Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0024358

Physical Location & Seq

Genomic Coordinates Forward (+)

1827380 .. 1830848

Gene Structure 3469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g02890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAAGAGAGCTTGCTATTACCAAAACGCAGAGAAGAAGAGCAGCAACAGAGAATAAATAGTACTACAAGCATTCTGACATGGACTTCTTTCTTCGAAGAAGTGAAGAGGTTGGGATGCATAGCGGGACCCATGGTTGCCGTGATTCTATCTCAGAATATGTTGCTGATCATTTCGATGATGATGGTCGGCCACCTGGGCGAGCTCGCTCTCTCAAGCTCCGCCGTCGCCATCTCCCTCTCCAACGTCACTGGCTTCAGTCTTTTCACGATTTCGACACTCTATGCAATGCCTTATGGGTTTGCTGCTGCAGCAAGTACTAGAGTTTCAAATGAACTAGGAGCTGGTAACCCACAAGGTGCTCGAATAGCTACTTTTTCTGTGATGTTTCTTGCAGTCGCAGAGATAAGTATAACAACCACGACCCTCTTTGCCTGCCGGAATGTATTTGGTTACACTTTTAGCAATGAGAAAGAAGTCATCGATTACGTCACAACCATGGCTCCTCTAGTTTGCCTGGCTGCTGCCCTAGACAGTTTGCAAGGGGTCCTTTCAGGTATTGCTAGAGGAACTGGGTGGCAGCATATAGGGGCTTACATAAACCTTGGAGCGTGTTATCTTTGTGGGATTCCAGTTGCAGCCACATTGGCTTTCTGGGTACAGCTGAGAGGAAGGGGCCTTTGGATTGGAATACAAGTTGGTGCTTTTGTGCAAATCGTTATGCTCTCTTTTGTAACAATTGGTACAAATTGGGAAAAGCAGGCAGCTAAGGCAAGGGAGAGGATATTTGAGGGAAGCTCCCCACAAGTTAATGACTTGTGTTTCAAGGCAGAGAGTAATGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

283

Amino Acids

30.51

Weight (kDa)

5.78

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	44 - 214	4.9e-22	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024358)

