 603, 1338
BmuI ACTGGG 1 cut(s) 1450
BpmI CTGGAG 1 cut(s) 838
Bpu10I CCTNAGC 1 cut(s) 679
Bpu1102I GCTNAGC 1 cut(s) 1053
BsaHI GRCGYC 1 cut(s) 1032
BsaJI CCNNGG 1 cut(s) 939
Bsc4I CCNNNNNNNGG 4 cut(s) 372, 447, 1202, 1277
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 1445
Bse3DI GCAATG 1 cut(s) 791
BseDI CCNNGG 1 cut(s) 939
BseGI GGATG 5 cut(s) 119, 411, 500, 795, 1106
BseLI CCNNNNNNNGG 4 cut(s) 372, 447, 1202, 1277
BseMI GCAATG 1 cut(s) 791
BseMII CTCAG 3 cut(s) 122, 583, 925
BseNI ACTGG 1 cut(s) 1445
BseRI GAGGAG 1 cut(s) 1505
BseXI GCAGC 3 cut(s) 169, 932, 1375
Bsh1236I CGCG 1 cut(s) 965
BshNI GGYRCC 1 cut(s) 1031
BsiHKAI GWGCWC 1 cut(s) 1473
BsiHKCI CYCGRG 1 cut(s) 1011
BsiSI CCGG 1 cut(s) 318
BslFI GGGAC 1 cut(s) 827
BslI CCNNNNNNNGG 4 cut(s) 372, 447, 1202, 1277
BsmAI GTCTC 1 cut(s) 734
BsmFI GGGAC 1 cut(s) 827
BsmI GAATGC 1 cut(s) 684
BsoBI CYCGRG 1 cut(s) 1011
Bsp1286I GDGCHC 2 cut(s) 367, 1473
Bsp143I GATC 5 cut(s) 150, 342, 1159, 1428, 1460
Bsp1720I GCTNAGC 1 cut(s) 1053
Bsp19I CCATGG 1 cut(s) 939
BspACI CCGC 3 cut(s) 300, 963, 1166
BspCNI CTCAG 3 cut(s) 121, 582, 924
BspFNI CGCG 1 cut(s) 965
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 5 cut(s) 272, 364, 709, 821, 1033
BspPI GGATC 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 1031
BsrBI CCGCTC 1 cut(s) 1166
BsrDI GCAATG 1 cut(s) 791
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 1 cut(s) 1445
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 939
BssMI GATC 5 cut(s) 150, 342, 1159, 1428, 1460
BssNI GRCGYC 1 cut(s) 1032
BssT1I CCWWGG 1 cut(s) 939
Bst4CI ACNGT 2 cut(s) 139, 1240
Bst6I CTCTTC 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 1032
BstC8I GCNNGC 2 cut(s) 319, 652
BstDEI CTNAG 9 cut(s) 108, 569, 581, 614, 679, 865, 911, 1053, 1522
BstDSI CCRYGG 1 cut(s) 939
BstEII GGTNACC 1 cut(s) 1317
BstENI CCTNNNNNAGG 1 cut(s) 1200
BstF5I GGATG 5 cut(s) 119, 411, 500, 795, 1106
BstFNI CGCG 1 cut(s) 965
BstH2I RGCGCY 1 cut(s) 1035
BstHHI GCGC 1 cut(s) 1034
BstKTI GATC 5 cut(s) 153, 345, 1162, 1431, 1463
BstMAI GTCTC 1 cut(s) 734
BstMBI GATC 5 cut(s) 150, 342, 1159, 1428, 1460
BstMWI GCNNNNNNNGC 9 cut(s) 215, 323, 362, 626, 813, 926, 1126, 1163, 1365
BstPI GGTNACC 1 cut(s) 1317
BstSFI CTRYAG 1 cut(s) 621
BstUI CGCG 1 cut(s) 965
BstV1I GCAGC 3 cut(s) 169, 932, 1375
BstX2I RGATCY 2 cut(s) 342, 1460
BstXI CCANNNNNNTGG 2 cut(s) 286, 967
BstYI RGATCY 2 cut(s) 342, 1460
BtgI CCRYGG 1 cut(s) 939
BtsCI GGATG 5 cut(s) 119, 411, 500, 795, 1106
BtsIMutI CAGTG 2 cut(s) 1175, 1236
Cac8I GCNNGC 2 cut(s) 319, 652
CciI TCATGA 1 cut(s) 381
CfoI GCGC 1 cut(s) 1034
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 4 cut(s) 481, 628, 792, 1366
CviAII CATG 7 cut(s) 199, 334, 382, 641, 666, 721, 940
DdeI CTNAG 9 cut(s) 108, 569, 581, 614, 679, 865, 911, 1053, 1522
DinI GGCGCC 1 cut(s) 1033
