Multidrug and
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g15940 FvH4_1g15940 |
| malus_domestica | MD15G1282700.v1.1 |
| prunus_persica | Prupe.7G134400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0105331 |
| rosa_laevigata | RLG00000017417 |
| rosa_multiflora | Rmu_sc0001407.1_g000017 |
| rosa_roxburghii | Rroxscaffold_2G00138280 |
| rosa_rugosa | Rorug02G0127700 |
| rosa_samantha | Rh2AG178300 Rh2BG186800 Rh2CG182900 Rh2DG184300 |
| rosa_wichuraiana | Rw2G014000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 950, 1103 |
| AccB1I | GGYRCC | 1 cut(s) | 1031 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 447 |
| AccBSI | CCGCTC | 1 cut(s) | 1166 |
| AccI | GTMKAC | 3 cut(s) | 935, 972, 1007 |
| AccII | CGCG | 1 cut(s) | 965 |
| AciI | CCGC | 3 cut(s) | 300, 963, 1166 |
| AclWI | GGATC | 1 cut(s) | 350 |
| AcoI | YGGCCR | 2 cut(s) | 116, 288 |
| AcsI | RAATTY | 2 cut(s) | 1146, 1508 |
| AcuI | CTGAAG | 2 cut(s) | 312, 945 |
| AcyI | GRCGYC | 1 cut(s) | 1032 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 372, 447, 1202, 1277 |
| AgsI | TTSAA | 7 cut(s) | 135, 146, 225, 454, 762, 811, 1255 |
| AhlI | ACTAGT | 2 cut(s) | 1450, 1475 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 838, 870 |
| Alw21I | GWGCWC | 1 cut(s) | 1473 |
| Alw26I | GTCTC | 1 cut(s) | 734 |
| AlwI | GGATC | 1 cut(s) | 350 |
| Ama87I | CYCGRG | 1 cut(s) | 1011 |
| ApeKI | GCWGC | 3 cut(s) | 157, 920, 1388 |
| ApoI | RAATTY | 2 cut(s) | 1146, 1508 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 817, 849 |
| AseI | ATTAAT | 1 cut(s) | 78 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1508 |
| AspLEI | GCGC | 1 cut(s) | 1034 |
| AspS9I | GGNCC | 4 cut(s) | 481, 628, 792, 1366 |
| AsuHPI | GGTGA | 4 cut(s) | 32, 400, 514, 1429 |
| AvaI | CYCGRG | 1 cut(s) | 1011 |
| AvaII | GGWCC | 1 cut(s) | 792 |
| BalI | TGGCCA | 2 cut(s) | 118, 290 |
| BanI | GGYRCC | 1 cut(s) | 1031 |
| BanII | GRGCYC | 2 cut(s) | 367, 1473 |
| Bbv12I | GWGCWC | 1 cut(s) | 1473 |
| BbvI | GCAGC | 3 cut(s) | 169, 932, 1375 |
| BccI | CCATC | 9 cut(s) | 89, 127, 413, 419, 449, 563, 803, 1390, 1408 |
| BceAI | ACGGC | 3 cut(s) | 448, 797, 1170 |
| BclI | TGATCA | 1 cut(s) | 1428 |
| BcoDI | GTCTC | 1 cut(s) | 734 |
| BcuI | ACTAGT | 2 cut(s) | 1450, 1475 |
| BfaI | CTAG | 6 cut(s) | 275, 1385, 1451, 1464, 1476, 1541 |
| BfmI | CTRYAG | 1 cut(s) | 621 |
| BfoI | RGCGCY | 1 cut(s) | 1035 |
| BglII | AGATCT | 1 cut(s) | 1460 |
| BisI | GCNGC | 3 cut(s) | 158, 921, 1389 |
| BlpI | GCTNAGC | 1 cut(s) | 1053 |
| BlsI | GCNGC | 3 cut(s) | 159, 922, 1390 |
| Bme18I | GGWCC | 1 cut(s) | 792 |
| BmeT110I | CYCGRG | 1 cut(s) | 1011 |
| BmgT120I | GGNCC | 4 cut(s) | 481, 628, 792, 1366 |
| BmiI | GGNNCC | 5 cut(s) | 272, 364, 709, 821, 1033 |
| BmrI | ACTGGG | 1 cut(s) | 1450 |
