Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0024358

Physical Location & Seq

Genomic Coordinates Forward (+)

2470202 .. 2471621

Gene Structure 1420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1034400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGTTATTGTGCCGTCTGGACTTTTACCAAATCCGGCGCTTGAAACTTCAGTTCTGTCTGCATGTATCTTGGCGACGAAAACAATCTACGCAATACCAACTGGGTTTGGTGGTGCAGTAAGTACTAGAGTTTCAAATGAACTAGGAGCTGGTAACCCACAAGGTGCTCGTATAGCTACTTTTGCTGCGATGTTTCTTGCAGTCTTAAATGCAAGTATAATAATAACGATCCTTTTTGCCTGCCGGAAAGCATTTGGTTACACTTTTAGCAACGAGAAGGAAGTCATCGATTACATCACAACCATGGTCCCTCTACTTTGCCTGTCTGTTATACTGGACAGTATGTACGGGGTCCTTTCAGGTATTGTTAGAGGAACTGGGTGGCAGCATATAGGGGCTTGGGTAAACCTTGGAGCATTTTATCTTTGTGGAATCCCCGTTGCTATCGCATTGGCTTTCTGGTTACAGCTAAGAAGAAGAGGCCTTTGGATTGGAATACAAGTTGGTACTTTTGGGCAAGTCAGTCTGCTCTCTTTAGTAACAATTTGTGCAAATTGGGAAAAGCAGGCAAGCAACGCAAGGGAGAGGATATTTGAGGGAAGGCCCCCAGAAGTTAATGGCTTGTGCGACAAGGCAGAGAGTAGTGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

218

Amino Acids

23.25

Weight (kDa)

8.18

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	13 - 148	5.4e-23	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024358)

