Prupe.1G329400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
31275416 .. 31275565
150 bp
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UTR
Exon/CDS
Intron
Prupe.1G329400.1

Sequence Viewer

Length: 150 bp
ATGGTGGAAATCTTAAGCATCAGTAATTTCATGCGCTCCCTTTTACAATCAAGGGCGAGCGCTTTTCTCCCGATCTCTGCTGCGTCTGCTTTCGCTTTCGGCTCCTGCAAGGAAGGCTGGTACTACCGCTGCCTCGGCGTCGACCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.39

Weight (kDa)

7.8

Isoelectric Point (pI)

54.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021168)

Species Orthologous Gene IDs
malus_domestica MD16G1023500.v1.1
prunus_persica Prupe.1G329400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0441831
rosa_samantha Rh4DG395000
rosa_wichuraiana Rw4G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AciI CCGC 1 cut(s) 127
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 122
AfeI AGCGCT 1 cut(s) 61
AflII CTTAAG 1 cut(s) 13
Aor51HI AGCGCT 1 cut(s) 61
ApeKI GCWGC 2 cut(s) 80, 129
AspLEI GCGC 2 cut(s) 36, 62
BbvI GCAGC 2 cut(s) 67, 116
BfoI RGCGCY 1 cut(s) 63
BfrI CTTAAG 1 cut(s) 13
BisI GCNGC 2 cut(s) 81, 130
BlsI GCNGC 2 cut(s) 82, 131
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 67, 116
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 103
BspTI CTTAAG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 72
BssNI GRCGYC 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 138
BstAFI CTTAAG 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 2 cut(s) 36, 62
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstMWI GCNNNNNNNGC 3 cut(s) 86, 114, 135
BstV1I GCAGC 2 cut(s) 67, 116
Cac8I GCNNGC 1 cut(s) 58
CfoI GCGC 2 cut(s) 36, 62
CseI GACGC 2 cut(s) 72, 127
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 31
CviJI RGCY 2 cut(s) 102, 117
CviKI_1 RGCY 2 cut(s) 102, 117
CviQI GTAC 1 cut(s) 121
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eco47III AGCGCT 1 cut(s) 61
FaeI CATG 1 cut(s) 34
FaiI YATR 1 cut(s) 32
FatI CATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 81, 130
Fsp4HI GCNGC 2 cut(s) 81, 130
GlaI GCGC 2 cut(s) 35, 61
GluI GCNGC 2 cut(s) 81, 130
HaeII RGCGCY 1 cut(s) 63
HgaI GACGC 2 cut(s) 72, 127
HhaI GCGC 2 cut(s) 36, 62
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 2 cut(s) 34, 60
HinP1I GCGC 2 cut(s) 34, 60
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 114, 135
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 2 cut(s) 34, 60
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 2 cut(s) 41, 107
LpnPI CCDG 2 cut(s) 103, 118
Lsp1109I GCAGC 2 cut(s) 67, 116
LweI GCATC 1 cut(s) 27
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MluCI AATT 1 cut(s) 25
MnlI CCTC 1 cut(s) 143
MseI TTAA 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 129
MspCI CTTAAG 1 cut(s) 13
MwoI GCNNNNNNNGC 3 cut(s) 86, 114, 135
NdeII GATC 1 cut(s) 72
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 114
PkrI GCNGC 2 cut(s) 82, 131
PspN4I GGNNCC 1 cut(s) 103
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 2 cut(s) 81, 130
Sau3AI GATC 1 cut(s) 72
SfaNI GCATC 1 cut(s) 27
SgeI CNNG 8 cut(s) 43, 63, 69, 82, 117, 121, 130, 146
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 1 cut(s) 25
SsiI CCGC 1 cut(s) 127
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 25
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseI GCWGC 2 cut(s) 80, 129
TspDTI ATGAA 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.