| BmsI | GCATC | 2 cut(s) | 603, 1338 |
| BmuI | ACTGGG | 1 cut(s) | 1450 |
| BpmI | CTGGAG | 1 cut(s) | 838 |
| Bpu10I | CCTNAGC | 1 cut(s) | 679 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1053 |
| BsaHI | GRCGYC | 1 cut(s) | 1032 |
| BsaJI | CCNNGG | 1 cut(s) | 939 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 372, 447, 1202, 1277 |
| Bse118I | RCCGGY | 1 cut(s) | 317 |
| Bse1I | ACTGG | 1 cut(s) | 1445 |
| Bse3DI | GCAATG | 1 cut(s) | 791 |
| BseDI | CCNNGG | 1 cut(s) | 939 |
| BseGI | GGATG | 5 cut(s) | 119, 411, 500, 795, 1106 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 372, 447, 1202, 1277 |
| BseMI | GCAATG | 1 cut(s) | 791 |
| BseMII | CTCAG | 3 cut(s) | 122, 583, 925 |
| BseNI | ACTGG | 1 cut(s) | 1445 |
| BseRI | GAGGAG | 1 cut(s) | 1505 |
| BseXI | GCAGC | 3 cut(s) | 169, 932, 1375 |
| Bsh1236I | CGCG | 1 cut(s) | 965 |
| BshNI | GGYRCC | 1 cut(s) | 1031 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1473 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1011 |
| BsiSI | CCGG | 1 cut(s) | 318 |
| BslFI | GGGAC | 1 cut(s) | 827 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 372, 447, 1202, 1277 |
| BsmAI | GTCTC | 1 cut(s) | 734 |
| BsmFI | GGGAC | 1 cut(s) | 827 |
| BsmI | GAATGC | 1 cut(s) | 684 |
| BsoBI | CYCGRG | 1 cut(s) | 1011 |
| Bsp1286I | GDGCHC | 2 cut(s) | 367, 1473 |
| Bsp143I | GATC | 5 cut(s) | 150, 342, 1159, 1428, 1460 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1053 |
| Bsp19I | CCATGG | 1 cut(s) | 939 |
| BspACI | CCGC | 3 cut(s) | 300, 963, 1166 |
| BspCNI | CTCAG | 3 cut(s) | 121, 582, 924 |
| BspFNI | CGCG | 1 cut(s) | 965 |
| BspHI | TCATGA | 1 cut(s) | 381 |
| BspLI | GGNNCC | 5 cut(s) | 272, 364, 709, 821, 1033 |
| BspPI | GGATC | 1 cut(s) | 350 |
| BspT107I | GGYRCC | 1 cut(s) | 1031 |
| BsrBI | CCGCTC | 1 cut(s) | 1166 |
| BsrDI | GCAATG | 1 cut(s) | 791 |
| BsrFI | RCCGGY | 1 cut(s) | 317 |
| BsrI | ACTGG | 1 cut(s) | 1445 |
| BssAI | RCCGGY | 1 cut(s) | 317 |
| BssECI | CCNNGG | 1 cut(s) | 939 |
| BssMI | GATC | 5 cut(s) | 150, 342, 1159, 1428, 1460 |
| BssNI | GRCGYC | 1 cut(s) | 1032 |
| BssT1I | CCWWGG | 1 cut(s) | 939 |
| Bst4CI | ACNGT | 2 cut(s) | 139, 1240 |
| Bst6I | CTCTTC | 1 cut(s) | 141 |
| BstACI | GRCGYC | 1 cut(s) | 1032 |
| BstC8I | GCNNGC | 2 cut(s) | 319, 652 |
| BstDEI | CTNAG | 9 cut(s) | 108, 569, 581, 614, 679, 865, 911, 1053, 1522 |
| BstDSI | CCRYGG | 1 cut(s) | 939 |
| BstEII | GGTNACC | 1 cut(s) | 1317 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1200 |
| BstF5I | GGATG | 5 cut(s) | 119, 411, 500, 795, 1106 |
| BstFNI | CGCG | 1 cut(s) | 965 |
| BstH2I | RGCGCY | 1 cut(s) | 1035 |
| BstHHI | GCGC | 1 cut(s) | 1034 |
| BstKTI | GATC | 5 cut(s) | 153, 345, 1162, 1431, 1463 |
| BstMAI | GTCTC | 1 cut(s) | 734 |