DpnI GATC 5 cut(s) 152, 344, 1161, 1430, 1462
DpnII GATC 5 cut(s) 150, 342, 1159, 1428, 1460
EaeI YGGCCR 2 cut(s) 116, 288
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Ecl136II GAGCTC 1 cut(s) 1471
Eco130I CCWWGG 1 cut(s) 939
Eco147I AGGCCT 2 cut(s) 195, 1380
Eco24I GRGCYC 2 cut(s) 367, 1473
Eco47I GGWCC 1 cut(s) 792
Eco53kI GAGCTC 1 cut(s) 1471
Eco57I CTGAAG 2 cut(s) 312, 945
Eco88I CYCGRG 1 cut(s) 1011
Eco91I GGTNACC 1 cut(s) 1317
EcoICRI GAGCTC 1 cut(s) 1471
EcoNI CCTNNNNNAGG 1 cut(s) 1200
EcoO65I GGTNACC 1 cut(s) 1317
EcoRI GAATTC 1 cut(s) 1508
EcoT14I CCWWGG 1 cut(s) 939
EcoT22I ATGCAT 1 cut(s) 1353
EcoT38I GRGCYC 2 cut(s) 367, 1473
EgeI GGCGCC 1 cut(s) 1033
EheI GGCGCC 1 cut(s) 1033
ErhI CCWWGG 1 cut(s) 939
FaeI CATG 7 cut(s) 202, 337, 385, 644, 669, 724, 943
FaqI GGGAC 1 cut(s) 827
FatI CATG 7 cut(s) 198, 333, 381, 640, 665, 720, 939
FbaI TGATCA 1 cut(s) 1428
FblI GTMKAC 3 cut(s) 935, 972, 1007
Fnu4HI GCNGC 3 cut(s) 158, 921, 1389
FokI GGATG 5 cut(s) 106, 398, 487, 782, 1093
FriOI GRGCYC 2 cut(s) 367, 1473
Fsp4HI GCNGC 3 cut(s) 158, 921, 1389
FspBI CTAG 6 cut(s) 275, 1385, 1451, 1464, 1476, 1541
GlaI GCGC 1 cut(s) 1033
GluI GCNGC 3 cut(s) 158, 921, 1389
GsuI CTGGAG 1 cut(s) 838
HaeII RGCGCY 1 cut(s) 1035
HapII CCGG 1 cut(s) 318
HhaI GCGC 1 cut(s) 1034
Hin1I GRCGYC 1 cut(s) 1032
Hin1II CATG 7 cut(s) 202, 337, 385, 644, 669, 724, 943
Hin6I GCGC 1 cut(s) 1032
HinP1I GCGC 1 cut(s) 1032
HincII GTYRAC 1 cut(s) 1008
HindII GTYRAC 1 cut(s) 1008
HinfI GANTC 5 cut(s) 104, 385, 573, 637, 1009
HpaII CCGG 1 cut(s) 318
HphI GGTGA 4 cut(s) 32, 400, 514, 1429
Hpy166II GTNNAC 3 cut(s) 936, 973, 1008
Hpy188I TCNGA 2 cut(s) 572, 800
Hpy188III TCNNGA 5 cut(s) 143, 246, 382, 1432, 1464
Hpy8I GTNNAC 3 cut(s) 936, 973, 1008
HpyAV CCTTC 3 cut(s) 332, 535, 1391
HpyCH4III ACNGT 2 cut(s) 139, 1240
HpyCH4V TGCA 6 cut(s) 209, 665, 920, 1073, 1129, 1351
HpyF10VI GCNNNNNNNGC 9 cut(s) 215, 323, 362, 626, 813, 926, 1126, 1163, 1365
HpyF3I CTNAG 9 cut(s) 108, 569, 581, 614, 679, 865, 911, 1053, 1522
Hsp92I GRCGYC 1 cut(s) 1032
Hsp92II CATG 7 cut(s) 202, 337, 385, 644, 669, 724, 943
HspAI GCGC 1 cut(s) 1032
KasI GGCGCC 1 cut(s) 1031
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 1428
Kzo9I GATC 5 cut(s) 150, 342, 1159, 1428, 1460
LmnI GCTCC 3 cut(s) 270, 362, 819
Lsp1109I GCAGC 3 cut(s) 169, 932, 1375
LweI GCATC 2 cut(s) 603, 1338
MaeI CTAG 6 cut(s) 275, 1385, 1451, 1464, 1476, 1541
MaeIII GTNAC 4 cut(s) 8, 302, 465, 1317
MalI GATC 5 cut(s) 152, 344, 1161, 1430, 1462
MbiI CCGCTC 1 cut(s) 1166
MboI GATC 5 cut(s) 150, 342, 1159, 1428, 1460
MboII GAAGA 6 cut(s) 101, 104, 123, 158, 385, 412
MfeI CAATTG 1 cut(s) 454
MflI RGATCY 2 cut(s) 342, 1460
MhlI GDGCHC 2 cut(s) 367, 1473
MlsI TGGCCA 2 cut(s) 118, 290
MluNI TGGCCA 2 cut(s) 118, 290
Mly113I GGCGCC 1 cut(s) 1032
MlyI GAGTC 2 cut(s) 379, 1003