Species	Orthologous Gene IDs
malus_domestica	MD16G1034400.v1.1
pyrus_communis	pycom16g02890
rosa_samantha	Rh4BG335100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	125, 222
AcoI	YGGCCR	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	241
AdeI	CACNNNGTG	1 cut(s)	359
AfaI	GTAC	4 cut(s)	64, 319, 660, 745
AgsI	TTSAA	2 cut(s)	330, 826
AjnI	CCWGG	2 cut(s)	195, 516
AjuI	GAANNNNNNNTTGG	2 cut(s)	664, 696
AluBI	AGCT	8 cut(s)	12, 205, 219, 344, 371, 664, 767, 798
AluI	AGCT	8 cut(s)	12, 205, 219, 344, 371, 664, 767, 798
Alw21I	GWGCWC	2 cut(s)	207, 364
AoxI	GGCC	2 cut(s)	190, 676
ApeKI	GCWGC	9 cut(s)	43, 305, 308, 311, 521, 524, 580, 638, 764
AspS9I	GGNCC	3 cut(s)	128, 547, 676
AsuII	TTCGAA	1 cut(s)	96
AvaII	GGWCC	2 cut(s)	128, 547
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	207, 364
BbvI	GCAGC	9 cut(s)	55, 292, 295, 323, 508, 511, 592, 650, 776
BccI	CCATC	2 cut(s)	178, 239
BceAI	ACGGC	2 cut(s)	125, 209
BciT130I	CCWGG	2 cut(s)	197, 518
BclI	TGATCA	1 cut(s)	168
BfaI	CTAG	5 cut(s)	321, 338, 509, 530, 564
BfmI	CTRYAG	1 cut(s)	309
BglI	GCCNNNNNGGC	2 cut(s)	198, 647
BisI	GCNGC	9 cut(s)	44, 306, 309, 312, 522, 525, 581, 639, 765
BlsI	GCNGC	9 cut(s)	45, 307, 310, 313, 523, 526, 582, 640, 766
BmcAI	AGTACT	2 cut(s)	64, 319
Bme1390I	CCNGG	2 cut(s)	197, 518
Bme18I	GGWCC	2 cut(s)	128, 547
BmgT120I	GGNCC	3 cut(s)	128, 547, 676
BmiI	GGNNCC	5 cut(s)	129, 130, 504, 548, 677
BmrFI	CCNGG	2 cut(s)	197, 518
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	1 cut(s)	107
BmuI	ACTGGG	1 cut(s)	582
BplI	GAGNNNNNCTC	2 cut(s)	782, 814
Bpu10I	CCTNAGC	1 cut(s)	768
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	199
Bsa29I	ATCGAT	1 cut(s)	483
BsaJI	CCNNGG	4 cut(s)	132, 196, 498, 604
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bse1I	ACTGG	3 cut(s)	256, 577, 632
Bse3DI	GCAATG	2 cut(s)	294, 472
BseBI	CCWGG	2 cut(s)	197, 518
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	4 cut(s)	132, 196, 498, 604
BseGI	GGATG	1 cut(s)	122
BseMI	GCAATG	2 cut(s)	294, 472
BseMII	CTCAG	2 cut(s)	167, 656
BseNI	ACTGG	3 cut(s)	256, 577, 632
BseRI	GAGGAG	1 cut(s)	495
BseXI	GCAGC	9 cut(s)	55, 292, 295, 323, 508, 511, 592, 650, 776
BshFI	GGCC	2 cut(s)	192, 678
BshVI	ATCGAT	1 cut(s)	483
BsiHKAI	GWGCWC	2 cut(s)	207, 364
BsiSI	CCGG	1 cut(s)	439
BslFI	GGGAC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	192, 678
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	207, 364
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	2 cut(s)	132, 498
BspACI	CCGC	2 cut(s)	125, 222
BspANI	GGCC	2 cut(s)	192, 678
BspCNI	CTCAG	2 cut(s)	166, 657
BspDI	ATCGAT	1 cut(s)	483
BspLI	GGNNCC	5 cut(s)	129, 130, 504, 548, 677
BspMAI	CTGCAG	1 cut(s)	313
BspQI	GCTCTTC	1 cut(s)	33
BspT104I	TTCGAA	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	294, 472
BsrI	ACTGG	3 cut(s)	256, 577, 632
BssECI	CCNNGG	4 cut(s)	132, 196, 498, 604
BssMI	GATC	1 cut(s)	168
BssT1I	CCWWGG	3 cut(s)	132, 498, 604
Bst2UI	CCWGG	2 cut(s)	197, 518
Bst4CI	ACNGT	1 cut(s)	536
Bst6I	CTCTTC	2 cut(s)	33, 101
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	5 cut(s)	14, 203, 207, 436, 762
BstDEI	CTNAG	3 cut(s)	153, 665, 768
BstDSI	CCRYGG	2 cut(s)	132, 498
BstEII	GGTNACC	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	122
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	5 cut(s)	198, 311, 368, 647, 770
BstNI	CCWGG	2 cut(s)	197, 518
BstPI	GGTNACC	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	195, 516
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	9 cut(s)	55, 292, 295, 323, 508, 511, 592, 650, 776
Bsu15I	ATCGAT	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	192, 678
BsuTUI	ATCGAT	1 cut(s)	483
BtgI	CCRYGG	2 cut(s)	132, 498
BtsCI	GGATG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	5 cut(s)	14, 203, 207, 436, 762
Cfr13I	GGNCC	3 cut(s)	128, 547, 676
ClaI	ATCGAT	1 cut(s)	483
Csp6I	GTAC	4 cut(s)	63, 318, 659, 744
CviAII	CATG	3 cut(s)	81, 133, 499
CviQI	GTAC	4 cut(s)	63, 318, 659, 744
DdeI	CTNAG	3 cut(s)	153, 665, 768
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
DraIII	CACNNNGTG	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	33, 101
EarI	CTCTTC	2 cut(s)	33, 101
EciI	GGCGGA	1 cut(s)	211
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	3 cut(s)	132, 498, 604
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	128, 547
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	241
Eco91I	GGTNACC	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	205