| BstMBI | GATC | 5 cut(s) | 150, 342, 1159, 1428, 1460 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 215, 323, 362, 626, 813, 926, 1126, 1163, 1365 |
| BstPI | GGTNACC | 1 cut(s) | 1317 |
| BstSFI | CTRYAG | 1 cut(s) | 621 |
| BstUI | CGCG | 1 cut(s) | 965 |
| BstV1I | GCAGC | 3 cut(s) | 169, 932, 1375 |
| BstX2I | RGATCY | 2 cut(s) | 342, 1460 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 286, 967 |
| BstYI | RGATCY | 2 cut(s) | 342, 1460 |
| BtgI | CCRYGG | 1 cut(s) | 939 |
| BtsCI | GGATG | 5 cut(s) | 119, 411, 500, 795, 1106 |
| BtsIMutI | CAGTG | 2 cut(s) | 1175, 1236 |
| Cac8I | GCNNGC | 2 cut(s) | 319, 652 |
| CciI | TCATGA | 1 cut(s) | 381 |
| CfoI | GCGC | 1 cut(s) | 1034 |
| Cfr10I | RCCGGY | 1 cut(s) | 317 |
| Cfr13I | GGNCC | 4 cut(s) | 481, 628, 792, 1366 |
| CviAII | CATG | 7 cut(s) | 199, 334, 382, 641, 666, 721, 940 |
| DdeI | CTNAG | 9 cut(s) | 108, 569, 581, 614, 679, 865, 911, 1053, 1522 |
| DinI | GGCGCC | 1 cut(s) | 1033 |
| DpnI | GATC | 5 cut(s) | 152, 344, 1161, 1430, 1462 |
| DpnII | GATC | 5 cut(s) | 150, 342, 1159, 1428, 1460 |
| EaeI | YGGCCR | 2 cut(s) | 116, 288 |
| Eam1104I | CTCTTC | 1 cut(s) | 141 |
| EarI | CTCTTC | 1 cut(s) | 141 |
| Ecl136II | GAGCTC | 1 cut(s) | 1471 |
| Eco130I | CCWWGG | 1 cut(s) | 939 |
| Eco147I | AGGCCT | 2 cut(s) | 195, 1380 |
| Eco24I | GRGCYC | 2 cut(s) | 367, 1473 |
| Eco47I | GGWCC | 1 cut(s) | 792 |
| Eco53kI | GAGCTC | 1 cut(s) | 1471 |
| Eco57I | CTGAAG | 2 cut(s) | 312, 945 |
| Eco88I | CYCGRG | 1 cut(s) | 1011 |
| Eco91I | GGTNACC | 1 cut(s) | 1317 |
| EcoICRI | GAGCTC | 1 cut(s) | 1471 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1200 |
| EcoO65I | GGTNACC | 1 cut(s) | 1317 |
| EcoRI | GAATTC | 1 cut(s) | 1508 |
| EcoT14I | CCWWGG | 1 cut(s) | 939 |
| EcoT22I | ATGCAT | 1 cut(s) | 1353 |
| EcoT38I | GRGCYC | 2 cut(s) | 367, 1473 |
| EgeI | GGCGCC | 1 cut(s) | 1033 |
| EheI | GGCGCC | 1 cut(s) | 1033 |
| ErhI | CCWWGG | 1 cut(s) | 939 |
| FaeI | CATG | 7 cut(s) | 202, 337, 385, 644, 669, 724, 943 |
| FaqI | GGGAC | 1 cut(s) | 827 |
| FatI | CATG | 7 cut(s) | 198, 333, 381, 640, 665, 720, 939 |
| FbaI | TGATCA | 1 cut(s) | 1428 |
| FblI | GTMKAC | 3 cut(s) | 935, 972, 1007 |
| Fnu4HI | GCNGC | 3 cut(s) | 158, 921, 1389 |
| FokI | GGATG | 5 cut(s) | 106, 398, 487, 782, 1093 |
| FriOI | GRGCYC | 2 cut(s) | 367, 1473 |
| Fsp4HI | GCNGC | 3 cut(s) | 158, 921, 1389 |
| FspBI | CTAG | 6 cut(s) | 275, 1385, 1451, 1464, 1476, 1541 |
| GlaI | GCGC | 1 cut(s) | 1033 |
| GluI | GCNGC | 3 cut(s) | 158, 921, 1389 |
| GsuI | CTGGAG | 1 cut(s) | 838 |
| HaeII | RGCGCY | 1 cut(s) | 1035 |
| HapII | CCGG | 1 cut(s) | 318 |
| HhaI | GCGC | 1 cut(s) | 1034 |
| Hin1I | GRCGYC | 1 cut(s) | 1032 |
| Hin1II | CATG | 7 cut(s) | 202, 337, 385, 644, 669, 724, 943 |
