MD16G1023500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0021168
Physical Location & Seq
Reverse (-)
1711275 .. 1711706
432 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1023500.v1.1.491

Sequence Viewer

Length: 150 bp
ATGGTGGAAATCTTAAGCGGCAGTAATTTCATGCGCTCCCTGAAACAATCAAGGGCGAGCGCTATCCTCCCGATCTCCGCCGCGTCCGCATTCGCCTTCGGCTCCTGCAAGGAAGGCTGGTACTACCGCTGCCTCGGAGTCGACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.32

Weight (kDa)

8.8

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021168)

Species Orthologous Gene IDs
malus_domestica MD16G1023500.v1.1
prunus_persica Prupe.1G329400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0441831
rosa_samantha Rh4DG395000
rosa_wichuraiana Rw4G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 83
AciI CCGC 5 cut(s) 18, 78, 81, 87, 127
AfaI GTAC 1 cut(s) 122
AfeI AGCGCT 1 cut(s) 61
AflII CTTAAG 1 cut(s) 13
Aor51HI AGCGCT 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 129
AspLEI GCGC 2 cut(s) 36, 62
BbvI GCAGC 1 cut(s) 116
BfoI RGCGCY 1 cut(s) 63
BfrI CTTAAG 1 cut(s) 13
BisI GCNGC 3 cut(s) 19, 81, 130
BlsI GCNGC 3 cut(s) 20, 82, 131
BmiI GGNNCC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 116
Bsh1236I CGCG 1 cut(s) 83
BsmI GAATGC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 5 cut(s) 18, 78, 81, 87, 127
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 103
BspTI CTTAAG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 72
BstAFI CTTAAG 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 58
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 2 cut(s) 36, 62
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstMWI GCNNNNNNNGC 2 cut(s) 86, 114
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 58
CfoI GCGC 2 cut(s) 36, 62
CseI GACGC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 31
CviJI RGCY 2 cut(s) 102, 117
CviKI_1 RGCY 2 cut(s) 102, 117
CviQI GTAC 1 cut(s) 121
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
EciI GGCGGA 1 cut(s) 67
Eco47III AGCGCT 1 cut(s) 61
FaeI CATG 1 cut(s) 34
FaiI YATR 1 cut(s) 32
FatI CATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 19, 81, 130
Fsp4HI GCNGC 3 cut(s) 19, 81, 130
GlaI GCGC 2 cut(s) 35, 61
GluI GCNGC 3 cut(s) 19, 81, 130
HaeII RGCGCY 1 cut(s) 63
HgaI GACGC 1 cut(s) 72
HhaI GCGC 2 cut(s) 36, 62
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 2 cut(s) 34, 60
HinP1I GCGC 2 cut(s) 34, 60
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 138
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 106, 107
HpyCH4V TGCA 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 114
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 2 cut(s) 34, 60
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 2 cut(s) 41, 107
LpnPI CCDG 3 cut(s) 53, 103, 118
Lsp1109I GCAGC 1 cut(s) 116
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MluCI AATT 1 cut(s) 25
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 2 cut(s) 77, 143
MseI TTAA 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 129
MspCI CTTAAG 1 cut(s) 13
Mva1269I GAATGC 1 cut(s) 89
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 86, 114
NdeII GATC 1 cut(s) 72
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 103
PctI GAATGC 1 cut(s) 89
PkrI GCNGC 3 cut(s) 20, 82, 131
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 103
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 3 cut(s) 19, 81, 130
Sau3AI GATC 1 cut(s) 72
SchI GAGTC 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 1 cut(s) 25
SsiI CCGC 5 cut(s) 18, 78, 81, 87, 127
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 25
TauI GCSGC 2 cut(s) 21, 83
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseI GCWGC 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.