EcoO109I	RGGNCCY	3 cut(s)	128, 547, 676
EcoO65I	GGTNACC	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	195, 516
EcoT14I	CCWWGG	3 cut(s)	132, 498, 604
EcoT22I	ATGCAT	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	3 cut(s)	132, 498, 604
FaeI	CATG	3 cut(s)	84, 136, 502
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	3 cut(s)	80, 132, 498
FauI	CCCGC	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	9 cut(s)	44, 306, 309, 312, 522, 525, 581, 639, 765
FokI	GGATG	1 cut(s)	129
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	9 cut(s)	44, 306, 309, 312, 522, 525, 581, 639, 765
FspBI	CTAG	5 cut(s)	321, 338, 509, 530, 564
GluI	GCNGC	9 cut(s)	44, 306, 309, 312, 522, 525, 581, 639, 765
HaeIII	GGCC	2 cut(s)	192, 678
HapII	CCGG	1 cut(s)	439
Hin1II	CATG	3 cut(s)	84, 136, 502
HinfI	GANTC	2 cut(s)	145, 628
HpaII	CCGG	1 cut(s)	439
Hpy188I	TCNGA	2 cut(s)	78, 156
Hpy188III	TCNNGA	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	666
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4IV	ACGT	2 cut(s)	246, 489
HpyCH4V	TGCA	7 cut(s)	120, 287, 311, 395, 541, 638, 712
HpyF10VI	GCNNNNNNNGC	5 cut(s)	198, 311, 368, 647, 770
HpyF3I	CTNAG	3 cut(s)	153, 665, 768
HpySE526I	ACGT	2 cut(s)	246, 489
Hsp92II	CATG	3 cut(s)	84, 136, 502
KflI	GGGWCCC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	168
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	5 cut(s)	224, 341, 508, 608, 803
Lsp1109I	GCAGC	9 cut(s)	55, 292, 295, 323, 508, 511, 592, 650, 776
LweI	GCATC	1 cut(s)	107
MaeI	CTAG	5 cut(s)	321, 338, 509, 530, 564
MaeII	ACGT	2 cut(s)	246, 489
MaeIII	GTNAC	5 cut(s)	247, 347, 452, 490, 733
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	6 cut(s)	17, 47, 50, 85, 110, 118
MfeI	CAATTG	1 cut(s)	738
MhlI	GDGCHC	2 cut(s)	207, 364
MluCI	AATT	2 cut(s)	738, 748
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	8 cut(s)	102, 248, 437, 516, 560, 662, 774, 784
Mph1103I	ATGCAT	1 cut(s)	122
MseI	TTAA	1 cut(s)	810
MslI	CAYNNNNRTG	2 cut(s)	176, 497
MspA1I	CMGCKG	1 cut(s)	664
MspI	CCGG	1 cut(s)	439
MspR9I	CCNGG	2 cut(s)	197, 518
MunI	CAATTG	1 cut(s)	738
Mva1269I	GAATGC	1 cut(s)	72
MvaI	CCWGG	2 cut(s)	197, 518
MwoI	GCNNNNNNNGC	5 cut(s)	198, 311, 368, 647, 770
NcoI	CCATGG	2 cut(s)	132, 498
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	3 cut(s)	84, 136, 502
NlaIV	GGNNCC	5 cut(s)	129, 130, 504, 548, 677
NmuCI	GTSAC	2 cut(s)	247, 490
NsiI	ATGCAT	1 cut(s)	122
NspV	TTCGAA	1 cut(s)	96
PciSI	GCTCTTC	1 cut(s)	33
PctI	GAATGC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	145, 628
PkrI	GCNGC	9 cut(s)	45, 307, 310, 313, 523, 526, 582, 640, 766
PpuMI	RGGWCCY	2 cut(s)	128, 547
Psp124BI	GAGCTC	1 cut(s)	207
Psp5II	RGGWCCY	2 cut(s)	128, 547
Psp6I	CCWGG	2 cut(s)	195, 516
PspEI	GGTNACC	1 cut(s)	347
PspGI	CCWGG	2 cut(s)	195, 516
PspN4I	GGNNCC	5 cut(s)	129, 130, 504, 548, 677
PspPI	GGNCC	3 cut(s)	128, 547, 676
PspPPI	RGGWCCY	2 cut(s)	128, 547
PstI	CTGCAG	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	664
RsaI	GTAC	4 cut(s)	64, 319, 660, 745
RsaNI	GTAC	4 cut(s)	63, 318, 659, 744
RseI	CAYNNNNRTG	2 cut(s)	176, 497
SacI	GAGCTC	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	810
SatI	GCNGC	9 cut(s)	44, 306, 309, 312, 522, 525, 581, 639, 765
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	3 cut(s)	128, 547, 676
ScaI	AGTACT	2 cut(s)	64, 319
ScrFI	CCNGG	2 cut(s)	197, 518
SduI	GDGCHC	2 cut(s)	207, 364
SfaNI	GCATC	1 cut(s)	107
SfcI	CTRYAG	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	96
SinI	GGWCC	2 cut(s)	128, 547
SmiMI	CAYNNNNRTG	2 cut(s)	176, 497
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	2 cut(s)	738, 748
SsiI	CCGC	2 cut(s)	125, 222
SspMI	CTAG	5 cut(s)	321, 338, 509, 530, 564
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	195, 516
StyI	CCWWGG	3 cut(s)	132, 498, 604
TaaI	ACNGT	1 cut(s)	536
TaiI	ACGT	2 cut(s)	249, 492
TaqI	TCGA	5 cut(s)	96, 176, 275, 364, 483
TasI	AATT	2 cut(s)	738, 748
TatI	WGTACW	2 cut(s)	62, 317
TfiI	GAWTC	2 cut(s)	145, 628
Tru1I	TTAA	1 cut(s)	810
Tru9I	TTAA	1 cut(s)	810
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	2 cut(s)	247, 490
TseI	GCWGC	9 cut(s)	43, 305, 308, 311, 521, 524, 580, 638, 764
Tsp45I	GTSAC	2 cut(s)	247, 490
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	128, 547
XspI	CTAG	5 cut(s)	321, 338, 509, 530, 564
ZrmI	AGTACT	2 cut(s)	64, 319
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.