| Hin6I | GCGC | 1 cut(s) | 1032 |
| HinP1I | GCGC | 1 cut(s) | 1032 |
| HincII | GTYRAC | 1 cut(s) | 1008 |
| HindII | GTYRAC | 1 cut(s) | 1008 |
| HinfI | GANTC | 5 cut(s) | 104, 385, 573, 637, 1009 |
| HpaII | CCGG | 1 cut(s) | 318 |
| HphI | GGTGA | 4 cut(s) | 32, 400, 514, 1429 |
| Hpy166II | GTNNAC | 3 cut(s) | 936, 973, 1008 |
| Hpy188I | TCNGA | 2 cut(s) | 572, 800 |
| Hpy188III | TCNNGA | 5 cut(s) | 143, 246, 382, 1432, 1464 |
| Hpy8I | GTNNAC | 3 cut(s) | 936, 973, 1008 |
| HpyAV | CCTTC | 3 cut(s) | 332, 535, 1391 |
| HpyCH4III | ACNGT | 2 cut(s) | 139, 1240 |
| HpyCH4V | TGCA | 6 cut(s) | 209, 665, 920, 1073, 1129, 1351 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 215, 323, 362, 626, 813, 926, 1126, 1163, 1365 |
| HpyF3I | CTNAG | 9 cut(s) | 108, 569, 581, 614, 679, 865, 911, 1053, 1522 |
| Hsp92I | GRCGYC | 1 cut(s) | 1032 |
| Hsp92II | CATG | 7 cut(s) | 202, 337, 385, 644, 669, 724, 943 |
| HspAI | GCGC | 1 cut(s) | 1032 |
| KasI | GGCGCC | 1 cut(s) | 1031 |
| KroI | GCCGGC | 1 cut(s) | 317 |
| KroNI | GCCGGC | 1 cut(s) | 319 |
| Ksp22I | TGATCA | 1 cut(s) | 1428 |
| Kzo9I | GATC | 5 cut(s) | 150, 342, 1159, 1428, 1460 |
| LmnI | GCTCC | 3 cut(s) | 270, 362, 819 |
| Lsp1109I | GCAGC | 3 cut(s) | 169, 932, 1375 |
| LweI | GCATC | 2 cut(s) | 603, 1338 |
| MaeI | CTAG | 6 cut(s) | 275, 1385, 1451, 1464, 1476, 1541 |
| MaeIII | GTNAC | 4 cut(s) | 8, 302, 465, 1317 |
| MalI | GATC | 5 cut(s) | 152, 344, 1161, 1430, 1462 |
| MbiI | CCGCTC | 1 cut(s) | 1166 |
| MboI | GATC | 5 cut(s) | 150, 342, 1159, 1428, 1460 |
| MboII | GAAGA | 6 cut(s) | 101, 104, 123, 158, 385, 412 |
| MfeI | CAATTG | 1 cut(s) | 454 |
| MflI | RGATCY | 2 cut(s) | 342, 1460 |
| MhlI | GDGCHC | 2 cut(s) | 367, 1473 |
| MlsI | TGGCCA | 2 cut(s) | 118, 290 |
| MluNI | TGGCCA | 2 cut(s) | 118, 290 |
| Mly113I | GGCGCC | 1 cut(s) | 1032 |
| MlyI | GAGTC | 2 cut(s) | 379, 1003 |
| MmeI | TCCRAC | 1 cut(s) | 421 |
| Mox20I | TGGCCA | 2 cut(s) | 118, 290 |
| Mph1103I | ATGCAT | 1 cut(s) | 1353 |
| MroNI | GCCGGC | 1 cut(s) | 317 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1508 |
| MscI | TGGCCA | 2 cut(s) | 118, 290 |
| MseI | TTAA | 6 cut(s) | 78, 608, 713, 992, 1334, 1545 |
| MslI | CAYNNNNRTG | 2 cut(s) | 284, 784 |
| Msp20I | TGGCCA | 2 cut(s) | 118, 290 |
| MspA1I | CMGCKG | 1 cut(s) | 923 |
| MspI | CCGG | 1 cut(s) | 318 |
| MunI | CAATTG | 1 cut(s) | 454 |
| Mva1269I | GAATGC | 1 cut(s) | 684 |
| MvnI | CGCG | 1 cut(s) | 965 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 215, 323, 362, 626, 813, 926, 1126, 1163, 1365 |
| NaeI | GCCGGC | 1 cut(s) | 319 |
| NarI | GGCGCC | 1 cut(s) | 1032 |
| NcoI | CCATGG | 1 cut(s) | 939 |
| NdeII | GATC | 5 cut(s) | 150, 342, 1159, 1428, 1460 |
| NgoMIV | GCCGGC | 1 cut(s) | 317 |