Species	Orthologous Gene IDs
malus_domestica	MD16G1034400.v1.1
pyrus_communis	pycom16g02890
rosa_samantha	Rh4BG335100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	33
AdeI	CACNNNGTG	1 cut(s)	164
AfaI	GTAC	3 cut(s)	124, 347, 508
AgsI	TTSAA	2 cut(s)	44, 135
AjuI	GAANNNNNNNTTGG	2 cut(s)	469, 501
AluBI	AGCT	3 cut(s)	149, 176, 469
AluI	AGCT	3 cut(s)	149, 176, 469
Alw21I	GWGCWC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	2 cut(s)	481, 602
ApeKI	GCWGC	2 cut(s)	185, 385
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	3 cut(s)	307, 352, 603
AvaII	GGWCC	2 cut(s)	307, 352
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	172, 397
BfaI	CTAG	2 cut(s)	126, 143
BfoI	RGCGCY	1 cut(s)	41
BisI	GCNGC	2 cut(s)	186, 386
BlsI	GCNGC	2 cut(s)	187, 387
BmcAI	AGTACT	1 cut(s)	124
Bme18I	GGWCC	2 cut(s)	307, 352
BmgT120I	GGNCC	3 cut(s)	307, 352, 603
BmiI	GGNNCC	3 cut(s)	309, 353, 605
BmrI	ACTGGG	2 cut(s)	111, 387
BmuI	ACTGGG	2 cut(s)	111, 387
Bsa29I	ATCGAT	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	303, 409
Bse1I	ACTGG	3 cut(s)	106, 339, 382
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	303, 409
BseNI	ACTGG	3 cut(s)	106, 339, 382
BseXI	GCAGC	2 cut(s)	172, 397
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	483, 604
BshVI	ATCGAT	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	35, 244
BslFI	GGGAC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	483, 604
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	228
Bsp19I	CCATGG	1 cut(s)	303
BspANI	GGCC	2 cut(s)	483, 604
BspDI	ATCGAT	1 cut(s)	288
BspLI	GGNNCC	3 cut(s)	309, 353, 605
BspPI	GGATC	1 cut(s)	223
BsrI	ACTGG	3 cut(s)	106, 339, 382
BssECI	CCNNGG	2 cut(s)	303, 409
BssMI	GATC	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	303, 409
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	472
BstC8I	GCNNGC	3 cut(s)	241, 567, 571
BstDEI	CTNAG	1 cut(s)	470
BstDSI	CCRYGG	1 cut(s)	303
BstEII	GGTNACC	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 575
BstNSI	RCATGY	1 cut(s)	66
BstPI	GGTNACC	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	172, 397
Bsu15I	ATCGAT	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	483, 604
BsuTUI	ATCGAT	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	303
BtgZI	GCGATG	1 cut(s)	203
Cac8I	GCNNGC	3 cut(s)	241, 567, 571
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	3 cut(s)	307, 352, 603
ClaI	ATCGAT	1 cut(s)	288
Csp6I	GTAC	3 cut(s)	123, 346, 507
CviAII	CATG	2 cut(s)	63, 304
CviJI	RGCY	8 cut(s)	149, 176, 398, 455, 469, 483, 604, 621
CviKI_1	RGCY	8 cut(s)	149, 176, 398, 455, 469, 483, 604, 621
CviQI	GTAC	3 cut(s)	123, 346, 507
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
DraIII	CACNNNGTG	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	472
Eco130I	CCWWGG	2 cut(s)	303, 409
Eco147I	AGGCCT	1 cut(s)	483
Eco47I	GGWCC	2 cut(s)	307, 352
Eco57I	CTGAAG	1 cut(s)	33
Eco91I	GGTNACC	1 cut(s)	152
EcoO109I	RGGNCCY	2 cut(s)	352, 603
EcoO65I	GGTNACC	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	303, 409
ErhI	CCWWGG	2 cut(s)	303, 409
FaeI	CATG	2 cut(s)	66, 307
FaiI	YATR	8 cut(s)	64, 173, 218, 305, 332, 344, 390, 392
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	2 cut(s)	62, 303
Fnu4HI	GCNGC	2 cut(s)	186, 386
Fsp4HI	GCNGC	2 cut(s)	186, 386
FspBI	CTAG	2 cut(s)	126, 143
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	2 cut(s)	186, 386
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	483, 604
HapII	CCGG	2 cut(s)	35, 244
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	66, 307
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	432
HpaII	CCGG	2 cut(s)	35, 244
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188III	TCNNGA	1 cut(s)	18
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	271, 594
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	5 cut(s)	62, 116, 200, 212, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 575
HpyF3I	CTNAG	1 cut(s)	470
Hsp92II	CATG	2 cut(s)	66, 307
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	146, 413
Lsp1109I	GCAGC	2 cut(s)	172, 397
MaeI	CTAG	2 cut(s)	126, 143
MaeIII	GTNAC	4 cut(s)	152, 257, 462, 538
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	2 cut(s)	486, 489
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	2 cut(s)	543, 553
MnlI	CCTC	5 cut(s)	321, 365, 473, 579, 589
MseI	TTAA	2 cut(s)	206, 615
MslI	CAYNNNNRTG	1 cut(s)	302
MspI	CCGG	2 cut(s)	35, 244
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 575
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	2 cut(s)	66, 307
NlaIV	GGNNCC	3 cut(s)	309, 353, 605
NspI	RCATGY	1 cut(s)	66
PceI	AGGCCT	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	432
PkrI	GCNGC	2 cut(s)	187, 387
PpuMI	RGGWCCY	1 cut(s)	352
Psp5II	RGGWCCY	1 cut(s)	352
PspEI	GGTNACC	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	309, 353, 605
PspPI	GGNCC	3 cut(s)	307, 352, 603
PspPPI	RGGWCCY	1 cut(s)	352
RsaI	GTAC	3 cut(s)	124, 347, 508
RsaNI	GTAC	3 cut(s)	123, 346, 507
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	206, 615
SatI	GCNGC	2 cut(s)	186, 386
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	3 cut(s)	307, 352, 603
ScaI	AGTACT	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	6 cut(s)	151, 166, 178, 364, 411, 471
SinI	GGWCC	2 cut(s)	307, 352
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	2 cut(s)	543, 553
SseBI	AGGCCT	1 cut(s)	483
SspMI	CTAG	2 cut(s)	126, 143
StuI	AGGCCT	1 cut(s)	483
StyI	CCWWGG	2 cut(s)	303, 409
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	1 cut(s)	288
TasI	AATT	2 cut(s)	543, 553
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	432
Tru1I	TTAA	2 cut(s)	206, 615
Tru9I	TTAA	2 cut(s)	206, 615
TseI	GCWGC	2 cut(s)	185, 385
TspDTI	ATGAA	1 cut(s)	153
VpaK11BI	GGWCC	2 cut(s)	307, 352
XceI	RCATGY	1 cut(s)	66
XspI	CTAG	2 cut(s)	126, 143
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.