Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0024358

Physical Location & Seq

Genomic Coordinates Forward (+)

49878377 .. 49879702

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG335100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAGGTATTCTATGGAATCAAAGAGTTCTTCAGCTTTGCTATCCCTTCTGCAGTCATGATATGCCTTGAGTGGTGGTCATTTGAGATGCTTATCTTGCTGTCCGGAATTCTACAAAATCCGGCTCTTGAAACTTCAGTTCTGTCTGTATGTCTCCAGACCATTGTGACACTCTATTACATACCATATGGGTTTGCTGCTGCAGCAAGTGTTAGAGTTTCCAACGAACTAGGAGCTGGTAACCCACAAGGTGCTCGTATAGCTACATGTGCTGCAATGTTTCTTGCAATCACAGAGACAACTATAGTAACCACAACTCTCTTTGCTTGCCGAAATGTATTTGGTTATGTTTTTAGCAATGAGCAAGAAGTTGTTGATTATGTCACAACCATGGCTCCTCTAGTTTGCTTGTCTGTTTTACTAGACAGCTTGCAAGCCGTCCTTTCAGGTATTGCTAGAGGGTGTGGGTGGCAGCACATAGGGGCTTACATAAACCTTGCAGCATTTTATATTTTTGGAATTCCAATTGCTGCCTTACTGGCTTTCTGGGTACAACTAGGAGGAAGGGGCCTTTGGATTGGAATCCAAGTTGGTGCTTTTGTGCAAACAATTCTGCTTGCTTTTGTCACGACTTGTACAAATTGGGATAAACAGGCACAGAAGGCGAGGGCTAGGATATATGAGGGAAGCTCTCTCGAAGCTAATGGATTGCTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

239

Amino Acids

26.01

Weight (kDa)

5.11

Isoelectric Point (pI)

25.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	16 - 178	5.6e-27	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024358)

