Rorug04G0236100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0013095
Physical Location & Seq
Forward (+)
40252187 .. 40254807
2621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0236100.1

Sequence Viewer

Length: 735 bp
ATGTCAGGCCCTGCGTGCTGCTCAAACCCTCCAGCCCTTAACCCAGCAAGTGGTTCCGGCCATGTTGAAAAGCTTGCTGGTCTGGACTCCTATGTCACTGGCTCTCCTGACTCCAAGCTTGCCGTTCTTCTCATTGCTGACATTTTTGGCTATGAAGCTCCACTCTTGAGGAAGCTCGCAGACAAAGTTGCAGCTGCTGGGTTCTTTGTTGTGGTACCTGACTTCTTTTATGGAGATGCTTTTCCTGGTGATGCTGGACCAGTTGGAAACTCTTCTGCTCTACCTATTTGGTTAAAGACACATTTACCGATCAAGGCATCTGAAGCTGCAAAACCATTACTTGAAGCTTTAAAGAGTAAAGGTGTTTCTGCAATTGGGGCTGTAGGCTTCTGTTGGGGAGCCAAGGCTGCGGTTGAACTTGCAAAGTATGATGATCTTCTCCGTGCTGCTGTCTTGTGCCATCCTTCATTCGTCACTGTGGACGATTTCAAGGCGGTTAAGGTTCCCATTTCTGTACTTGGAGCTGAGATTGATCCGATTTCGCCACCTGACGTCGTGAAACAATTTGAAGAGGTTTTAACTGCAAGACCTGAGATCAAAAGCCATGTGAAGATATTCCCAAAAGTGCAACATGGGTGGACCGTGAGGTACAACGCTGAAGATGAGGCCGCTGTTAAGTGTGCTGAGGAGGCTCATCAAGACATACTGGATTGGTTCTTTAGCCATGTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
L31

Protein Analysis

244

Amino Acids

25.95

Weight (kDa)