| NlaIII | CATG | 7 cut(s) | 202, 337, 385, 644, 669, 724, 943 |
| NlaIV | GGNNCC | 5 cut(s) | 272, 364, 709, 821, 1033 |
| NsiI | ATGCAT | 1 cut(s) | 1353 |
| PagI | TCATGA | 1 cut(s) | 381 |
| PceI | AGGCCT | 2 cut(s) | 195, 1380 |
| PctI | GAATGC | 1 cut(s) | 684 |
| PdiI | GCCGGC | 1 cut(s) | 319 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1508 |
| PfeI | GAWTC | 3 cut(s) | 104, 573, 637 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 447 |
| PkrI | GCNGC | 3 cut(s) | 159, 922, 1390 |
| PleI | GAGTC | 2 cut(s) | 379, 1003 |
| PluTI | GGCGCC | 1 cut(s) | 1035 |
| PpsI | GAGTC | 2 cut(s) | 379, 1003 |
| PshBI | ATTAAT | 1 cut(s) | 78 |
| PsiI | TTATAA | 2 cut(s) | 950, 1103 |
| Psp124BI | GAGCTC | 1 cut(s) | 1473 |
| PspEI | GGTNACC | 1 cut(s) | 1317 |
| PspN4I | GGNNCC | 5 cut(s) | 272, 364, 709, 821, 1033 |
| PspPI | GGNCC | 4 cut(s) | 481, 628, 792, 1366 |
| PsuI | RGATCY | 2 cut(s) | 342, 1460 |
| PvuII | CAGCTG | 1 cut(s) | 923 |
| RseI | CAYNNNNRTG | 2 cut(s) | 284, 784 |
| SacI | GAGCTC | 1 cut(s) | 1473 |
| SalI | GTCGAC | 1 cut(s) | 1006 |
| SaqAI | TTAA | 6 cut(s) | 78, 608, 713, 992, 1334, 1545 |
| SatI | GCNGC | 3 cut(s) | 158, 921, 1389 |
| Sau3AI | GATC | 5 cut(s) | 150, 342, 1159, 1428, 1460 |
| Sau96I | GGNCC | 4 cut(s) | 481, 628, 792, 1366 |
| SchI | GAGTC | 2 cut(s) | 379, 1003 |
| SduI | GDGCHC | 2 cut(s) | 367, 1473 |
| SfaNI | GCATC | 2 cut(s) | 603, 1338 |
| SfcI | CTRYAG | 1 cut(s) | 621 |
| SfoI | GGCGCC | 1 cut(s) | 1033 |
| SinI | GGWCC | 1 cut(s) | 792 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 284, 784 |
| SpeI | ACTAGT | 2 cut(s) | 1450, 1475 |
| SseBI | AGGCCT | 2 cut(s) | 195, 1380 |
| SsiI | CCGC | 3 cut(s) | 300, 963, 1166 |
| SspDI | GGCGCC | 1 cut(s) | 1031 |
| SspMI | CTAG | 6 cut(s) | 275, 1385, 1451, 1464, 1476, 1541 |
| SstI | GAGCTC | 1 cut(s) | 1473 |
| StuI | AGGCCT | 2 cut(s) | 195, 1380 |
| StyI | CCWWGG | 1 cut(s) | 939 |
| TaaI | ACNGT | 2 cut(s) | 139, 1240 |
| TaqI | TCGA | 3 cut(s) | 66, 1007, 1162 |
| TfiI | GAWTC | 3 cut(s) | 104, 573, 637 |
| Tru1I | TTAA | 6 cut(s) | 78, 608, 713, 992, 1334, 1545 |
| Tru9I | TTAA | 6 cut(s) | 78, 608, 713, 992, 1334, 1545 |
| TscAI | CASTG | 2 cut(s) | 1182, 1243 |
| TseI | GCWGC | 3 cut(s) | 157, 920, 1388 |
| TspDTI | ATGAA | 2 cut(s) | 102, 629 |
| TspRI | CASTG | 2 cut(s) | 1182, 1243 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 447 |
| VpaK11BI | GGWCC | 1 cut(s) | 792 |
| VspI | ATTAAT | 1 cut(s) | 78 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1200 |
| XapI | RAATTY | 2 cut(s) | 1146, 1508 |
| XbaI | TCTAGA | 1 cut(s) | 1463 |
| XmiI | GTMKAC | 3 cut(s) | 935, 972, 1007 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1508 |
| XspI | CTAG | 6 cut(s) | 275, 1385, 1451, 1464, 1476, 1541 |
| Zsp2I | ATGCAT | 1 cut(s) | 1353 |