MD16G1125900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
9136375 .. 9138181
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1125900.v1.1.491

Sequence Viewer

Length: 237 bp
ATGGCGGGTGCGTTTTGGGGGACGCGAGTGCTGGAGATAGTGAAGAAGCACGACTCCGGCGGTCTTGTTTGGAAGAGAATAAAGCTGACCACCACCCGTAAAGCCAACGCCAAGAAGCGCCTCCTCCGCGTTTGGCAGAATGAAGCTGTCCTGAGGGCATGTGCAGAAACACCTTCACAGTCATCTGGTGCTGCTACTGTTGGAGTGTCTGAGAAAGAAAACACAGGTAGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

8.51

Weight (kDa)

10.44

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013095)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 25, 129
AciI CCGC 3 cut(s) 5, 60, 127
AluBI AGCT 2 cut(s) 85, 146
AluI AGCT 2 cut(s) 85, 146
ApeKI GCWGC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 120
AxyI CCTNAGG 1 cut(s) 152
BbvI GCAGC 1 cut(s) 178
BfoI RGCGCY 1 cut(s) 121
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
BpmI CTGGAG 1 cut(s) 53
Bse21I CCTNAGG 1 cut(s) 152
BseMII CTCAG 2 cut(s) 143, 201
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 1 cut(s) 183
Bsh1236I CGCG 2 cut(s) 25, 129
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 34
BspACI CCGC 3 cut(s) 5, 60, 127
BspCNI CTCAG 2 cut(s) 144, 202
BspFNI CGCG 2 cut(s) 25, 129
Bst4CI ACNGT 2 cut(s) 180, 199
Bst6I CTCTTC 1 cut(s) 68
BstDEI CTNAG 2 cut(s) 152, 210
BstFNI CGCG 2 cut(s) 25, 129
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 162
BstUI CGCG 2 cut(s) 25, 129
BstV1I GCAGC 1 cut(s) 178
Bsu36I CCTNAGG 1 cut(s) 152
CfoI GCGC 1 cut(s) 120
CseI GACGC 1 cut(s) 31
CviAII CATG 1 cut(s) 159
CviJI RGCY 4 cut(s) 85, 104, 146, 231
CviKI_1 RGCY 4 cut(s) 85, 104, 146, 231
DdeI CTNAG 2 cut(s) 152, 210
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco81I CCTNAGG 1 cut(s) 152
FaeI CATG 1 cut(s) 162
FaiI YATR 1 cut(s) 160
FaqI GGGAC 1 cut(s) 34
FatI CATG 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 192
GlaI GCGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 121
HapII CCGG 1 cut(s) 57
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 162
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 1 cut(s) 53
HpaII CCGG 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 2 cut(s) 180, 199
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 2 cut(s) 152, 210
Hsp92II CATG 1 cut(s) 162
HspAI GCGC 1 cut(s) 118
LpnPI CCDG 5 cut(s) 17, 70, 164, 171, 210
Lsp1109I GCAGC 1 cut(s) 178
MboII GAAGA 2 cut(s) 55, 85
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 3 cut(s) 131, 134, 147
MspI CCGG 1 cut(s) 57
MvnI CGCG 2 cut(s) 25, 129
MwoI GCNNNNNNNGC 1 cut(s) 126
NlaIII CATG 1 cut(s) 162
NspI RCATGY 1 cut(s) 162
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
SatI GCNGC 1 cut(s) 192
SchI GAGTC 1 cut(s) 47
SetI ASST 4 cut(s) 87, 148, 175, 229
SsiI CCGC 3 cut(s) 5, 60, 127
TaaI ACNGT 2 cut(s) 180, 199
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 156
XceI RCATGY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.