5.63

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 29 - 240 1.6e-31 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27435
fragaria_vesca FvH4_4g23120 FvH4_4g23120
malus_domestica MD13G1125100.v1.1 MD16G1125900.v1.1
prunus_persica Prupe.1G220300_v2.0.a1 Prupe.1G220300_v2.0.a1
pyrus_communis pycom13g10910
rosa_chinensis RchiOBHm_Chr4g0429451
rosa_multiflora Rmu_sc0003708.1_g000018 Rmu_sc0004825.1_g000006
rosa_roxburghii Rroxscaffold_5G00371150
rosa_rugosa Rorug04G0236100
rosa_samantha Rh4AG291700 Rh4BG297500 Rh4CG313000 Rh4DG294600
rosa_wichuraiana Rw4G025260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AatII GACGTC 1 cut(s) 555
Acc65I GGTACC 1 cut(s) 214
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 50
AciI CCGC 3 cut(s) 410, 494, 669
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 2 cut(s) 342, 678
AcyI GRCGYC 1 cut(s) 552
AfaI GTAC 3 cut(s) 216, 516, 650
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 5 cut(s) 68, 344, 416, 490, 569
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 8 cut(s) 73, 118, 158, 175, 194, 326, 347, 524
AluI AGCT 8 cut(s) 73, 118, 158, 175, 194, 326, 347, 524
AlwI GGATC 1 cut(s) 527
AlwNI CAGNNNCTG 2 cut(s) 11, 197
AoxI GGCC 3 cut(s) 7, 58, 666
ApeKI GCWGC 6 cut(s) 18, 191, 194, 326, 407, 446
Asp700I GAANNNNTTC 2 cut(s) 271, 614
Asp718I GGTACC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 8, 257, 639
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 2 cut(s) 257, 639
BanI GGYRCC 1 cut(s) 214
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 6 cut(s) 5, 181, 203, 313, 394, 433
BccI CCATC 1 cut(s) 468
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 381
BisI GCNGC 7 cut(s) 19, 192, 195, 327, 408, 447, 669
BlsI GCNGC 7 cut(s) 20, 193, 196, 328, 409, 448, 670
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 2 cut(s) 257, 639
BmgT120I GGNCC 3 cut(s) 8, 257, 639
BmiI GGNNCC 4 cut(s) 55, 216, 400, 504
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 3 cut(s) 226, 241, 326
BpmI CTGGAG 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 552
BsaJI CCNNGG 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 3 cut(s) 103, 260, 711
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 3 cut(s) 516, 582, 675
BseNI ACTGG 3 cut(s) 103, 260, 711
BseRI GAGGAG 1 cut(s) 701
BseXI GCAGC 6 cut(s) 5, 181, 203, 313, 394, 433
BseYI CCCAGC 2 cut(s) 43, 197
BshFI GGCC 3 cut(s) 9, 60, 668
BshNI GGYRCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 50
BsnI GGCC 3 cut(s) 9, 60, 668
Bsp143I GATC 4 cut(s) 309, 433, 532, 594
BspACI CCGC 3 cut(s) 410, 494, 669
BspANI GGCC 3 cut(s) 9, 60, 668
BspCNI CTCAG 3 cut(s) 517, 583, 676
BspLI GGNNCC 4 cut(s) 55, 216, 400, 504
BspPI GGATC 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 3 cut(s) 103, 260, 711
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 4 cut(s) 309, 433, 532, 594
BssNI GRCGYC 1 cut(s) 552
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 478, 643
Bst6I CTCTTC 2 cut(s) 277, 564
BstACI GRCGYC 1 cut(s) 552
BstC8I GCNNGC 4 cut(s) 16, 75, 120, 177
BstDEI CTNAG 3 cut(s) 525, 591, 684
BstF5I GGATG 1 cut(s) 460
BstKTI GATC 4 cut(s) 312, 436, 535, 597
BstMBI GATC 4 cut(s) 309, 433, 532, 594
BstMWI GCNNNNNNNGC 5 cut(s) 15, 323, 377, 407, 689
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 6 cut(s) 5, 181, 203, 313, 394, 433
BsuRI GGCC 3 cut(s) 9, 60, 668
BtsCI GGATG 1 cut(s) 460
BtsIMutI CAGTG 2 cut(s) 96, 474
Cac8I GCNNGC 4 cut(s) 16, 75, 120, 177
CaiI CAGNNNCTG 2 cut(s) 11, 197
Cfr13I GGNCC 3 cut(s) 8, 257, 639
Csp6I GTAC 3 cut(s) 215, 515, 649
CspCI CAANNNNNGTGG 2 cut(s) 617, 652
CviAII CATG 4 cut(s) 62, 605, 632, 725
CviQI GTAC 3 cut(s) 215, 515, 649
DdeI CTNAG 3 cut(s) 525, 591, 684
DpnI GATC 4 cut(s) 311, 435, 534, 596
DpnII GATC 4 cut(s) 309, 433, 532, 594
DraI TTTAAA 1 cut(s) 351
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 277, 564
EarI CTCTTC 2 cut(s) 277, 564
