Rh4DG395000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
61186575 .. 61186727
153 bp
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UTR
Exon/CDS
Intron
Rh4DG395000.1

Sequence Viewer

Length: 153 bp
ATGGTGGAAATCTTAAGCATCAGTAATTTCATGCGCTCGATTGCACAATCGAGGGCGAGCGCTGCTATTCTCCCTGTTTCTGCCGCCTCTGCTTTCTCCTTCGGCTCCTGCAAGGAAGGCTGGTACTACCGCTGCCTCGGCGTCGACCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.39

Weight (kDa)

7.8

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021168)

Species Orthologous Gene IDs
malus_domestica MD16G1023500.v1.1
prunus_persica Prupe.1G329400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0441831
rosa_samantha Rh4DG395000
rosa_wichuraiana Rw4G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AciI CCGC 2 cut(s) 84, 130
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 125
AfeI AGCGCT 1 cut(s) 61
AflII CTTAAG 1 cut(s) 13
Aor51HI AGCGCT 1 cut(s) 61
ApeKI GCWGC 2 cut(s) 62, 132
AspLEI GCGC 2 cut(s) 36, 62
BbvI GCAGC 2 cut(s) 49, 119
BfoI RGCGCY 1 cut(s) 63
BfrI CTTAAG 1 cut(s) 13
BisI GCNGC 3 cut(s) 63, 84, 133
BlsI GCNGC 3 cut(s) 64, 85, 134
BmiI GGNNCC 1 cut(s) 106
BmsI GCATC 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 49, 119
BspACI CCGC 2 cut(s) 84, 130
BspLI GGNNCC 1 cut(s) 106
BspTI CTTAAG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 2 cut(s) 36, 62
BstMWI GCNNNNNNNGC 4 cut(s) 62, 89, 117, 138
BstV1I GCAGC 2 cut(s) 49, 119
Cac8I GCNNGC 1 cut(s) 58
CfoI GCGC 2 cut(s) 36, 62
CseI GACGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 31
CviJI RGCY 2 cut(s) 105, 120
CviKI_1 RGCY 2 cut(s) 105, 120
CviQI GTAC 1 cut(s) 124
Eco47III AGCGCT 1 cut(s) 61
FaeI CATG 1 cut(s) 34
FaiI YATR 1 cut(s) 32
FatI CATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 63, 84, 133
Fsp4HI GCNGC 3 cut(s) 63, 84, 133
GlaI GCGC 2 cut(s) 35, 61
GluI GCNGC 3 cut(s) 63, 84, 133
HaeII RGCGCY 1 cut(s) 63
HgaI GACGC 1 cut(s) 130
HhaI GCGC 2 cut(s) 36, 62
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 2 cut(s) 34, 60
HinP1I GCGC 2 cut(s) 34, 60
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 145
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 109, 110
HpyCH4V TGCA 2 cut(s) 44, 111
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 89, 117, 138
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 2 cut(s) 34, 60
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 3 cut(s) 87, 106, 121
Lsp1109I GCAGC 2 cut(s) 49, 119
LweI GCATC 1 cut(s) 27
MluCI AATT 1 cut(s) 25
MnlI CCTC 3 cut(s) 45, 97, 146
MseI TTAA 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 132
MspCI CTTAAG 1 cut(s) 13
MwoI GCNNNNNNNGC 4 cut(s) 62, 89, 117, 138
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 106
NmeAIII GCCGAG 1 cut(s) 117
PkrI GCNGC 3 cut(s) 64, 85, 134
PspN4I GGNNCC 1 cut(s) 106
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SalI GTCGAC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 3 cut(s) 63, 84, 133
SfaNI GCATC 1 cut(s) 27
SgeI CNNG 9 cut(s) 43, 49, 63, 69, 86, 120, 124, 133, 149
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 1 cut(s) 25
SsiI CCGC 2 cut(s) 84, 130
TaqI TCGA 3 cut(s) 38, 50, 144
TasI AATT 1 cut(s) 25
TauI GCSGC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseI GCWGC 2 cut(s) 62, 132
TspDTI ATGAA 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.