MmeI TCCRAC 1 cut(s) 421
Mox20I TGGCCA 2 cut(s) 118, 290
Mph1103I ATGCAT 1 cut(s) 1353
MroNI GCCGGC 1 cut(s) 317
MroXI GAANNNNTTC 1 cut(s) 1508
MscI TGGCCA 2 cut(s) 118, 290
MseI TTAA 6 cut(s) 78, 608, 713, 992, 1334, 1545
MslI CAYNNNNRTG 2 cut(s) 284, 784
Msp20I TGGCCA 2 cut(s) 118, 290
MspA1I CMGCKG 1 cut(s) 923
MspI CCGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 454
Mva1269I GAATGC 1 cut(s) 684
MvnI CGCG 1 cut(s) 965
MwoI GCNNNNNNNGC 9 cut(s) 215, 323, 362, 626, 813, 926, 1126, 1163, 1365
NaeI GCCGGC 1 cut(s) 319
NarI GGCGCC 1 cut(s) 1032
NcoI CCATGG 1 cut(s) 939
NdeII GATC 5 cut(s) 150, 342, 1159, 1428, 1460
NgoMIV GCCGGC 1 cut(s) 317
NlaIII CATG 7 cut(s) 202, 337, 385, 644, 669, 724, 943
NlaIV GGNNCC 5 cut(s) 272, 364, 709, 821, 1033
NsiI ATGCAT 1 cut(s) 1353
PagI TCATGA 1 cut(s) 381
PceI AGGCCT 2 cut(s) 195, 1380
PctI GAATGC 1 cut(s) 684
PdiI GCCGGC 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 1508
PfeI GAWTC 3 cut(s) 104, 573, 637
PflMI CCANNNNNTGG 1 cut(s) 447
PkrI GCNGC 3 cut(s) 159, 922, 1390
PleI GAGTC 2 cut(s) 379, 1003
PluTI GGCGCC 1 cut(s) 1035
PpsI GAGTC 2 cut(s) 379, 1003
PshBI ATTAAT 1 cut(s) 78
PsiI TTATAA 2 cut(s) 950, 1103
Psp124BI GAGCTC 1 cut(s) 1473
PspEI GGTNACC 1 cut(s) 1317
PspN4I GGNNCC 5 cut(s) 272, 364, 709, 821, 1033
PspPI GGNCC 4 cut(s) 481, 628, 792, 1366
PsuI RGATCY 2 cut(s) 342, 1460
PvuII CAGCTG 1 cut(s) 923
RseI CAYNNNNRTG 2 cut(s) 284, 784
SacI GAGCTC 1 cut(s) 1473
SalI GTCGAC 1 cut(s) 1006
SaqAI TTAA 6 cut(s) 78, 608, 713, 992, 1334, 1545
SatI GCNGC 3 cut(s) 158, 921, 1389
Sau3AI GATC 5 cut(s) 150, 342, 1159, 1428, 1460
Sau96I GGNCC 4 cut(s) 481, 628, 792, 1366
SchI GAGTC 2 cut(s) 379, 1003
SduI GDGCHC 2 cut(s) 367, 1473
SfaNI GCATC 2 cut(s) 603, 1338
SfcI CTRYAG 1 cut(s) 621
SfoI GGCGCC 1 cut(s) 1033
SinI GGWCC 1 cut(s) 792
SmiMI CAYNNNNRTG 2 cut(s) 284, 784
SpeI ACTAGT 2 cut(s) 1450, 1475
SseBI AGGCCT 2 cut(s) 195, 1380
SsiI CCGC 3 cut(s) 300, 963, 1166
SspDI GGCGCC 1 cut(s) 1031
SspMI CTAG 6 cut(s) 275, 1385, 1451, 1464, 1476, 1541
SstI GAGCTC 1 cut(s) 1473
StuI AGGCCT 2 cut(s) 195, 1380
StyI CCWWGG 1 cut(s) 939
TaaI ACNGT 2 cut(s) 139, 1240
TaqI TCGA 3 cut(s) 66, 1007, 1162
TfiI GAWTC 3 cut(s) 104, 573, 637
Tru1I TTAA 6 cut(s) 78, 608, 713, 992, 1334, 1545
Tru9I TTAA 6 cut(s) 78, 608, 713, 992, 1334, 1545
TscAI CASTG 2 cut(s) 1182, 1243
TseI GCWGC 3 cut(s) 157, 920, 1388
TspDTI ATGAA 2 cut(s) 102, 629
TspRI CASTG 2 cut(s) 1182, 1243
Van91I CCANNNNNTGG 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 792
VspI ATTAAT 1 cut(s) 78
XagI CCTNNNNNAGG 1 cut(s) 1200
XapI RAATTY 2 cut(s) 1146, 1508
XbaI TCTAGA 1 cut(s) 1463
XmiI GTMKAC 3 cut(s) 935, 972, 1007
XmnI GAANNNNTTC 1 cut(s) 1508
XspI CTAG 6 cut(s) 275, 1385, 1451, 1464, 1476, 1541
Zsp2I ATGCAT 1 cut(s) 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.