Eco130I CCWWGG 1 cut(s) 402
Eco47I GGWCC 2 cut(s) 257, 639
Eco57I CTGAAG 2 cut(s) 342, 678
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 4 cut(s) 65, 608, 635, 728
FaiI YATR 9 cut(s) 63, 93, 153, 231, 429, 606, 633, 704, 726
FatI CATG 4 cut(s) 61, 604, 631, 724
Fnu4HI GCNGC 7 cut(s) 19, 192, 195, 327, 408, 447, 669
FokI GGATG 1 cut(s) 447
Fsp4HI GCNGC 7 cut(s) 19, 192, 195, 327, 408, 447, 669
GluI GCNGC 7 cut(s) 19, 192, 195, 327, 408, 447, 669
GsaI CCCAGC 2 cut(s) 47, 201
GsuI CTGGAG 1 cut(s) 15
HaeIII GGCC 3 cut(s) 9, 60, 668
HapII CCGG 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 552
Hin1II CATG 4 cut(s) 65, 608, 635, 728
HindIII AAGCTT 3 cut(s) 71, 116, 345
HinfI GANTC 2 cut(s) 86, 110
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 2 cut(s) 481, 639
Hpy188I TCNGA 2 cut(s) 322, 537
Hpy188III TCNNGA 5 cut(s) 83, 107, 166, 556, 698
Hpy8I GTNNAC 2 cut(s) 481, 639
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 1 cut(s) 474
HpyCH4III ACNGT 2 cut(s) 478, 643
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 6 cut(s) 191, 329, 371, 422, 584, 628
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 323, 377, 407, 689
HpyF3I CTNAG 3 cut(s) 525, 591, 684
HpySE526I ACGT 1 cut(s) 552
Hsp92I GRCGYC 1 cut(s) 552
Hsp92II CATG 4 cut(s) 65, 608, 635, 728
KpnI GGTACC 1 cut(s) 218
Kzo9I GATC 4 cut(s) 309, 433, 532, 594
LmnI GCTCC 3 cut(s) 163, 398, 521
Lsp1109I GCAGC 6 cut(s) 5, 181, 203, 313, 394, 433
LweI GCATC 3 cut(s) 226, 241, 326
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 2 cut(s) 94, 472
MalI GATC 4 cut(s) 311, 435, 534, 596
MboI GATC 4 cut(s) 309, 433, 532, 594
MboII GAAGA 6 cut(s) 119, 264, 428, 581, 622, 671
MfeI CAATTG 1 cut(s) 372
MluCI AATT 2 cut(s) 372, 563
MlyI GAGTC 2 cut(s) 80, 104
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 7 cut(s) 39, 162, 565, 639, 658, 679, 682
MroXI GAANNNNTTC 2 cut(s) 271, 614
MseI TTAA 6 cut(s) 39, 293, 350, 498, 578, 675
MspA1I CMGCKG 2 cut(s) 194, 671
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 246
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 5 cut(s) 15, 323, 377, 407, 689
NdeII GATC 4 cut(s) 309, 433, 532, 594
NlaIII CATG 4 cut(s) 65, 608, 635, 728
NlaIV GGNNCC 4 cut(s) 55, 216, 400, 504
NmuCI GTSAC 2 cut(s) 94, 472
PdmI GAANNNNTTC 2 cut(s) 271, 614
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 7 cut(s) 20, 193, 196, 328, 409, 448, 670
PleI GAGTC 2 cut(s) 80, 104
PpsI GAGTC 2 cut(s) 80, 104
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 2 cut(s) 43, 197
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 4 cut(s) 55, 216, 400, 504
PspPI GGNCC 3 cut(s) 8, 257, 639
PstNI CAGNNNCTG 2 cut(s) 11, 197
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 3 cut(s) 216, 516, 650
RsaNI GTAC 3 cut(s) 215, 515, 649
SaqAI TTAA 6 cut(s) 39, 293, 350, 498, 578, 675
SatI GCNGC 7 cut(s) 19, 192, 195, 327, 408, 447, 669
Sau3AI GATC 4 cut(s) 309, 433, 532, 594
Sau96I GGNCC 3 cut(s) 8, 257, 639
SchI GAGTC 2 cut(s) 80, 104
ScrFI CCNGG 1 cut(s) 246
SfaNI GCATC 3 cut(s) 226, 241, 326
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 2 cut(s) 257, 639
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 2 cut(s) 372, 563
SsiI CCGC 3 cut(s) 410, 494, 669
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 478, 643
TaiI ACGT 1 cut(s) 555
TasI AATT 2 cut(s) 372, 563
TatI WGTACW 1 cut(s) 514
TauI GCSGC 1 cut(s) 671
Tru1I TTAA 6 cut(s) 39, 293, 350, 498, 578, 675
Tru9I TTAA 6 cut(s) 39, 293, 350, 498, 578, 675
TscAI CASTG 2 cut(s) 103, 481
TseFI GTSAC 2 cut(s) 94, 472
TseI GCWGC 6 cut(s) 18, 191, 194, 326, 407, 446
Tsp45I GTSAC 2 cut(s) 94, 472
TspDTI ATGAA 2 cut(s) 168, 456
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 2 cut(s) 103, 481
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 257, 639
XmnI GAANNNNTTC 2 cut(s) 271, 614
ZraI GACGTC 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.