MD17G1080000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0019778
Physical Location & Seq
Reverse (-)
6613279 .. 6614993
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1080000.v1.1.491

Sequence Viewer

Length: 270 bp
ATGGCGAAGGTCAAAGAATTGCGCCAAGAATCCAAGGACGCCAGCGTTGCGAAGAGTGAGAAGAAGAGGAACCATGGCTCCACCGAGTTCTTCGTCTTCGTTGATTACCTCTTCCTCTCCATATTCTTCGCGTTCCTCTCTGCTTCATCATCTTTAAGATTACATCGGATTCTTTCTATCTCTAGTCACCCACATTCTTTCGAATCAGGTTCAGGTCCAAGCTTGAAGAACTTCACGGGTGTTTGCATCGTCGGATTCATGATGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.94

Weight (kDa)

9.39

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019778)

Species Orthologous Gene IDs
malus_domestica MD17G1080000.v1.1
pyrus_communis pycom09g01550
rosa_chinensis RchiOBHm_Chr2g0162341
rosa_roxburghii Rroxscaffold_2G00088010
rosa_rugosa Rorug02G0496600
rosa_samantha Rh2DG585700
rosa_wichuraiana Rw2G046590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 39
AgsI TTSAA 1 cut(s) 226
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Asp700I GAANNNNTTC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 179
AsuII TTCGAA 1 cut(s) 201
AvaII GGWCC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 88
BfaI CTAG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 2 cut(s) 71, 79
BmsI GCATC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 88
Bpu14I TTCGAA 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 33, 73
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
BseDI CCNNGG 2 cut(s) 33, 73
Bsh1236I CGCG 1 cut(s) 131
Bsp119I TTCGAA 1 cut(s) 201
Bsp19I CCATGG 1 cut(s) 73
BspFNI CGCG 1 cut(s) 131
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 71, 79
BspT104I TTCGAA 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 33, 73
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 2 cut(s) 33, 73
Bst6I CTCTTC 3 cut(s) 47, 59, 116
BstACI GRCGYC 1 cut(s) 39
BstBI TTCGAA 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 43
BstDSI CCRYGG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstUI CGCG 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 43
CciI TCATGA 1 cut(s) 258
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 215
CseI GACGC 1 cut(s) 47
CviAII CATG 2 cut(s) 74, 259
CviJI RGCY 2 cut(s) 78, 222
CviKI_1 RGCY 2 cut(s) 78, 222
Eam1104I CTCTTC 3 cut(s) 47, 59, 116
EarI CTCTTC 3 cut(s) 47, 59, 116
Eco130I CCWWGG 2 cut(s) 33, 73
Eco47I GGWCC 1 cut(s) 215
EcoT14I CCWWGG 2 cut(s) 33, 73
ErhI CCWWGG 2 cut(s) 33, 73
FaeI CATG 2 cut(s) 77, 262
FaiI YATR 3 cut(s) 75, 122, 260
FatI CATG 2 cut(s) 73, 258
FspBI CTAG 1 cut(s) 183
GlaI GCGC 1 cut(s) 23
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 2 cut(s) 77, 262
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 4 cut(s) 29, 169, 203, 255
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 168, 254
Hpy188III TCNNGA 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 2 cut(s) 77, 262
HspAI GCGC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 3 cut(s) 55, 192, 198
LweI GCATC 1 cut(s) 255
MaeI CTAG 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 185
MboII GAAGA 8 cut(s) 64, 73, 76, 82, 88, 103, 118, 238
MluCI AATT 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 4 cut(s) 60, 119, 125, 146
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 1 cut(s) 155
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 47
NcoI CCATGG 1 cut(s) 73
NlaIII CATG 2 cut(s) 77, 262
NlaIV GGNNCC 2 cut(s) 71, 79
NmuCI GTSAC 1 cut(s) 185
NspV TTCGAA 1 cut(s) 201
PagI TCATGA 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 4 cut(s) 29, 169, 203, 255
PspN4I GGNNCC 2 cut(s) 71, 79
PspPI GGNCC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 155
Sau96I GGNCC 1 cut(s) 215
SetI ASST 5 cut(s) 12, 111, 211, 217, 224
SfaNI GCATC 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 201
SinI GGWCC 1 cut(s) 215
Sse9I AATT 1 cut(s) 17
SspMI CTAG 1 cut(s) 183
StyI CCWWGG 2 cut(s) 33, 73
TaqI TCGA 1 cut(s) 201
TasI AATT 1 cut(s) 17
TfiI GAWTC 4 cut(s) 29, 169, 203, 255
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 135, 247
VpaK11BI GGWCC 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.