Species	Orthologous Gene IDs
malus_domestica	MD16G1034400.v1.1
pyrus_communis	pycom16g02890
rosa_samantha	Rh4BG335100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	104
AcsI	RAATTY	2 cut(s)	108, 519
AcuI	CTGAAG	2 cut(s)	16, 120
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	2 cut(s)	552, 637
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	131
AjuI	GAANNNNNNNTTGG	2 cut(s)	556, 588
AluBI	AGCT	6 cut(s)	36, 236, 263, 429, 690, 701
AluI	AGCT	6 cut(s)	36, 236, 263, 429, 690, 701
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	2 cut(s)	158, 290
Aor13HI	TCCGGA	1 cut(s)	104
AoxI	GGCC	1 cut(s)	568
ApeKI	GCWGC	8 cut(s)	197, 200, 203, 272, 472, 500, 530, 712
ApoI	RAATTY	2 cut(s)	108, 519
AspS9I	GGNCC	1 cut(s)	568
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	8 cut(s)	184, 187, 215, 259, 484, 512, 517, 699
BceAI	ACGGC	1 cut(s)	422
BcoDI	GTCTC	2 cut(s)	158, 290
BfaI	CTAG	6 cut(s)	230, 401, 422, 456, 557, 672
BfmI	CTRYAG	3 cut(s)	51, 201, 303
BglI	GCCNNNNNGGC	1 cut(s)	539
BisI	GCNGC	8 cut(s)	198, 201, 204, 273, 473, 501, 531, 713
BlsI	GCNGC	8 cut(s)	199, 202, 205, 274, 474, 502, 532, 714
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	2 cut(s)	396, 569
BmsI	GCATC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	2 cut(s)	92, 581
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bse1I	ACTGG	1 cut(s)	543
Bse3DI	GCAATG	2 cut(s)	282, 364
Bse8I	GATNNNNATC	2 cut(s)	92, 581
BseAI	TCCGGA	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	390
BseJI	GATNNNNATC	2 cut(s)	92, 581
BseMI	GCAATG	2 cut(s)	282, 364
BseNI	ACTGG	1 cut(s)	543
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	8 cut(s)	184, 187, 215, 259, 484, 512, 517, 699
BsgI	GTGCAG	1 cut(s)	698
BshFI	GGCC	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	105, 122
BsmAI	GTCTC	2 cut(s)	158, 290
BsnI	GGCC	1 cut(s)	570
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp13I	TCCGGA	1 cut(s)	104
Bsp1407I	TGTACA	1 cut(s)	635
Bsp19I	CCATGG	1 cut(s)	390
BspANI	GGCC	1 cut(s)	570
BspEI	TCCGGA	1 cut(s)	104
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	396, 569
BspMAI	CTGCAG	2 cut(s)	55, 205
BsrDI	GCAATG	2 cut(s)	282, 364
BsrGI	TGTACA	1 cut(s)	635
BsrI	ACTGG	1 cut(s)	543
BssECI	CCNNGG	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	390
BstAUI	TGTACA	1 cut(s)	635
BstC8I	GCNNGC	4 cut(s)	328, 431, 435, 618
BstDSI	CCRYGG	1 cut(s)	390
BstEII	GGTNACC	1 cut(s)	239
BstMAI	GTCTC	2 cut(s)	158, 290
BstMWI	GCNNNNNNNGC	6 cut(s)	97, 203, 260, 269, 539, 662
BstNSI	RCATGY	1 cut(s)	270
BstPI	GGTNACC	1 cut(s)	239
BstSFI	CTRYAG	3 cut(s)	51, 201, 303
BstV1I	GCAGC	8 cut(s)	184, 187, 215, 259, 484, 512, 517, 699
BsuRI	GGCC	1 cut(s)	570
BtgI	CCRYGG	1 cut(s)	390
Cac8I	GCNNGC	4 cut(s)	328, 431, 435, 618
CciI	TCATGA	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	551, 636
CviAII	CATG	3 cut(s)	58, 267, 391
CviQI	GTAC	2 cut(s)	551, 636
DraIII	CACNNNGTG	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	390
Eco57I	CTGAAG	2 cut(s)	16, 120
Eco91I	GGTNACC	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	568
EcoO65I	GGTNACC	1 cut(s)	239
EcoRI	GAATTC	2 cut(s)	108, 519
EcoT14I	CCWWGG	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	390
FaeI	CATG	3 cut(s)	61, 270, 394
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	3 cut(s)	57, 266, 390
FauNDI	CATATG	1 cut(s)	187
Fnu4HI	GCNGC	8 cut(s)	198, 201, 204, 273, 473, 501, 531, 713
Fsp4HI	GCNGC	8 cut(s)	198, 201, 204, 273, 473, 501, 531, 713
FspBI	CTAG	6 cut(s)	230, 401, 422, 456, 557, 672
GluI	GCNGC	8 cut(s)	198, 201, 204, 273, 473, 501, 531, 713
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	2 cut(s)	105, 122
Hin1II	CATG	3 cut(s)	61, 270, 394
HinfI	GANTC	2 cut(s)	18, 582
HpaII	CCGG	2 cut(s)	105, 122
Hpy188III	TCNNGA	6 cut(s)	58, 105, 128, 157, 628, 695
HpyAV	CCTTC	3 cut(s)	57, 558, 655
HpyCH4V	TGCA	8 cut(s)	53, 203, 275, 287, 433, 500, 604, 715
HpyF10VI	GCNNNNNNNGC	6 cut(s)	97, 203, 260, 269, 539, 662
Hsp92II	CATG	3 cut(s)	61, 270, 394
Kpn2I	TCCGGA	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	233, 400
LpnPI	CCDG	8 cut(s)	118, 135, 170, 222, 432, 524, 532, 638
Lsp1109I	GCAGC	8 cut(s)	184, 187, 215, 259, 484, 512, 517, 699
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	6 cut(s)	230, 401, 422, 456, 557, 672
MaeIII	GTNAC	5 cut(s)	166, 239, 307, 382, 625
MboII	GAAGA	1 cut(s)	22
MfeI	CAATTG	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	5 cut(s)	108, 519, 525, 609, 640
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	5 cut(s)	408, 452, 554, 660, 676
MroI	TCCGGA	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	389
MspI	CCGG	2 cut(s)	105, 122
MunI	CAATTG	1 cut(s)	525
MwoI	GCNNNNNNNGC	6 cut(s)	97, 203, 260, 269, 539, 662
NcoI	CCATGG	1 cut(s)	390
NdeI	CATATG	1 cut(s)	187
NlaIII	CATG	3 cut(s)	61, 270, 394
NlaIV	GGNNCC	2 cut(s)	396, 569
NmuCI	GTSAC	3 cut(s)	166, 382, 625
NspI	RCATGY	1 cut(s)	270
PagI	TCATGA	1 cut(s)	57
PciI	ACATGT	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	18, 582
PkrI	GCNGC	8 cut(s)	199, 202, 205, 274, 474, 502, 532, 714
PscI	ACATGT	1 cut(s)	266
PspEI	GGTNACC	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	396, 569
PspPI	GGNCC	1 cut(s)	568
PstI	CTGCAG	2 cut(s)	55, 205
RsaI	GTAC	2 cut(s)	552, 637
RsaNI	GTAC	2 cut(s)	551, 636
RseI	CAYNNNNRTG	1 cut(s)	389
SatI	GCNGC	8 cut(s)	198, 201, 204, 273, 473, 501, 531, 713
Sau96I	GGNCC	1 cut(s)	568
SduI	GDGCHC	1 cut(s)	256
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	3 cut(s)	51, 201, 303
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	5 cut(s)	108, 519, 525, 609, 640
SspMI	CTAG	6 cut(s)	230, 401, 422, 456, 557, 672
StyI	CCWWGG	1 cut(s)	390
TaqI	TCGA	1 cut(s)	696
TasI	AATT	5 cut(s)	108, 519, 525, 609, 640
TatI	WGTACW	1 cut(s)	635
TfiI	GAWTC	2 cut(s)	18, 582
TseFI	GTSAC	3 cut(s)	166, 382, 625
TseI	GCWGC	8 cut(s)	197, 200, 203, 272, 472, 500, 530, 712
Tsp45I	GTSAC	3 cut(s)	166, 382, 625
XapI	RAATTY	2 cut(s)	108, 519
XceI	RCATGY	1 cut(s)	270
XspI	CTAG	6 cut(s)	230, 401, 422, 456, 557, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.